M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_35522

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_35522 1127 23.49 Mlig455_032860

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=0.244

 AP3D1 Mlig455_032860 {REF} {Length: 6535} {TRANSSPLICED} {Pfam: Adaptin N terminal region [PF01602.22, score=428.0]; AP-3 complex subunit delta-1 [PF06375.13, score=64.2]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=57.0]; HEAT repeats [PF13646.8, score=24.2]; HEAT repeat [PF02985.24, score=22.8]} {Human: ENSG00000065000, AP3D1, adaptor related protein complex 3 subunit delta 1, [RH, Score=951, Expect=0.0]} {Mouse: ENSMUSG00000020198, Ap3d1, adaptor-related protein complex 3, delta 1 subunit, [RH, Score=951, Expect=0.0]} {Dmel: FBgn0001087, g, garnet, [RH, Score=894, Expect=0.0]} {Celegans: WBGene00000162, apd-3, AP-3 complex subunit delta, [RH, Score=810, Expect=0.0]} {Smed: dd_Smed_v6_2534_0_1, dd_Smed_v6_2534_0_1, [RH, Score=892, Expect=0.0]} {RNA1509_2967} {RNA1310_1080.1} {RNA815_531.1}

Cumulative graph for MligTC455_35522

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.801 4.798 0.42421 1.00000
RegionR2 0.759 4.798 0.12939 0.44650
RegionR3 0.295 4.798 0.46312 0.97196
RegionR4 -0.378 4.798 0.42424 0.75222
RegionR5 -0.015 4.798 0.96781 1.00000
RegionR6 0.126 4.798 0.75999 1.00000
RegionR7 0.066 4.798 0.89243 1.00000
RegionR8 -0.053 4.798 0.92961 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.888 4.798 0.51689 1.00000
RegenerationR2 0.22 4.798 0.63321 0.92867
RegenerationR3 0.412 4.798 0.41701 0.81304
RegenerationR4 0.658 4.798 0.20357 0.64989
RegenerationR5 0.401 4.798 0.40632 0.80319
RegenerationR6 1.037 4.798 0.03482 0.23380
RegenerationBL 0.578 4.798 0.26663 0.62542
RegenerationTP -0.091 4.798 0.87918 1.00000


Genes with expression patterns similar to MligTC455_35522

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_35522 1127 23.49 Mlig455_032860

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=0.244

 AP3D1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_032860 {REF} {Length: 6535} {TRANSSPLICED} {Pfam: Adaptin N terminal region [PF01602.22, score=428.0]; AP-3 complex subunit delta-1 [PF06375.13, score=64.2]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=57.0]; HEAT repeats [PF13646.8, score=24.2]; HEAT repeat [PF02985.24, score=22.8]} {Human: ENSG00000065000, AP3D1, adaptor related protein complex 3 subunit delta 1, [RH, Score=951, Expect=0.0]} {Mouse: ENSMUSG00000020198, Ap3d1, adaptor-related protein complex 3, delta 1 subunit, [RH, Score=951, Expect=0.0]} {Dmel: FBgn0001087, g, garnet, [RH, Score=894, Expect=0.0]} {Celegans: WBGene00000162, apd-3, AP-3 complex subunit delta, [RH, Score=810, Expect=0.0]} {Smed: dd_Smed_v6_2534_0_1, dd_Smed_v6_2534_0_1, [RH, Score=892, Expect=0.0]} {RNA1509_2967} {RNA1310_1080.1} {RNA815_531.1}
2. MligTC455_35521 1684 35.08 Mlig455_006137

Neo: -

Age: -

 AP3D1 3.763 0.998 0.995 0.802 - - 0.968 Mlig455_006137 {REF} {Length: 5624} {TRANSSPLICED} {Pfam: Adaptin N terminal region [PF01602.22, score=428.0]; AP-3 complex subunit delta-1 [PF06375.13, score=64.5]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=56.9]; HEAT repeats [PF13646.8, score=24.2]; HEAT repeat [PF02985.24, score=22.8]} {Human: ENSG00000065000, AP3D1, adaptor related protein complex 3 subunit delta 1, [RH, Score=951, Expect=0.0]} {Mouse: ENSMUSG00000020198, Ap3d1, adaptor-related protein complex 3, delta 1 subunit, [RH, Score=950, Expect=0.0]} {Dmel: FBgn0001087, g, garnet, [RH, Score=894, Expect=0.0]} {Celegans: WBGene00000162, apd-3, AP-3 complex subunit delta, [RH, Score=810, Expect=0.0]} {Smed: dd_Smed_v6_2534_0_1, dd_Smed_v6_2534_0_1, [RH, Score=892, Expect=0.0]} {RNA1509_20502, RNA1509_2967, RNA1509_31068, RNA1509_36255} {RNA1310_1080.1, RNA1509_20502, RNA1509_2967, RNA1509_31068, RNA1509_36255} {RNA1509_20502, RNA1509_2967, RNA1509_31068, RNA1509_36255, RNA815_531.1}
3. MligTC455_30629 803 16.73 Mlig455_066612

Neo: -

Age: -

Region-enriched R5: 1.551/0.02318

 GALK1 2.44 - - 0.734 0.742 0.964 - Mlig455_066612 {REF} {Length: 1768} {TRANSSPLICED} {Pfam: Galactokinase galactose-binding signature [PF10509.11, score=75.3]; GHMP kinases C terminal [PF08544.15, score=50.8]; GHMP kinases N terminal domain [PF00288.28, score=47.2]} {Human: ENSG00000108479, GALK1, galactokinase 1, [RH, Score=367, Expect=1e-124]} {Mouse: ENSMUSG00000020766, Galk1, galactokinase 1, [RH, Score=365, Expect=4e-124]} {Dmel: FBgn0263199, Galk, Galactokinase, [Score=81.6, Expect=2e-16]} {Celegans: WBGene00006461, tag-96, [Score=101, Expect=3e-23]} {Smed: dd_Smed_v6_5394_0_1, dd_Smed_v6_5394_0_1, [RH, Score=335, Expect=1e-112]} {RNA1509_16527, RNA1509_24089, RNA1509_48275} {RNA1310_15048, RNA1509_16527, RNA1509_24089, RNA1509_48275} {RNA1509_16527, RNA1509_24089, RNA1509_48275, RNA815_9890}
4. MligTC455_18924 268 5.58 Mlig455_037407

Neo: -

Age: -

Region-enriched R6: 3.535/0.00019

 RAC1 1.69 - - 0.735 0.955 - - Mlig455_037407 {REF} {Length: 886} {Pfam: Ras family [PF00071.24, score=170.1]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=77.9]; ADP-ribosylation factor family [PF00025.23, score=33.4]} {Human: ENSG00000136238, RAC1, Rac family small GTPase 1, [Score=243, Expect=6e-82]; ENSG00000128340, RAC2, Rac family small GTPase 2, [Score=243, Expect=7e-82]; ENSG00000169750, RAC3, Rac family small GTPase 3, [Score=241, Expect=5e-81]; ENSG00000177105, RHOG, ras homolog family member G, [Score=239, Expect=2e-80]} {Mouse: ENSMUSG00000001847, Rac1, Rac family small GTPase 1, [Score=243, Expect=4e-82]; ENSMUSG00000033220, Rac2, Rac family small GTPase 2, [Score=241, Expect=2e-81]; ENSMUSG00000018012, Rac3, Rac family small GTPase 3, [Score=241, Expect=3e-81]; ENSMUSG00000073982, Rhog, ras homolog family member G, [Score=239, Expect=2e-80]} {Dmel: FBgn0010333, Rac1, [Score=246, Expect=2e-83]} {Celegans: WBGene00000424, ced-10, Ras-related protein ced-10, [Score=254, Expect=1e-86]} {Smed: dd_Smed_v6_610_0_1, dd_Smed_v6_610_0_1, [Score=233, Expect=2e-78]} {RNA1310_44039} {RNA815_20612.1}
5. MligTC455_46157 2381 49.61 Mlig455_043690

Neo: -

Age: -

Region-enriched R4: 1.390/0.00101

 EHD1 0.972 - - - 0.972 - - Mlig455_043690 {REF} {Length: 3391} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF5600) [PF18150.3, score=143.5]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=62.1]; N-terminal EH-domain containing protein [PF16880.7, score=58.8]; Dynamin family [PF00350.25, score=54.1]; 50S ribosome-binding GTPase [PF01926.25, score=34.5]; Elongation factor Tu GTP binding domain [PF00009.29, score=21.1]; EF hand [PF00036.34, score=20.0]} {Human: ENSG00000110047, EHD1, EH domain containing 1, [RH, Score=709, Expect=0.0]; ENSG00000013016, EHD3, EH domain containing 3, [RH, Score=704, Expect=0.0]; ENSG00000103966, EHD4, EH domain containing 4, [RH, Score=693, Expect=0.0]} {Mouse: ENSMUSG00000024772, Ehd1, EH-domain containing 1, [RH, Score=710, Expect=0.0]; ENSMUSG00000107039, Ehd1, EH-domain containing 1, [RH, Score=710, Expect=0.0]; ENSMUSG00000024065, Ehd3, EH-domain containing 3, [RH, Score=697, Expect=0.0]; ENSMUSG00000027293, Ehd4, EH-domain containing 4, [RH, Score=690, Expect=0.0]} {Dmel: FBgn0016693, Past1, Putative Achaete Scute Target 1, [RH, Score=736, Expect=0.0]} {Celegans: WBGene00004373, rme-1, Receptor Mediated Endocytosis; Receptor-mediated endocytosis 1 isoform I, [RH, Score=729, Expect=0.0]} {Smed: dd_Smed_v6_3148_0_1, dd_Smed_v6_3148_0_1, [RH, Score=739, Expect=0.0]} {RNA1509_10447, RNA1509_18982, RNA1509_19631, RNA1509_2034, RNA1509_22003} {RNA1310_6511.3, RNA1509_10447, RNA1509_18982, RNA1509_19631, RNA1509_22003} {RNA1509_10447, RNA1509_18982, RNA1509_19631, RNA1509_22003, RNA815_5849.2}
6. MligTC455_44620 1790 37.29 Mlig455_061177

Neo: Int S/G2/M

Age: Down-Down-Up

Region-enriched R4: 1.617/0.00022
Region-enriched R5: 1.308/0.00016

 ECI2 0.969 - - - 0.969 - - Mlig455_061177 {REF} {Length: 1547} {TRANSSPLICED} {Pfam: Enoyl-CoA hydratase/isomerase [PF00378.22, score=132.9]; Acyl CoA binding protein [PF00887.21, score=88.8]; Enoyl-CoA hydratase/isomerase [PF16113.7, score=72.8]} {Human: ENSG00000198721, ECI2, enoyl-CoA delta isomerase 2, [RH, Score=353, Expect=5e-120]} {Mouse: ENSMUSG00000021417, Eci2, enoyl-Coenzyme A delta isomerase 2, [RH, Score=352, Expect=8e-120]} {Dmel: FBgn0035169, CG13890, [RH, Score=161, Expect=7e-47]} {Celegans: WBGene00001153, ech-4, Enoyl-CoA Hydratase, [RH, Score=280, Expect=2e-91]} {Smed: dd_Smed_v6_5239_0_1, dd_Smed_v6_5239_0_1, [RH, Score=423, Expect=9e-148]} {RNA1509_3390} {RNA1310_18160} {RNA815_6994}
7. MligTC455_28690 336 7 Mlig455_001122

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.888

 SLC5A8 0.965 - - - 0.965 - - Mlig455_001122 {REF} {Length: 3975} {Pfam: Sodium:solute symporter family [PF00474.19, score=114.8]} {Human: ENSG00000262217, SLC5A8, solute carrier family 5 member 8, [Score=367, Expect=1e-117]; ENSG00000256870, SLC5A8, solute carrier family 5 member 8, [Score=367, Expect=1e-117]} {Mouse: ENSMUSG00000020062, Slc5a8, solute carrier family 5 (iodide transporter), member 8, [Score=360, Expect=3e-115]; ENSMUSG00000041644, Slc5a12, solute carrier family 5 (sodium/glucose cotransporter), member 12, [Score=346, Expect=2e-109]} {Dmel: FBgn0250757, CG42235, [RH, Score=309, Expect=9e-95]} {Celegans: WBGene00014092, ZK822.5, [Score=213, Expect=2e-60]} {Smed: dd_Smed_v6_14173_0_1, dd_Smed_v6_14173_0_1, [Score=321, Expect=1e-100]} {RNA1509_12386} {RNA1310_8136.1} {RNA815_2751}
8. MligTC455_50084 4659 97.05 Mlig455_010661

Neo: -

Age: -

 PSMA3 0.963 - - - 0.963 - - Mlig455_010661 {REF} {Length: 1164} {TRANSSPLICED} {Pfam: Proteasome subunit [PF00227.28, score=165.2]; Proteasome subunit A N-terminal signature [PF10584.11, score=40.5]} {Human: ENSG00000100567, PSMA3, proteasome subunit alpha 3, [RH, Score=295, Expect=1e-100]} {Mouse: ENSMUSG00000060073, Psma3, proteasome (prosome, macropain) subunit, alpha type 3, [RH, Score=295, Expect=4e-101]} {Dmel: FBgn0023175, Prosalpha7, Proteasome alpha7 subunit, [RH, Score=246, Expect=1e-81]} {Celegans: WBGene00003928, pas-7, Proteasome subunit alpha type-3, [RH, Score=209, Expect=1e-67]} {Smed: dd_Smed_v6_1557_0_1, dd_Smed_v6_1557_0_1, [RH, Score=300, Expect=2e-103]} {RNA1509_12906, RNA1509_16535, RNA1509_49409, RNA1509_5669} {RNA1310_29338, RNA1509_12906, RNA1509_49409, RNA1509_5669} {RNA1509_12906, RNA1509_49409, RNA1509_5669, RNA815_13245}
9. MligTC455_41418 653 13.61 Mlig455_022023

Neo: -

Age: -

 0.957 - - - 0.957 - - Mlig455_022023 {REF} {Length: 2593} {TRANSSPLICED} {RNA1509_10112} {RNA1310_27932} {RNA815_11765.1}
10. MligTC455_34713 3644 75.91 Mlig455_012307, Mlig455_031867, Mlig455_031949

Neo: Neoblast, stringent

Age: -

 KPNB1 0.956 - - - 0.956 - -

Mlig455_012307 {REF} {Length: 183} {NoTransDecoderORF}

Mlig455_031867 {REF} {Length: 3866} {Pfam: HEAT-like repeat [PF13513.8, score=57.4]; HEAT repeat [PF02985.24, score=40.9]; Importin-beta N-terminal domain [PF03810.21, score=39.1]; HEAT repeats [PF13646.8, score=37.2]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=23.3]; Vacuolar 14 Fab1-binding region [PF12755.9, score=23.0]} {Human: ENSG00000108424, KPNB1, karyopherin subunit beta 1, [RH, Score=976, Expect=0.0]} {Mouse: ENSMUSG00000001440, Kpnb1, karyopherin (importin) beta 1, [RH, Score=972, Expect=0.0]} {Dmel: FBgn0262743, Fs(2)Ket, Female sterile (2) Ketel, [RH, Score=874, Expect=0.0]} {Celegans: WBGene00002075, imb-1, IMportin Beta family, [RH, Score=720, Expect=0.0]} {Smed: dd_Smed_v6_3466_0_1, dd_Smed_v6_3466_0_1, [RH, Score=863, Expect=0.0]} {RNA1509_1919} {RNA1310_2969} {RNA815_850.1}

Mlig455_031949 {REF} {Length: 3861} {Pfam: HEAT-like repeat [PF13513.8, score=58.9]; HEAT repeat [PF02985.24, score=41.2]; Importin-beta N-terminal domain [PF03810.21, score=39.0]; HEAT repeats [PF13646.8, score=36.4]; Vacuolar 14 Fab1-binding region [PF12755.9, score=24.0]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=23.1]} {Human: ENSG00000108424, KPNB1, karyopherin subunit beta 1, [RH, Score=983, Expect=0.0]} {Mouse: ENSMUSG00000001440, Kpnb1, karyopherin (importin) beta 1, [RH, Score=979, Expect=0.0]} {Dmel: FBgn0262743, Fs(2)Ket, Female sterile (2) Ketel, [RH, Score=881, Expect=0.0]} {Celegans: WBGene00002075, imb-1, IMportin Beta family, [RH, Score=728, Expect=0.0]} {Smed: dd_Smed_v6_3466_0_1, dd_Smed_v6_3466_0_1, [RH, Score=871, Expect=0.0]} {RNA1509_10050, RNA1509_1919} {RNA1310_2969, RNA1509_10050} {RNA1509_10050, RNA815_850.1}
11. MligTC455_13686 81 1.69 Mlig455_025201

Neo: -

Age: -

 0.955 - - - 0.955 - - Mlig455_025201 {REF} {Length: 513} {NoTransDecoderORF} {RNA1509_57863} {RNA1310_12861} {RNA815_64064}
12. MligTC455_52500 1490 31.04 Mlig455_033780

Neo: -

Age: -

Region-enriched R5: 1.829/0.00370
Region-enriched R6: 1.816/0.03386
Region-enriched R4: 1.792/0.02525

 GRHPR 0.953 - - - 0.953 - - Mlig455_033780 {REF} {Length: 1458} {TRANSSPLICED} {Pfam: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [PF02826.21, score=169.4]; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain [PF00389.32, score=55.1]; NAD binding domain of 6-phosphogluconate dehydrogenase [PF03446.17, score=19.9]} {Human: ENSG00000137106, GRHPR, glyoxylate and hydroxypyruvate reductase, [Score=164, Expect=1e-47]} {Mouse: ENSMUSG00000035637, Grhpr, glyoxylate reductase/hydroxypyruvate reductase, [Score=156, Expect=1e-44]} {Dmel: FBgn0051674, CG31674, [Score=151, Expect=8e-43]} {Celegans: WBGene00007836, C31C9.2, [Score=102, Expect=8e-25]} {Smed: dd_Smed_v6_8767_0_1, dd_Smed_v6_8767_0_1, [Score=174, Expect=7e-52]} {RNA1509_6635} {RNA1310_17744} {RNA815_8969}
13. MligTC455_19668 814 16.96 Mlig455_048937

Neo: -

Age: -

 METAP2 0.952 - - - 0.952 - - Mlig455_048937 {REF} {Length: 1513} {Pfam: Metallopeptidase family M24 [PF00557.26, score=142.2]} {Human: ENSG00000111142, METAP2, methionyl aminopeptidase 2, [Score=504, Expect=3e-179]} {Mouse: ENSMUSG00000036112, Metap2, methionine aminopeptidase 2, [Score=501, Expect=9e-178]} {Dmel: FBgn0283478, und, uninitiated, [Score=492, Expect=1e-174]} {Celegans: WBGene00003130, map-2, Methionine AminoPeptidase, [Score=486, Expect=2e-172]} {Smed: dd_Smed_v6_2809_0_1, dd_Smed_v6_2809_0_1, [Score=504, Expect=2e-180]} {RNA1509_6431} {RNA1310_15348} {RNA815_5667}
14. MligTC455_28993 588 12.24 Mlig455_025438, Mlig455_025447

Neo: -

Age: -

Region-enriched R5: 1.327/0.02455

 GLDC 0.951 - - - 0.951 - -

Mlig455_025438 {REF} {Length: 4425} {Pfam: Glycine cleavage system P-protein [PF02347.18, score=630.6]; Cys/Met metabolism PLP-dependent enzyme [PF01053.22, score=27.5]; Beta-eliminating lyase [PF01212.23, score=23.3]} {Human: ENSG00000178445, GLDC, glycine decarboxylase, [RH, Score=1189, Expect=0.0]} {Mouse: ENSMUSG00000024827, Gldc, glycine decarboxylase, [RH, Score=1187, Expect=0.0]} {Dmel: FBgn0037801, CG3999, [RH, Score=1127, Expect=0.0]} {Celegans: WBGene00020022, gldc-1, Glycine cleavage system P protein, [RH, Score=1033, Expect=0.0]} {Smed: dd_Smed_v6_1833_0_1, dd_Smed_v6_1833_0_1, [RH, Score=1181, Expect=0.0]} {RNA1509_4851} {RNA1310_1965.1} {RNA815_1197}

Mlig455_025447 {REF} {Length: 4462} {Pfam: Glycine cleavage system P-protein [PF02347.18, score=629.2]; Cys/Met metabolism PLP-dependent enzyme [PF01053.22, score=27.5]; Beta-eliminating lyase [PF01212.23, score=23.1]} {Human: ENSG00000178445, GLDC, glycine decarboxylase, [RH, Score=1190, Expect=0.0]} {Mouse: ENSMUSG00000024827, Gldc, glycine decarboxylase, [RH, Score=1188, Expect=0.0]} {Dmel: FBgn0037801, CG3999, [RH, Score=1130, Expect=0.0]} {Celegans: WBGene00020022, gldc-1, Glycine cleavage system P protein, [RH, Score=1035, Expect=0.0]} {Smed: dd_Smed_v6_1833_0_1, dd_Smed_v6_1833_0_1, [RH, Score=1181, Expect=0.0]} {RNA1509_4851} {RNA1310_1965.1, RNA1509_4851} {RNA1509_4851, RNA815_1197}
15. MligTC455_11620 399 8.31 Mlig455_034419

Neo: Int S/G2/M

Age: -

 METTL17 0.95 - - - 0.950 - - Mlig455_034419 {REF} {Length: 3483} {TRANSSPLICED} {Pfam: Mitochondrial small ribosomal subunit Rsm22 [PF09243.12, score=151.5]; Methyltransferase domain [PF13489.8, score=26.0]} {Human: ENSG00000165792, METTL17, methyltransferase like 17, [RH, Score=174, Expect=3e-48]} {Mouse: ENSMUSG00000004561, Mettl17, methyltransferase like 17, [RH, Score=182, Expect=2e-51]} {Dmel: FBgn0032168, CG13126, [RH, Score=180, Expect=5e-51]} {Celegans: WBGene00009305, F32A7.4, [RH, Score=92.8, Expect=6e-20]} {Smed: dd_Smed_v6_14920_0_1, dd_Smed_v6_14920_0_1, [RH, Score=94.0, Expect=8e-22]} {RNA1509_17904} {RNA1310_11568.1} {RNA815_9155}
16. MligTC455_52106 357 7.43 Mlig455_061346

Neo: -

Age: -

 0.95 - - - 0.950 - - Mlig455_061346 {REF} {Length: 5751} {TRANSSPLICED} {RNA1509_8478} {RNA1310_1555.1, RNA1509_8478} {RNA1509_8478, RNA815_4516}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA