M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_36415

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_36415 57 1.19 Mlig455_036427, Mlig455_054598

Neo: -

Age: -

Mlig455_036427 {REF} {Length: 744} {NoTransDecoderORF} {RNA1310_147078}

Mlig455_054598 {REF} {Length: 1921} {Pfam: ISXO2-like transposase domain [PF12762.9, score=19.1]} {RNA1509_22299} {RNA1310_147078} {RNA815_26270}

Cumulative graph for MligTC455_36415

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.849 1.516 0.99965 1.00000
RegionR2 2.793 1.516 0.08953 0.36699
RegionR3 1.128 1.516 0.32138 0.85899
RegionR4 1.787 1.516 0.15520 0.40863
RegionR5 -1.628 1.516 0.99967 1.00000
RegionR6 2.501 1.516 0.06884 0.48951
RegionR7 -1.852 1.516 0.99978 1.00000
RegionR8 -1.88 1.516 0.99975 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.166 1.516 0.99998 1.00000
RegenerationR2 0.491 1.516 0.67957 0.94878
RegenerationR3 0.274 1.516 0.81610 0.98640
RegenerationR4 1.376 1.516 0.30751 0.74842
RegenerationR5 3.792 1.516 0.00682 0.15006
RegenerationR6 0.855 1.516 0.49417 0.80141
RegenerationBL 4.353 1.516 0.01584 0.13298
RegenerationTP -0.292 1.516 0.99996 1.00000


Genes with expression patterns similar to MligTC455_36415

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_36415 57 1.19 Mlig455_036427, Mlig455_054598

Neo: -

Age: -

 5 - 1.000 1.000 1.000 1.000 1.000

Mlig455_036427 {REF} {Length: 744} {NoTransDecoderORF} {RNA1310_147078}

Mlig455_054598 {REF} {Length: 1921} {Pfam: ISXO2-like transposase domain [PF12762.9, score=19.1]} {RNA1509_22299} {RNA1310_147078} {RNA815_26270}
2. MligTC455_29919 253 5.28 Mlig455_047771

Neo: -

Age: -

Region-enriched R8: 3.157/0.02236

 PRR9 1.868 - - - 0.965 0.903 - Mlig455_047771 {REF} {Length: 4344} {TRANSSPLICED} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=49.7, Expect=3e-07]} {Celegans: WBGene00018026, F35A5.4, [Score=52.0, Expect=3e-07]} {RNA1509_42296} {RNA1310_15876.1} {RNA815_5293}
3. MligTC455_53111 32 0.68 Mlig455_014472

Neo: -

Age: -

 1.681 - - - - 0.952 0.729 Mlig455_014472 {REF} {Length: 2012} {TRANSSPLICED} {RNA1310_65341}
4. MligTC455_54080 3 0.07 Mlig455_028629

Neo: -

Age: -

 0.994 - - - - - 0.994 Mlig455_028629 {REF} {Length: 879} {NoTransDecoderORF} {RNA1509_8078} {RNA1310_324.3} {RNA815_8663}
5. MligTC455_46281 22 0.45 Mlig455_016138

Neo: Irradiation

Age: -

 KDELR2 0.989 - - - - - 0.989 Mlig455_016138 {REF} {Length: 2664} {TRANSSPLICED} {Pfam: ER lumen protein retaining receptor [PF00810.20, score=173.9]; Intermediate filament protein [PF00038.23, score=132.5]; Lamin Tail Domain [PF00932.21, score=37.2]} {Human: ENSG00000136240, KDELR2, KDEL endoplasmic reticulum protein retention receptor 2, [Score=293, Expect=2e-93]} {Mouse: ENSMUSG00000079111, Kdelr2, KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2, [Score=296, Expect=1e-94]} {Dmel: FBgn0267330, KdelR, KDEL receptor, [Score=291, Expect=4e-93]} {Celegans: WBGene00001331, erd-2, ER lumen protein-retaining receptor, [Score=266, Expect=2e-83]} {Smed: dd_Smed_v6_1592_0_1, dd_Smed_v6_1592_0_1, [Score=283, Expect=8e-90]} {RNA1509_3479} {RNA1310_8292} {RNA815_3092.1}
6. MligTC455_08565 49 1.03 Mlig455_032295

