TomoSeq data search

Data search

Results for MligTC455_33976

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_33976

14

0.29

Mlig455_046330, Mlig455_047555, Mlig455_069685

Neo: -

Age: -

Mlig455_046330 {REF} {Length: 210} {Mouse: ENSMUSG00000090546, Cdr1, cerebellar degeneration related antigen 1, [Score=69.3, Expect=2e-15]} {RNA1509_43825} {RNA1310_55270} {RNA815_45398}

Mlig455_047555 {REF} {Length: 1917} {Pfam: Plasmodium histidine-rich protein (HRPII/III) [PF05403.13, score=54.7]} {Mouse: ENSMUSG00000090546, Cdr1, cerebellar degeneration related antigen 1, [RH, Score=227, Expect=7e-69]} {RNA1509_43825} {RNA1310_55270, RNA1509_43825} {RNA1509_43825, RNA815_45398}

Mlig455_069685 {REF} {Length: 1553} {Pfam: Plasmodium histidine-rich protein (HRPII/III) [PF05403.13, score=50.9]} {Mouse: ENSMUSG00000090546, Cdr1, cerebellar degeneration related antigen 1, [RH, Score=223, Expect=3e-67]} {RNA1509_43825} {RNA1310_55270} {RNA815_45398}

Cumulative graph for MligTC455_33976

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-2.532	0.726	1.00000	1.00000
RegionR2	1.511	0.726	0.53323	0.90414
RegionR3	1.281	0.726	0.49704	0.99329
RegionR4	0.838	0.726	0.90427	1.00000
RegionR5	0.831	0.726	0.61071	0.96742
RegionR6	2.588	0.726	0.44215	1.00000
RegionR7	-2.252	0.726	1.00000	1.00000
RegionR8	-2.265	0.726	1.00000	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.27	0.726	1.00000	1.00000
RegenerationR2	-3.628	0.726	0.21656	0.66376
RegenerationR3	-3.309	0.726	0.29619	0.72746
RegenerationR4	-2.822	0.726	0.52966	0.88409
RegenerationR5	-2.768	0.726	0.27713	0.70622
RegenerationR6	-4.454	0.726	0.25726	0.60723
RegenerationBL	-1.699	0.726	1.00000	1.00000
RegenerationTP	-0.204	0.726	1.00000	1.00000

