M. lignano Tomo-Seq
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Results for MligTC455_34965

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_34965 67 1.40 Mlig455_061836

Neo: -

Age: -

Region-enriched R4: 5.310/0.00088
Region-enriched R5: 4.506/0.00012

 TRMU Mlig455_061836 {REF} {Length: 1305} {TRANSSPLICED} {Pfam: tRNA methyl transferase [PF03054.18, score=391.7]; Thiamine biosynthesis protein (ThiI) [PF02568.16, score=31.9]; Asparagine synthase [PF00733.23, score=20.9]; NAD synthase [PF02540.19, score=18.0]} {Human: ENSG00000100416, TRMU, tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, [RH, Score=332, Expect=1e-110]} {Mouse: ENSMUSG00000022386, Trmu, tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, [RH, Score=332, Expect=4e-111]} {Dmel: FBgn0040337, CG3021, [RH, Score=348, Expect=9e-118]} {Celegans: WBGene00007114, mttu-1, Probable mitochondrial tRNA-specific 2-thiouridylase 1, [RH, Score=297, Expect=3e-98]} {Smed: dd_Smed_v6_12984_0_1, dd_Smed_v6_12984_0_1, [RH, Score=357, Expect=2e-121]} {RNA1509_13037} {RNA1310_15709.1} {RNA815_7452}

Cumulative graph for MligTC455_34965

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -7.327 1.59 1.00000 1.00000
RegionR2 -2.322 1.59 0.99111 1.00000
RegionR3 -0.408 1.59 0.90164 1.00000
RegionR4 5.31 1.59 0.00005 0.00088
RegionR5 4.506 1.59 0.00000 0.00012
RegionR6 0.971 1.59 0.47953 1.00000
RegionR7 1.637 1.59 0.23240 0.85626
RegionR8 -2.366 1.59 0.99973 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.318 1.59 1.00000 1.00000
RegenerationR2 -1.479 1.59 0.12004 0.53883
RegenerationR3 -1.675 1.59 0.22592 0.66108
RegenerationR4 -3.109 1.59 0.00435 0.09130
RegenerationR5 -3.149 1.59 0.00016 0.01807
RegenerationR6 -1.249 1.59 0.23805 0.58550
RegenerationBL -1.903 1.59 0.97657 1.00000
RegenerationTP -4.679 1.59 1.00000 1.00000


Genes with expression patterns similar to MligTC455_34965

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_34965 67 1.4 Mlig455_061836

Neo: -

Age: -

Region-enriched R4: 5.310/0.00088
Region-enriched R5: 4.506/0.00012

 TRMU 4 - - 1.000 1.000 1.000 1.000 Mlig455_061836 {REF} {Length: 1305} {TRANSSPLICED} {Pfam: tRNA methyl transferase [PF03054.18, score=391.7]; Thiamine biosynthesis protein (ThiI) [PF02568.16, score=31.9]; Asparagine synthase [PF00733.23, score=20.9]; NAD synthase [PF02540.19, score=18.0]} {Human: ENSG00000100416, TRMU, tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, [RH, Score=332, Expect=1e-110]} {Mouse: ENSMUSG00000022386, Trmu, tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, [RH, Score=332, Expect=4e-111]} {Dmel: FBgn0040337, CG3021, [RH, Score=348, Expect=9e-118]} {Celegans: WBGene00007114, mttu-1, Probable mitochondrial tRNA-specific 2-thiouridylase 1, [RH, Score=297, Expect=3e-98]} {Smed: dd_Smed_v6_12984_0_1, dd_Smed_v6_12984_0_1, [RH, Score=357, Expect=2e-121]} {RNA1509_13037} {RNA1310_15709.1} {RNA815_7452}
2. MligTC455_46157 2381 49.61 Mlig455_043690