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=1.719

 HPGD 0.985 - - 0.985 - - - Mlig455_032295 {REF} {Length: 1065} {Pfam: short chain dehydrogenase [PF00106.27, score=98.2]; Enoyl-(Acyl carrier protein) reductase [PF13561.8, score=70.9]; NAD dependent epimerase/dehydratase family [PF01370.23, score=32.2]; KR domain [PF08659.12, score=30.5]; GDP-mannose 4,6 dehydratase [PF16363.7, score=24.3]; Polysaccharide biosynthesis protein [PF02719.17, score=18.8]} {Human: ENSG00000164120, HPGD, 15-hydroxyprostaglandin dehydrogenase, [Score=121, Expect=4e-33]} {Mouse: ENSMUSG00000031613, Hpgd, hydroxyprostaglandin dehydrogenase 15 (NAD), [Score=117, Expect=6e-32]} {Dmel: FBgn0011693, Pdh, Photoreceptor dehydrogenase, [Score=90.5, Expect=1e-21]} {Celegans: WBGene00000968, dhs-4, DeHydrogenases, Short chain, [Score=69.3, Expect=6e-14]} {Smed: dd_Smed_v6_2263_0_1, dd_Smed_v6_2263_0_1, [Score=53.9, Expect=7e-09]} {RNA1509_33517} {RNA1310_34765.1} {RNA815_8749.1}
7. MligTC455_32173 219 4.57 Mlig455_031549

Neo: -

Age: -

Region-enriched R5: 2.002/0.00002

 0.98 - - - - 0.980 - Mlig455_031549 {REF} {Length: 976} {Pfam: Cupin domain [PF07883.13, score=42.6]; AraC-like ligand binding domain [PF02311.21, score=20.4]} {RNA1509_21844} {RNA1310_48404} {RNA815_27700}
8. MligTC455_51222 48 1.01 Mlig455_012238

Neo: -

Age: -

 0.971 - - 0.971 - - - Mlig455_012238 {REF} {Length: 3328} {NoTransDecoderORF} {RNA1509_38168} {RNA1310_732.1} {RNA815_27031}
9. MligTC455_43480 42 0.87 Mlig455_067607

Neo: -

Age: Down-Up-Down

 ZNF133 0.969 - - - 0.969 - - Mlig455_067607 {REF} {Length: 3599} {Pfam: Zinc-finger double domain [PF13465.8, score=41.2]; Zinc finger, C2H2 type [PF00096.28, score=39.4]; C2H2-type zinc finger [PF13894.8, score=30.8]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=23.2]} {Human: ENSG00000125846, ZNF133, zinc finger protein 133, [Score=88.6, Expect=1e-17]; ENSG00000116809, ZBTB17, zinc finger and BTB domain containing 17, [Score=88.2, Expect=3e-17]; ENSG00000164256, PRDM9, PR/SET domain 9, [Score=88.2, Expect=3e-17]; ENSG00000166529, ZSCAN21, zinc finger and SCAN domain containing 21, [Score=87.0, Expect=3e-17]; ENSG00000187801, ZFP69B, ZFP69 zinc finger protein B, [Score=86.7, Expect=4e-17]; ENSG00000067646, ZFY, zinc finger protein Y-linked, [Score=86.7, Expect=7e-17]; ENSG00000085276, MECOM, MDS1 and EVI1 complex locus, [Score=86.7, Expect=1e-16]; ENSG00000257446, ZNF878, zinc finger protein 878, [Score=86.3, Expect=6e-17]; ENSG00000167785, ZNF558, zinc finger protein 558, [Score=84.7, Expect=8e-17]} {Mouse: ENSMUSG00000078995, Zfp456, zinc finger protein 456, [Score=92.0, Expect=4e-19]; ENSMUSG00000067424, Zfp563, zinc finger protein 563, [Score=90.9, Expect=9e-19]; ENSMUSG00000006215, Zbtb17, zinc finger and BTB domain containing 17, [Score=89.0, Expect=9e-18]; ENSMUSG00000066880, Zfp617, zinc finger protein 617, [Score=88.2, Expect=1e-17]; ENSMUSG00000037017, Zscan21, zinc finger and SCAN domain containing 21, [Score=87.4, Expect=2e-17]} {Dmel: FBgn0027339, jim, [Score=80.1, Expect=4e-15]} {Celegans: WBGene00012639, fezf-1, FEZ Family zinc finger protein, [Score=68.6, Expect=8e-13]} {Smed: dd_Smed_v6_10676_0_1, dd_Smed_v6_10676_0_1, [Score=79.3, Expect=7e-16]} {RNA1509_35145} {RNA1310_654.1} {RNA815_3048.1}
10. MligTC455_09368 14 0.3 Mlig455_055483