Genes with expression patterns similar to MligTC455_33976

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_33976	14	0.29	Mlig455_046330, Mlig455_047555, Mlig455_069685	Neo: - Age: -		2	-	1.000	1.000	-	-	-	Mlig455_046330 {REF} {Length: 210} {Mouse: ENSMUSG00000090546, Cdr1, cerebellar degeneration related antigen 1, [Score=69.3, Expect=2e-15]} {RNA1509_43825} {RNA1310_55270} {RNA815_45398} Mlig455_047555 {REF} {Length: 1917} {Pfam: Plasmodium histidine-rich protein (HRPII/III) [PF05403.13, score=54.7]} {Mouse: ENSMUSG00000090546, Cdr1, cerebellar degeneration related antigen 1, [RH, Score=227, Expect=7e-69]} {RNA1509_43825} {RNA1310_55270, RNA1509_43825} {RNA1509_43825, RNA815_45398} Mlig455_069685 {REF} {Length: 1553} {Pfam: Plasmodium histidine-rich protein (HRPII/III) [PF05403.13, score=50.9]} {Mouse: ENSMUSG00000090546, Cdr1, cerebellar degeneration related antigen 1, [RH, Score=223, Expect=3e-67]} {RNA1509_43825} {RNA1310_55270} {RNA815_45398}
2.	MligTC455_17771	78	1.62	Mlig455_001663	Neo: - Age: -		0.985	-	-	0.985	-	-	-	Mlig455_001663 {REF} {Length: 1828} {NoTransDecoderORF} {RNA1310_81916}
3.	MligTC455_21236	54	1.12	Mlig455_022300	Neo: - Age: -	EFNB2	0.984	-	-	0.984	-	-	-	Mlig455_022300 {REF} {Length: 2080} {Pfam: Ephrin [PF00812.19, score=54.8]} {Human: ENSG00000125266, EFNB2, ephrin B2, [RH, Score=75.1, Expect=9e-15]} {Mouse: ENSMUSG00000001300, Efnb2, ephrin B2, [RH, Score=75.1, Expect=6e-15]} {Celegans: WBGene00001165, efn-4, Ephrin-4, [Score=49.7, Expect=1e-06]} {RNA1310_17193.1} {RNA815_6680}
4.	MligTC455_26471	119	2.47	Mlig455_050266	Neo: Neoblast, stringent Age: Up-Down-Down	PUM3	0.983	-	-	0.983	-	-	-	Mlig455_050266 {REF} {Length: 4249} {TRANSSPLICED} {Pfam: CPL (NUC119) domain [PF08144.13, score=55.2]; Pumilio-family RNA binding repeat [PF00806.21, score=24.5]} {Human: ENSG00000080608, PUM3, pumilio RNA binding family member 3, [RH, Score=210, Expect=4e-58]} {Mouse: ENSMUSG00000041360, Pum3, pumilio RNA-binding family member 3, [RH, Score=217, Expect=9e-61]} {Dmel: FBgn0015527, peng, penguin, [RH, Score=127, Expect=4e-30]} {Celegans: WBGene00014165, puf-12, Pumilio domain-containing protein 12, [RH, Score=204, Expect=2e-55]} {Smed: dd_Smed_v6_7389_0_1, dd_Smed_v6_7389_0_1, [RH, Score=221, Expect=7e-63]} {RNA1509_8112} {RNA1310_6869.1} {RNA815_1829.1}
5.	MligTC455_42559	17	0.36	Mlig455_064128	Neo: - Age: -		0.983	-	-	0.983	-	-	-	Mlig455_064128 {REF} {Length: 1837} {Pfam: Glycine rich protein [PF12810.9, score=23.2]} {RNA1310_112308} {RNA815_32418}
6.	MligTC455_10392	26	0.54	Mlig455_022962	Neo: - Age: -		0.978	-	-	0.978	-	-	-	Mlig455_022962 {REF} {Length: 1070} {RNA1509_11065} {RNA1310_47736} {RNA815_52348}
7.	MligTC455_51794	7	0.14	Mlig455_069725	Neo: - Age: -		0.978	-	-	0.978	-	-	-	Mlig455_069725 {REF} {Length: 787} {NoTransDecoderORF} {RNA1509_48977} {RNA1310_77518} {RNA815_45587}
8.	MligTC455_53346	17	0.35	Mlig455_010821, Mlig455_010828	Neo: - Age: Up-Down-Down	CNGA3	0.976	-	-	0.976	-	-	-	Mlig455_010821 {REF} {Length: 2277} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=67.8]; C-terminal leucine zipper domain of cyclic nucleotide-gated channels [PF16526.7, score=60.3]; Ion transport protein [PF00520.33, score=50.1]} {Human: ENSG00000144191, CNGA3, cyclic nucleotide gated channel alpha 3, [Score=614, Expect=0.0]} {Mouse: ENSMUSG00000026114, Cnga3, cyclic nucleotide gated channel alpha 3, [Score=609, Expect=0.0]} {Dmel: FBgn0261612, CngA, Cyclic nucleotide-gated ion channel subunit A, [Score=559, Expect=0.0]} {Celegans: WBGene00006526, tax-4, Cyclic nucleotide-gated cation channel, [Score=538, Expect=0.0]} {Smed: dd_Smed_v6_22398_0_1, dd_Smed_v6_22398_0_1, [Score=629, Expect=0.0]} {RNA1310_57933} {RNA815_59167} Mlig455_010828 {REF} {Length: 794} {Pfam: C-terminal leucine zipper domain of cyclic nucleotide-gated channels [PF16526.7, score=45.0]; Cyclic nucleotide-binding domain [PF00027.31, score=27.6]} {Human: ENSG00000144191, CNGA3, cyclic nucleotide gated channel alpha 3, [Score=219, Expect=1e-66]} {Mouse: ENSMUSG00000026114, Cnga3, cyclic nucleotide gated channel alpha 3, [Score=214, Expect=8e-65]} {Dmel: FBgn0261612, CngA, Cyclic nucleotide-gated ion channel subunit A, [Score=205, Expect=2e-61]} {Celegans: WBGene00006526, tax-4, Cyclic nucleotide-gated cation channel, [Score=216, Expect=4e-65]} {Smed: dd_Smed_v6_22398_0_1, dd_Smed_v6_22398_0_1, [Score=249, Expect=1e-78]} {RNA1310_57933} {RNA815_16119}
9.	MligTC455_12489	22	0.45	Mlig455_004470	Neo: - Age: -		0.969	-	-	0.969	-	-	-	Mlig455_004470 {REF} {Length: 1368} {Pfam: Lectin C-type domain [PF00059.23, score=24.8]} {RNA1310_22051} {RNA815_28288}
10.	MligTC455_11954	21	0.43	Mlig455_056770	Neo: - Age: -	LHX6	0.968	-	-	0.968	-	-	-	Mlig455_056770 {REF} {Length: 1956} {Pfam: Homeodomain [PF00046.31, score=63.1]; LIM domain [PF00412.24, score=52.0]} {Human: ENSG00000106852, LHX6, LIM homeobox 6, [Score=135, Expect=1e-35]; ENSG00000162624, LHX8, LIM homeobox 8, [Score=129, Expect=3e-33]} {Mouse: ENSMUSG00000026890, Lhx6, LIM homeobox protein 6, [Score=137, Expect=5e-36]} {Dmel: FBgn0013751, Awh, Arrowhead, [RH, Score=157, Expect=6e-45]} {Celegans: WBGene00002987, lim-4, LIM domain family; Putative transcription factor LIM-4, [RH, Score=159, Expect=1e-44]} {Smed: dd_Smed_v6_47123_0_1, dd_Smed_v6_47123_0_1, [RH, Score=222, Expect=1e-68]}
11.	MligTC455_33434	48	1	Mlig455_015085, Mlig455_047128	Neo: - Age: -	VEZF1	0.967	-	-	0.967	-	-	-	Mlig455_015085 {REF} {Length: 2879} {Mouse: ENSMUSG00000020396, Nefh, neurofilament, heavy polypeptide, [Score=54.3, Expect=3e-07]} {RNA1509_12203} {RNA1310_1239} {RNA815_9387} Mlig455_047128 {REF} {Length: 3786} {Human: ENSG00000136451, VEZF1, vascular endothelial zinc finger 1, [Score=51.6, Expect=3e-06]} {Mouse: ENSMUSG00000020396, Nefh, neurofilament, heavy polypeptide, [Score=82.4, Expect=2e-15]} {Smed: dd_Smed_v6_9974_1_8, dd_Smed_v6_9974_1_8, [Score=60.8, Expect=2e-09]} {RNA1509_12203} {RNA1310_718} {RNA815_9387}
12.	MligTC455_39974	7	0.15	Mlig455_021991	Neo: - Age: -		0.967	-	-	0.967	-	-	-	Mlig455_021991 {REF} {Length: 1566} {RNA1310_18037.2} {RNA815_41471}
13.	MligTC455_36959	14	0.28	Mlig455_019348, Mlig455_019567, Mlig455_045238	Neo: - Age: -	AC243734.1	0.965	-	-	0.965	-	-	-	Mlig455_019348 {REF} {Length: 1134} Mlig455_019567 {REF} {Length: 1135} Mlig455_045238 {REF} {Length: 1757} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=170.5]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=109.4]} {Human: ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=244, Expect=1e-73]; ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=244, Expect=1e-73]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=243, Expect=5e-73]; ENSG00000174343, CHRNA9, cholinergic receptor nicotinic alpha 9 subunit, [Score=233, Expect=3e-69]} {Mouse: ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=244, Expect=1e-73]; ENSMUSG00000029205, Chrna9, cholinergic receptor, nicotinic, alpha polypeptide 9, [Score=235, Expect=2e-70]} {Dmel: FBgn0000039, nAChRalpha2, nicotinic Acetylcholine Receptor alpha2, [Score=252, Expect=5e-76]} {Celegans: WBGene00000058, acr-19, AcetylCholine Receptor; Acetylcholine receptor (63.2 kD) (Acr-19), [Score=234, Expect=1e-69]} {Smed: dd_Smed_v6_23922_0_1, dd_Smed_v6_23922_0_1, [Score=242, Expect=2e-72]} {RNA1310_104931} {RNA815_34654}
14.	MligTC455_29168	95	1.99	Mlig455_001005	Neo: - Age: Up-Down-Down Region-enriched R2: 3.838/0.04040	DNAH5	0.957	-	-	0.957	-	-	-	Mlig455_001005 {REF} {Length: 14882} {Pfam: Dynein heavy chain, N-terminal region 1 [PF08385.14, score=578.4]; Hydrolytic ATP binding site of dynein motor region [PF12774.9, score=466.5]; Dynein heavy chain, N-terminal region 2 [PF08393.15, score=431.3]; Dynein heavy chain C-terminal domain [PF18199.3, score=314.7]; P-loop containing dynein motor region D4 [PF12780.9, score=302.4]; ATP-binding dynein motor region [PF12781.9, score=290.8]; P-loop containing dynein motor region [PF12775.9, score=229.7]; Dynein heavy chain AAA lid domain [PF18198.3, score=179.1]; Microtubule-binding stalk of dynein motor [PF12777.9, score=143.2]; Dynein heavy chain region D6 P-loop domain [PF03028.17, score=121.5]; AAA domain (dynein-related subfamily) [PF07728.16, score=75.6]; Dynein heavy chain AAA lid domain [PF17852.3, score=70.7]; AAA+ lid domain [PF17857.3, score=60.9]; AAA ATPase domain [PF13191.8, score=22.0]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=21.4]; P-loop containing region of AAA domain [PF13555.8, score=20.3]} {Human: ENSG00000039139, DNAH5, dynein axonemal heavy chain 5, [RH, Score=6260, Expect=0.0]} {Mouse: ENSMUSG00000022262, Dnah5, dynein, axonemal, heavy chain 5, [RH, Score=6234, Expect=0.0]} {Dmel: FBgn0037726, CG9492, [RH, Score=5093, Expect=0.0]} {Celegans: WBGene00000962, dhc-1, Dynein heavy chain, cytoplasmic, [Score=1290, Expect=0.0]} {Smed: dd_Smed_v6_4569_0_1, dd_Smed_v6_4569_0_1, [RH, Score=6941, Expect=0.0]} {RNA1509_51275} {RNA1310_408, RNA1509_51275} {RNA1509_51275, RNA815_44.1}
15.	MligTC455_27673	123	2.56	Mlig455_041241, Mlig455_053095	Neo: - Age: Up-Down-Up	GLRA1, GLRA3	0.956	-	-	0.956	-	-	-	Mlig455_041241 {REF} {Length: 4857} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=165.7]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=84.7]} {Human: ENSG00000145451, GLRA3, glycine receptor alpha 3, [Score=253, Expect=3e-78]; ENSG00000145888, GLRA1, glycine receptor alpha 1, [Score=249, Expect=9e-77]; ENSG00000101958, GLRA2, glycine receptor alpha 2, [Score=246, Expect=1e-75]} {Mouse: ENSMUSG00000018589, Glra2, glycine receptor, alpha 2 subunit, [Score=246, Expect=7e-76]; ENSMUSG00000038257, Glra3, glycine receptor, alpha 3 subunit, [Score=244, Expect=2e-74]; ENSMUSG00000000263, Glra1, glycine receptor, alpha 1 subunit, [Score=243, Expect=1e-74]; ENSMUSG00000018595, Glra4, glycine receptor, alpha 4 subunit, [Score=240, Expect=2e-73]} {Dmel: FBgn0024963, GluClalpha, [Score=256, Expect=1e-79]} {Celegans: WBGene00000233, avr-15, GluClalpha2B protein, [RH, Score=247, Expect=6e-76]} {Smed: dd_Smed_v6_11342_0_1, dd_Smed_v6_11342_0_1, [RH, Score=440, Expect=1e-151]} {RNA1509_35986} {RNA1310_28655} {RNA815_20247} Mlig455_053095 {REF} {Length: 4892} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=163.1]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=83.4]} {Human: ENSG00000145888, GLRA1, glycine receptor alpha 1, [Score=254, Expect=9e-79]; ENSG00000145451, GLRA3, glycine receptor alpha 3, [Score=251, Expect=1e-77]; ENSG00000101958, GLRA2, glycine receptor alpha 2, [Score=243, Expect=9e-75]} {Mouse: ENSMUSG00000000263, Glra1, glycine receptor, alpha 1 subunit, [Score=248, Expect=9e-77]; ENSMUSG00000018589, Glra2, glycine receptor, alpha 2 subunit, [Score=244, Expect=5e-75]; ENSMUSG00000038257, Glra3, glycine receptor, alpha 3 subunit, [Score=242, Expect=4e-74]; ENSMUSG00000018595, Glra4, glycine receptor, alpha 4 subunit, [Score=236, Expect=2e-72]} {Dmel: FBgn0024963, GluClalpha, [Score=257, Expect=4e-80]} {Celegans: WBGene00000233, avr-15, GluClalpha2B protein, [Score=252, Expect=3e-78]} {Smed: dd_Smed_v6_11342_0_1, dd_Smed_v6_11342_0_1, [Score=449, Expect=1e-155]} {RNA1509_54479} {RNA1310_56579} {RNA815_20247}
16.	MligTC455_34648	7	0.14	Mlig455_056654	Neo: - Age: -	CASP7	0.955	-	-	0.955	-	-	-	Mlig455_056654 {REF} {Length: 2891} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=59.8]; Caspase domain [PF00656.24, score=56.7]; Ras family [PF00071.24, score=55.3]; Ankyrin repeat [PF00023.32, score=37.1]; Ankyrin repeats (many copies) [PF13857.8, score=36.4]; Ankyrin repeat [PF13606.8, score=28.9]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=25.6]; Ankyrin repeats (many copies) [PF13637.8, score=23.9]; 50S ribosome-binding GTPase [PF01926.25, score=19.0]} {Human: ENSG00000165806, CASP7, caspase 7, [Score=91.7, Expect=3e-19]} {Mouse: ENSMUSG00000025076, Casp7, caspase 7, [Score=92.0, Expect=5e-20]} {Dmel: FBgn0020381, Dredd, Death related ced-3/Nedd2-like caspase, [Score=64.3, Expect=1e-10]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=53.1, Expect=6e-07]} {Smed: dd_Smed_v6_4986_0_1, dd_Smed_v6_4986_0_1, [Score=80.1, Expect=1e-16]} {RNA1310_17851} {RNA815_30305}
17.	MligTC455_35635	125	2.6	Mlig455_007067, Mlig455_019355, Mlig455_024593, Mlig455_030605, Mlig455_057051, Mlig455_057883, Mlig455_062992	Neo: - Age: - Region-enriched R5: 2.259/0.03003		0.953	-	-	0.953	-	-	-	Mlig455_007067 {REF} {Length: 162} {NoTransDecoderORF} {RNA1509_45210} {RNA1310_101589} {RNA815_41251} Mlig455_019355 {REF} {Length: 853} {NoTransDecoderORF} {RNA1509_45210} {RNA1310_28413.1} {RNA815_41251} Mlig455_024593 {REF} {Length: 140} {NoTransDecoderORF} {RNA1509_45210} {RNA1310_101589} {RNA815_41251} Mlig455_030605 {REF} {Length: 526} {NoTransDecoderORF} {RNA1509_55040} {RNA1310_80769} {RNA815_41251} Mlig455_057051 {REF} {Length: 1881} {Pfam: 7tm Chemosensory receptor [PF08395.14, score=23.1]} {RNA1509_45210} {RNA1310_80769} {RNA815_41251} Mlig455_057883 {REF} {Length: 373} {RNA1509_55040} {RNA1310_80769} {RNA815_41251} Mlig455_062992 {REF} {Length: 160} {NoTransDecoderORF} {RNA1509_45210} {RNA1310_101589} {RNA815_41251}
18.	MligTC455_40508	42	0.88	Mlig455_041263, Mlig455_053074	Neo: - Age: Up-Down-Up		0.953	-	-	0.953	-	-	-	Mlig455_041263 {REF} {Length: 3567} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=22.8]; Ankyrin repeats (many copies) [PF13637.8, score=21.5]} {RNA1310_40323} {RNA815_53708} Mlig455_053074 {REF} {Length: 6700} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=21.1]; Ankyrin repeats (3 copies) [PF12796.9, score=20.3]} {RNA1310_40323} {RNA815_53708}
19.	MligTC455_49678	1409	29.35	Mlig455_006987, Mlig455_017985	Neo: - Age: Down-Up-Down, logFC(26M/2M)=0.593		0.953	-	-	0.953	-	-	-	Mlig455_006987 {REF} {Length: 1025} {RNA1509_19241} {RNA1310_46680} {RNA815_40070} Mlig455_017985 {REF} {Length: 1025} {RNA1509_19241} {RNA1310_46680, RNA1509_19241} {RNA1509_19241, RNA815_40070}

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