Neo: -

Age: -

Region-enriched R4: 1.390/0.00101

 EHD1 0.978 - - - - 0.978 - Mlig455_043690 {REF} {Length: 3391} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF5600) [PF18150.3, score=143.5]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=62.1]; N-terminal EH-domain containing protein [PF16880.7, score=58.8]; Dynamin family [PF00350.25, score=54.1]; 50S ribosome-binding GTPase [PF01926.25, score=34.5]; Elongation factor Tu GTP binding domain [PF00009.29, score=21.1]; EF hand [PF00036.34, score=20.0]} {Human: ENSG00000110047, EHD1, EH domain containing 1, [RH, Score=709, Expect=0.0]; ENSG00000013016, EHD3, EH domain containing 3, [RH, Score=704, Expect=0.0]; ENSG00000103966, EHD4, EH domain containing 4, [RH, Score=693, Expect=0.0]} {Mouse: ENSMUSG00000024772, Ehd1, EH-domain containing 1, [RH, Score=710, Expect=0.0]; ENSMUSG00000107039, Ehd1, EH-domain containing 1, [RH, Score=710, Expect=0.0]; ENSMUSG00000024065, Ehd3, EH-domain containing 3, [RH, Score=697, Expect=0.0]; ENSMUSG00000027293, Ehd4, EH-domain containing 4, [RH, Score=690, Expect=0.0]} {Dmel: FBgn0016693, Past1, Putative Achaete Scute Target 1, [RH, Score=736, Expect=0.0]} {Celegans: WBGene00004373, rme-1, Receptor Mediated Endocytosis; Receptor-mediated endocytosis 1 isoform I, [RH, Score=729, Expect=0.0]} {Smed: dd_Smed_v6_3148_0_1, dd_Smed_v6_3148_0_1, [RH, Score=739, Expect=0.0]} {RNA1509_10447, RNA1509_18982, RNA1509_19631, RNA1509_2034, RNA1509_22003} {RNA1310_6511.3, RNA1509_10447, RNA1509_18982, RNA1509_19631, RNA1509_22003} {RNA1509_10447, RNA1509_18982, RNA1509_19631, RNA1509_22003, RNA815_5849.2}
3. MligTC455_31947 130 2.71 Mlig455_027667

Neo: Int S/G2/M

Age: -

 0.958 - - - - - 0.958 Mlig455_027667 {REF} {Length: 3211} {TRANSSPLICED} {RNA1509_21281} {RNA1310_16403.1} {RNA815_2223.1}
4. MligTC455_35868 384 7.99 Mlig455_011681, Mlig455_037350, Mlig455_037933, Mlig455_066124

Neo: -

Age: -

 0.958 - - - 0.958 - -

Mlig455_011681 {REF} {Length: 1192} {NoTransDecoderORF} {RNA1509_51528} {RNA1310_138888} {RNA815_38499}

Mlig455_037350 {REF} {Length: 573} {NoTransDecoderORF} {RNA1310_33225.1} {RNA815_38499}

Mlig455_037933 {REF} {Length: 218} {NoTransDecoderORF} {RNA1310_64101} {RNA815_38499}

Mlig455_066124 {REF} {Length: 4952} {Pfam: Domain of unknown function (DUF4956) [PF16316.7, score=19.2]} {RNA1509_56926} {RNA1310_49079} {RNA815_20842.1}
5. MligTC455_19462 23 0.48 Mlig455_020950

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.385

 ATP6AP2 0.95 - - - - 0.950 - Mlig455_020950 {REF} {Length: 1681} {Pfam: Renin receptor-like protein [PF07850.16, score=80.3]} {Human: ENSG00000182220, ATP6AP2, ATPase H+ transporting accessory protein 2, [RH, Score=73.2, Expect=3e-14]} {Mouse: ENSMUSG00000031007, Atp6ap2, ATPase, H+ transporting, lysosomal accessory protein 2, [RH, Score=73.6, Expect=3e-14]} {Dmel: FBgn0037671, VhaM8.9, Vacuolar H[+] ATPase M8.9 accessory subunit, [RH, Score=67.0, Expect=3e-12]} {Celegans: WBGene00010993, vha-20, Vacuolar H ATPase, [RH, Score=55.1, Expect=2e-08]} {Smed: dd_Smed_v6_1067_0_1, dd_Smed_v6_1067_0_1, [RH, Score=77.4, Expect=3e-18]} {RNA1509_6698} {RNA1310_8535.3} {RNA815_3484.1}

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