Neo: -

Age: -

 0.967 - - - - 0.967 - Mlig455_055483 {REF} {Length: 459} {NoTransDecoderORF} {RNA1310_63892}
11. MligTC455_34563 86 1.79 Mlig455_020138

Neo: -

Age: Down-Up-Down

 VASH2 0.966 - - 0.966 - - - Mlig455_020138 {REF} {Length: 2429} {Pfam: Vasohibin [PF14822.8, score=316.4]} {Human: ENSG00000143494, VASH2, vasohibin 2, [RH, Score=253, Expect=1e-81]; ENSG00000071246, VASH1, vasohibin 1, [RH, Score=252, Expect=2e-81]} {Mouse: ENSMUSG00000021256, Vash1, vasohibin 1, [RH, Score=255, Expect=2e-82]; ENSMUSG00000037568, Vash2, vasohibin 2, [RH, Score=252, Expect=2e-81]} {Smed: dd_Smed_v6_12833_0_1, dd_Smed_v6_12833_0_1, [RH, Score=230, Expect=1e-73]} {RNA1509_59274} {RNA1310_23626.1, RNA1509_59274} {RNA1509_59274, RNA815_11698.1}
12. MligTC455_51162 19 0.4 Mlig455_031792

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_031792 {REF} {Length: 2044} {RNA1509_36146} {RNA1310_58551} {RNA815_37384}
13. MligTC455_24750 196 4.09 Mlig455_016682

Neo: Int S/G2/M

Age: Up-Down-Down

 0.962 - - - - 0.962 - Mlig455_016682 {REF} {Length: 2372} {TRANSSPLICED} {RNA1509_16225, RNA1509_50867} {RNA1310_1264.1, RNA1509_50867} {RNA1509_50867, RNA815_3978.1}
14. MligTC455_22085 22 0.46 Mlig455_015755

Neo: -

Age: -

 0.961 - - 0.961 - - - Mlig455_015755 {REF} {Length: 3621} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=157.6]; WSC domain [PF01822.21, score=25.4]; Kringle domain [PF00051.20, score=22.7]} {Celegans: WBGene00003168, mec-4, Degenerin mec-4, [Score=61.6, Expect=2e-09]} {Smed: dd_Smed_v6_17245_0_1, dd_Smed_v6_17245_0_1, [Score=64.3, Expect=3e-10]} {RNA1509_30712} {RNA1310_47107} {RNA815_27865}
15. MligTC455_05058 12 0.24 Mlig455_014379

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-1.266

 F5 0.96 - - - - - 0.960 Mlig455_014379 {REF} {Length: 1298} {Human: ENSG00000198734, F5, coagulation factor V, [Score=50.8, Expect=3e-06]} {RNA1310_79473.1} {RNA815_61333}
16. MligTC455_06418 80 1.66 Mlig455_007388

Neo: Germline

Age: Down-Up-Down

 0.959 - - - - - 0.959 Mlig455_007388 {REF} {Length: 3712} {Pfam: KH domain [PF00013.31, score=21.3]} {RNA1509_34412} {RNA1310_8069, RNA1509_34412} {RNA1509_34412, RNA815_3579}
17. MligTC455_29921 18 0.37 Mlig455_062698

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_062698 {REF} {Length: 3416} {RNA1509_12781} {RNA1310_63.1} {RNA815_23.1}
18. MligTC455_25956 22 0.46 Mlig455_023202

Neo: -

Age: -

 0.951 - 0.951 - - - - Mlig455_023202 {REF} {Length: 3676} {RNA1509_46649} {RNA1310_4837.1} {RNA815_7078}
19. MligTC455_31675 71 1.49 Mlig455_001806, Mlig455_062232

Neo: -

Age: -

 0.95 - - - - - 0.950

Mlig455_001806 {REF} {Length: 1760} {Pfam: Syntaxin 6, N-terminal [PF09177.13, score=32.9]} {RNA1509_55597} {RNA1310_30832} {RNA815_15518}

Mlig455_062232 {REF} {Length: 1371} {Pfam: Poly(ADP-ribose) polymerase catalytic domain [PF00644.22, score=58.4]} {RNA1509_55597} {RNA1310_35578} {RNA815_15518}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA