M. lignano Tomo-Seq
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Results for MligTC455_34544

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_34544 22 0.47 Mlig455_029406

Neo: -

Age: -

 Mlig455_029406 {REF} {Length: 2118} {RNA1509_49846} {RNA1310_39189} {RNA815_32261}

Cumulative graph for MligTC455_34544

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.82 1.092 0.99982 1.00000
RegionR2 -1.457 1.092 0.99983 1.00000
RegionR3 1.574 1.092 0.52242 1.00000
RegionR4 2.791 1.092 0.27822 0.58522
RegionR5 0.731 1.092 0.60446 0.96182
RegionR6 1.664 1.092 0.65947 1.00000
RegionR7 -2.121 1.092 0.99982 1.00000
RegionR8 -2.362 1.092 0.99997 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.516 1.092 0.99982 1.00000
RegenerationR2 1.096 1.092 0.99990 1.00000
RegenerationR3 1.077 1.092 0.61249 0.91379
RegenerationR4 0.03 1.092 0.99826 1.00000
RegenerationR5 0.559 1.092 0.76972 0.97885
RegenerationR6 0.215 1.092 0.55826 0.84428
RegenerationBL 2.659 1.092 0.26983 0.62915
RegenerationTP 0.752 1.092 0.99987 1.00000


Genes with expression patterns similar to MligTC455_34544

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_34544 22 0.47 Mlig455_029406

Neo: -

Age: -

 4 1.000 1.000 - - 1.000 1.000 Mlig455_029406 {REF} {Length: 2118} {RNA1509_49846} {RNA1310_39189} {RNA815_32261}
2. MligTC455_27433 182 3.78 Mlig455_012707

Neo: -

Age: logFC(26M/2M)=-0.487

 TRERF1 0.966 - - - - 0.966 - Mlig455_012707 {REF} {Length: 6713} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=63.8]; C2H2-type zinc finger [PF13894.8, score=37.0]; ELM2 domain [PF01448.26, score=27.9]; Zinc-finger double domain [PF13465.8, score=25.8]; C2H2-type zinc finger [PF13912.8, score=23.1]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=22.3]} {Human: ENSG00000124496, TRERF1, transcriptional regulating factor 1, [RH, Score=118, Expect=2e-26]; ENSG00000118156, ZNF541, zinc finger protein 541, [RH, Score=115, Expect=3e-25]} {Mouse: ENSMUSG00000116235, Trerf1, transcriptional regulating factor 1, [RH, Score=118, Expect=2e-26]; ENSMUSG00000078796, Zfp541, zinc finger protein 541, [RH, Score=114, Expect=4e-25]} {Dmel: FBgn0037698, CG16779, [RH, Score=124, Expect=3e-28]} {Celegans: WBGene00010012, saeg-1, Suppressor of activated egl-4 protein 1, [RH, Score=119, Expect=3e-27]} {Smed: dd_Smed_v6_6649_0_1, dd_Smed_v6_6649_0_1, [RH, Score=198, Expect=1e-51]} {RNA1509_22271} {RNA1310_15660} {RNA815_14217}
3. MligTC455_27202 272 5.68 Mlig455_033974, Mlig455_056726

Neo: -

Age: Down-Up-Up

Region-enriched R4: 3.815/0.00502

 ACTG1 0.955 - - - - 0.955 -

Mlig455_033974 {REF} {Length: 1811} {Pfam: Actin [PF00022.21, score=480.6]} {Human: ENSG00000184009, ACTG1, actin gamma 1, [Score=710, Expect=0.0]; ENSG00000075624, ACTB, actin beta, [Score=707, Expect=0.0]; ENSG00000159251, ACTC1, actin, alpha, cardiac muscle 1, [Score=689, Expect=0.0]; ENSG00000107796, ACTA2, actin, alpha 2, smooth muscle, aorta, [Score=689, Expect=0.0]; ENSG00000163017, ACTG2, actin, gamma 2, smooth muscle, enteric, [Score=689, Expect=0.0]; ENSG00000143632, ACTA1, actin, alpha 1, skeletal muscle, [Score=688, Expect=0.0]; ENSG00000169067, ACTBL2, actin, beta like 2, [Score=681, Expect=0.0]} {Mouse: ENSMUSG00000062825, Actg1, actin, gamma, cytoplasmic 1, [Score=710, Expect=0.0]; ENSMUSG00000029580, Actb, actin, beta, [Score=707, Expect=0.0]; ENSMUSG00000059430, Actg2, actin, gamma 2, smooth muscle, enteric, [Score=689, Expect=0.0]; ENSMUSG00000068614, Actc1, actin, alpha, cardiac muscle 1, [Score=689, Expect=0.0]; ENSMUSG00000035783, Acta2, actin, alpha 2, smooth muscle, aorta, [Score=689, Expect=0.0]; ENSMUSG00000031972, Acta1, actin, alpha 1, skeletal muscle, [Score=688, Expect=0.0]; ENSMUSG00000055194, Actbl2, actin, beta-like 2, [Score=687, Expect=0.0]} {Dmel: FBgn0000044, Act57B, Actin 57B, [Score=708, Expect=0.0]} {Celegans: WBGene00000063, act-1, Actin-1, [Score=710, Expect=0.0]} {Smed: dd_Smed_v6_3_0_1, dd_Smed_v6_3_0_1, [Score=701, Expect=0.0]} {RNA1509_12157} {RNA1310_20267.2} {RNA815_4929.3}

Mlig455_056726 {REF} {Length: 1589} {Pfam: Actin [PF00022.21, score=483.1]} {Human: ENSG00000184009, ACTG1, actin gamma 1, [Score=712, Expect=0.0]; ENSG00000075624, ACTB, actin beta, [Score=709, Expect=0.0]; ENSG00000163017, ACTG2, actin, gamma 2, smooth muscle, enteric, [Score=691, Expect=0.0]; ENSG00000107796, ACTA2, actin, alpha 2, smooth muscle, aorta, [Score=690, Expect=0.0]; ENSG00000159251, ACTC1, actin, alpha, cardiac muscle 1, [Score=690, Expect=0.0]; ENSG00000143632, ACTA1, actin, alpha 1, skeletal muscle, [Score=689, Expect=0.0]; ENSG00000169067, ACTBL2, actin, beta like 2, [Score=681, Expect=0.0]} {Mouse: ENSMUSG00000062825, Actg1, actin, gamma, cytoplasmic 1, [Score=712, Expect=0.0]; ENSMUSG00000029580, Actb, actin, beta, [Score=709, Expect=0.0]; ENSMUSG00000059430, Actg2, actin, gamma 2, smooth muscle, enteric, [Score=691, Expect=0.0]; ENSMUSG00000035783, Acta2, actin, alpha 2, smooth muscle, aorta, [Score=690, Expect=0.0]; ENSMUSG00000068614, Actc1, actin, alpha, cardiac muscle 1, [Score=690, Expect=0.0]; ENSMUSG00000031972, Acta1, actin, alpha 1, skeletal muscle, [Score=689, Expect=0.0]; ENSMUSG00000055194, Actbl2, actin, beta-like 2, [Score=687, Expect=0.0]} {Dmel: FBgn0000043, Act42A, Actin 42A, [Score=711, Expect=0.0]} {Celegans: WBGene00000065, act-3, Actin-1, [Score=711, Expect=0.0]} {Smed: dd_Smed_v6_3_0_1, dd_Smed_v6_3_0_1, [Score=701, Expect=0.0]} {RNA1509_12157} {RNA1310_20267.2} {RNA815_4929.3}
4. MligTC455_12200 402 8.38 Mlig455_056707, Mlig455_060314

Neo: -

Age: Down-Up-Up

Region-enriched R3: 6.181/0.00003
Region-enriched R4: 4.726/0.01199

 0.95 - - - - 0.950 -

Mlig455_056707 {REF} {Length: 1565} {RNA1509_33681} {RNA1310_21613} {RNA815_8987.1}

Mlig455_060314 {REF} {Length: 1642} {RNA1509_33681} {RNA1310_21613, RNA1509_33681} {RNA1509_33681, RNA815_8987.1}

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