M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_37092

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_37092 161 3.35 Mlig455_048271

Neo: -

Age: -

 RNF34 Mlig455_048271 {REF} {Length: 2881} {TRANSSPLICED} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=38.8]; FYVE-type zinc finger [PF02318.18, score=19.1]; Prokaryotic RING finger family 4 [PF14447.8, score=18.8]} {Human: ENSG00000170633, RNF34, ring finger protein 34, [RH, Score=139, Expect=3e-38]; ENSG00000092871, RFFL, ring finger and FYVE like domain containing E3 ubiquitin protein ligase, [RH, Score=137, Expect=7e-36]; ENSG00000267618, RAD51L3-RFFL, RAD51L3-RFFL readthrough, [RH, Score=136, Expect=3e-36]} {Mouse: ENSMUSG00000029474, Rnf34, ring finger protein 34, [RH, Score=143, Expect=6e-38]; ENSMUSG00000020696, Rffl, ring finger and FYVE like domain containing protein, [RH, Score=142, Expect=2e-37]} {Dmel: FBgn0033783, CG17019, [RH, Score=134, Expect=3e-33]} {Celegans: WBGene00017342, F10D7.5, [RH, Score=62.8, Expect=2e-10]} {Smed: dd_Smed_v6_6206_0_1, dd_Smed_v6_6206_0_1, [Score=110, Expect=8e-27]} {RNA1509_13117, RNA1509_16106} {RNA1310_5737.1, RNA1509_13117} {RNA1509_13117, RNA815_6542}

Cumulative graph for MligTC455_37092

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.89 2.465 0.67006 1.00000
RegionR2 -0.124 2.465 0.88341 1.00000
RegionR3 0.008 2.465 0.98314 1.00000
RegionR4 1.551 2.465 0.03991 0.16523
RegionR5 0.503 2.465 0.38711 0.74268
RegionR6 -0.555 2.465 0.46241 1.00000
RegionR7 -1.122 2.465 0.27984 0.91248
RegionR8 0.629 2.465 0.49399 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.532 2.465 0.46535 1.00000
RegenerationR2 -0.459 2.465 0.50786 0.87458
RegenerationR3 0.262 2.465 0.72082 0.95461
RegenerationR4 -1.326 2.465 0.08567 0.46108
RegenerationR5 -0.492 2.465 0.46460 0.83953
RegenerationR6 0.018 2.465 0.98628 1.00000
RegenerationBL 0.55 2.465 0.54605 0.90327
RegenerationTP -0.789 2.465 0.49097 0.89630


Genes with expression patterns similar to MligTC455_37092

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_37092 161 3.35 Mlig455_048271

Neo: -

Age: -

 RNF34 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_048271 {REF} {Length: 2881} {TRANSSPLICED} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=38.8]; FYVE-type zinc finger [PF02318.18, score=19.1]; Prokaryotic RING finger family 4 [PF14447.8, score=18.8]} {Human: ENSG00000170633, RNF34, ring finger protein 34, [RH, Score=139, Expect=3e-38]; ENSG00000092871, RFFL, ring finger and FYVE like domain containing E3 ubiquitin protein ligase, [RH, Score=137, Expect=7e-36]; ENSG00000267618, RAD51L3-RFFL, RAD51L3-RFFL readthrough, [RH, Score=136, Expect=3e-36]} {Mouse: ENSMUSG00000029474, Rnf34, ring finger protein 34, [RH, Score=143, Expect=6e-38]; ENSMUSG00000020696, Rffl, ring finger and FYVE like domain containing protein, [RH, Score=142, Expect=2e-37]} {Dmel: FBgn0033783, CG17019, [RH, Score=134, Expect=3e-33]} {Celegans: WBGene00017342, F10D7.5, [RH, Score=62.8, Expect=2e-10]} {Smed: dd_Smed_v6_6206_0_1, dd_Smed_v6_6206_0_1, [Score=110, Expect=8e-27]} {RNA1509_13117, RNA1509_16106} {RNA1310_5737.1, RNA1509_13117} {RNA1509_13117, RNA815_6542}
2. MligTC455_13257 735 15.31 Mlig455_068403

Neo: -

Age: -

 1.854 - - 0.966 0.888 - - Mlig455_068403 {REF} {Length: 773} {NoTransDecoderORF} {RNA1509_44309} {RNA1310_44898.1} {RNA815_21952.1}
3. MligTC455_42677 249 5.18 Mlig455_020476

Neo: -

Age: -

 1.826 0.874 - 0.952 - - - Mlig455_020476 {REF} {Length: 1858} {TRANSSPLICED} {RNA1509_34250} {RNA1310_13323} {RNA815_20547}
4. MligTC455_23370 144 3.01 Mlig455_065633

Neo: -

Age: Down-Up-Up

 1.774 0.813 - 0.961 - - - Mlig455_065633 {REF} {Length: 1422} {RNA1509_56375} {RNA1310_29166.1, RNA1509_56375} {RNA1509_56375, RNA815_11123}
5. MligTC455_22166 449 9.36 Mlig455_011180, Mlig455_011209

Neo: -

Age: logFC(26M/2M)=-0.276

 TRPA1 1.749 - - 0.964 0.785 - -

Mlig455_011180 {REF} {Length: 6424} {Pfam: Ion transport protein [PF00520.33, score=49.9]} {Human: ENSG00000104321, TRPA1, transient receptor potential cation channel subfamily A member 1, [Score=84.0, Expect=1e-15]} {Mouse: ENSMUSG00000032769, Trpa1, transient receptor potential cation channel, subfamily A, member 1, [Score=84.3, Expect=1e-15]} {Dmel: FBgn0035934, TrpA1, Transient receptor potential cation channel A1, [Score=99.8, Expect=1e-20]} {Celegans: WBGene00007801, trpa-1, Transient receptor potential cation channel subfamily A member 1 homolog, [Score=112, Expect=2e-24]} {Smed: dd_Smed_v6_12031_0_1, dd_Smed_v6_12031_0_1, [Score=59.7, Expect=4e-09]} {RNA1509_5546} {RNA1310_658, RNA1509_5546} {RNA1509_5546, RNA815_314.1}

Mlig455_011209 {REF} {Length: 4870} {RNA1509_5546} {RNA1310_658} {RNA815_314.1}
6. MligTC455_42231 324 6.74 Mlig455_012002

Neo: -

Age: logFC(26M/2M)=0.345

 0.974 - - 0.974 - - - Mlig455_012002 {REF} {Length: 1795} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF1294) [PF06961.15, score=65.9]} {RNA1509_25091} {RNA1310_14788, RNA1509_25091} {RNA1509_25091, RNA815_13934}
7. MligTC455_25582 465 9.69 Mlig455_009721

Neo: -

Age: Up-Down-Down

Region-enriched R2: 1.797/0.02183

 CHRNA3 0.969 - - 0.969 - - - Mlig455_009721 {REF} {Length: 2022} {TRANSSPLICED} {Pfam: Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=280.9]; Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=264.3]} {Human: ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [RH, Score=455, Expect=3e-155]; ENSG00000117971, CHRNB4, cholinergic receptor nicotinic beta 4 subunit, [RH, Score=452, Expect=3e-154]; ENSG00000120903, CHRNA2, cholinergic receptor nicotinic alpha 2 subunit, [RH, Score=450, Expect=3e-153]; ENSG00000147434, CHRNA6, cholinergic receptor nicotinic alpha 6 subunit, [RH, Score=445, Expect=2e-151]; ENSG00000101204, CHRNA4, cholinergic receptor nicotinic alpha 4 subunit, [RH, Score=443, Expect=6e-149]} {Mouse: ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [RH, Score=456, Expect=8e-156]; ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [RH, Score=446, Expect=6e-152]; ENSMUSG00000035200, Chrnb4, cholinergic receptor, nicotinic, beta polypeptide 4, [RH, Score=439, Expect=2e-149]} {Dmel: FBgn0000036, nAChRalpha1, nicotinic Acetylcholine Receptor alpha1, [RH, Score=600, Expect=0.0]} {Celegans: WBGene00006797, unc-63, Acetylcholine receptor subunit alpha-type unc-63, [RH, Score=506, Expect=1e-175]} {Smed: dd_Smed_v6_14630_0_1, dd_Smed_v6_14630_0_1, [Score=468, Expect=7e-160]} {RNA1509_19239} {RNA1310_7228, RNA1509_19239} {RNA1509_19239, RNA815_134.1}
8. MligTC455_52109 297 6.19 Mlig455_069072

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.347

 0.964 - - 0.964 - - - Mlig455_069072 {REF} {Length: 2302} {RNA1509_46495} {RNA1310_32026} {RNA815_11216.2}
9. MligTC455_36317 545 11.35 Mlig455_025049

Neo: -

Age: -

 GLB1 0.957 - - 0.957 - - - Mlig455_025049 {REF} {Length: 2498} {Pfam: Glycosyl hydrolases family 35 [PF01301.21, score=364.2]; Beta-galactosidase [PF02449.17, score=40.5]; Beta-galactosidase jelly roll domain [PF13364.8, score=31.4]} {Human: ENSG00000170266, GLB1, galactosidase beta 1, [RH, Score=482, Expect=1e-161]} {Mouse: ENSMUSG00000045594, Glb1, galactosidase, beta 1, [RH, Score=491, Expect=1e-165]} {Dmel: FBgn0001089, Gal, beta galactosidase, [RH, Score=412, Expect=7e-135]} {Celegans: WBGene00011832, bgal-1, Beta-galactosidase, [RH, Score=384, Expect=1e-124]} {Smed: dd_Smed_v6_4056_0_1, dd_Smed_v6_4056_0_1, [RH, Score=514, Expect=4e-175]} {RNA1509_37267} {RNA1310_9080.2, RNA1509_37267} {RNA1509_37267, RNA815_6506}
10. MligTC455_44872 930 19.38 Mlig455_051844, Mlig455_053167

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.391

 HINT1 0.955 - - 0.955 - - -

Mlig455_051844 {REF} {Length: 2313} {TRANSSPLICED} {Pfam: HIT domain [PF01230.25, score=85.4]; Scavenger mRNA decapping enzyme C-term binding [PF11969.10, score=42.2]} {Human: ENSG00000169567, HINT1, histidine triad nucleotide binding protein 1, [Score=87.0, Expect=8e-20]; ENSG00000137133, HINT2, histidine triad nucleotide binding protein 2, [Score=82.8, Expect=6e-18]} {Mouse: ENSMUSG00000020267, Hint1, histidine triad nucleotide binding protein 1, [Score=86.3, Expect=1e-19]} {Dmel: FBgn0031459, CG2862, [Score=82.4, Expect=2e-18]} {Celegans: WBGene00009002, hint-1, Histidine triad nucleotide-binding protein 1, [Score=94.4, Expect=7e-23]} {Smed: dd_Smed_v6_3078_0_1, dd_Smed_v6_3078_0_1, [Score=121, Expect=2e-32]} {RNA1509_16920} {RNA1310_17399} {RNA815_6365.1}

Mlig455_053167 {REF} {Length: 1959} {TRANSSPLICED} {Pfam: HIT domain [PF01230.25, score=85.4]; Scavenger mRNA decapping enzyme C-term binding [PF11969.10, score=42.2]} {Human: ENSG00000169567, HINT1, histidine triad nucleotide binding protein 1, [Score=87.0, Expect=8e-20]; ENSG00000137133, HINT2, histidine triad nucleotide binding protein 2, [Score=82.8, Expect=6e-18]} {Mouse: ENSMUSG00000020267, Hint1, histidine triad nucleotide binding protein 1, [Score=86.3, Expect=1e-19]} {Dmel: FBgn0031459, CG2862, [Score=82.4, Expect=2e-18]} {Celegans: WBGene00009002, hint-1, Histidine triad nucleotide-binding protein 1, [Score=94.4, Expect=7e-23]} {Smed: dd_Smed_v6_3078_0_1, dd_Smed_v6_3078_0_1, [Score=121, Expect=2e-32]} {RNA1509_16920} {RNA1310_17399} {RNA815_6365.1}
11. MligTC455_46113 3039 63.32 Mlig455_018658, Mlig455_018860

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.389

 VIL1 0.954 - - 0.954 - - -

Mlig455_018658 {REF} {Length: 1291} {TRANSSPLICED} {Pfam: Gelsolin repeat [PF00626.24, score=109.5]} {Human: ENSG00000127831, VIL1, villin 1, [Score=198, Expect=2e-59]} {Mouse: ENSMUSG00000026879, Gsn, gelsolin, [Score=188, Expect=2e-53]; ENSMUSG00000026175, Vil1, villin 1, [Score=187, Expect=5e-53]; ENSMUSG00000025432, Avil, advillin, [Score=186, Expect=2e-52]} {Dmel: FBgn0010225, Gel, Gelsolin, [Score=202, Expect=2e-58]} {Celegans: WBGene00010593, gsnl-1, Gelsolin-like protein 1, [Score=173, Expect=8e-50]} {Smed: dd_Smed_v6_1673_0_1, dd_Smed_v6_1673_0_1, [Score=393, Expect=7e-137]} {RNA1509_33516} {RNA1310_26082} {RNA815_10740.1}

Mlig455_018860 {REF} {Length: 2624} {Pfam: Gelsolin repeat [PF00626.24, score=107.7]} {Human: ENSG00000127831, VIL1, villin 1, [Score=197, Expect=1e-58]} {Mouse: ENSMUSG00000026879, Gsn, gelsolin, [Score=187, Expect=1e-52]; ENSMUSG00000026175, Vil1, villin 1, [Score=186, Expect=3e-52]; ENSMUSG00000025432, Avil, advillin, [Score=185, Expect=6e-52]} {Dmel: FBgn0010225, Gel, Gelsolin, [Score=200, Expect=1e-57]} {Celegans: WBGene00010593, gsnl-1, Gelsolin-like protein 1, [Score=173, Expect=2e-49]} {Smed: dd_Smed_v6_1673_0_1, dd_Smed_v6_1673_0_1, [RH, Score=429, Expect=2e-150]} {RNA1509_15698, RNA1509_33516, RNA1509_34177, RNA1509_48299} {RNA1310_17428.1, RNA1509_15698, RNA1509_33516, RNA1509_34177, RNA1509_48299} {RNA1509_15698, RNA1509_33516, RNA1509_34177, RNA1509_48299, RNA815_10740.1}
12. MligTC455_23270 247 5.16 Mlig455_037672

Neo: -

Age: -

 SLC13A3 0.952 - - 0.952 - - - Mlig455_037672 {REF} {Length: 4438} {Pfam: Sodium:sulfate symporter transmembrane region [PF00939.21, score=253.7]; Citrate transporter [PF03600.18, score=92.7]; 4'-phosphopantetheinyl transferase superfamily [PF01648.22, score=55.0]} {Human: ENSG00000158296, SLC13A3, solute carrier family 13 member 3, [Score=295, Expect=2e-89]; ENSG00000007216, SLC13A2, solute carrier family 13 member 2, [Score=281, Expect=1e-83]} {Mouse: ENSMUSG00000018459, Slc13a3, solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3, [Score=298, Expect=4e-90]; ENSMUSG00000001095, Slc13a2, solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, [Score=296, Expect=2e-89]} {Dmel: FBgn0036816, Indy, I'm not dead yet, [Score=174, Expect=5e-46]} {Celegans: WBGene00007138, B0285.6, Uncharacterized transporter B0285.6, [Score=187, Expect=2e-50]} {Smed: dd_Smed_v6_5476_0_1, dd_Smed_v6_5476_0_1, [Score=284, Expect=1e-85]} {RNA1509_1723, RNA1509_30648, RNA1509_54785} {RNA1310_5497, RNA1509_30648, RNA1509_54785} {RNA1509_30648, RNA1509_54785, RNA815_1709}
13. MligTC455_44769 453 9.44 Mlig455_038030

Neo: -

Age: Down-Up-Up

 0.952 - - 0.952 - - - Mlig455_038030 {REF} {Length: 1156} {RNA1509_60104} {RNA1310_22354.2, RNA1509_60104} {RNA1509_60104, RNA815_11741.1}
14. MligTC455_20046 292 6.08 Mlig455_028903

Neo: -

Age: -

 WDR89 0.951 - - 0.951 - - - Mlig455_028903 {REF} {Length: 1762} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=20.3]} {Human: ENSG00000140006, WDR89, WD repeat domain 89, [RH, Score=108, Expect=1e-25]} {Mouse: ENSMUSG00000045690, Wdr89, WD repeat domain 89, [RH, Score=110, Expect=1e-26]} {Dmel: FBgn0033471, CG12134, [RH, Score=76.3, Expect=8e-15]} {Smed: dd_Smed_v6_13963_0_1, dd_Smed_v6_13963_0_1, [RH, Score=65.5, Expect=8e-12]} {RNA1509_41108, RNA1509_53990} {RNA1310_19275, RNA1509_41108, RNA1509_53990} {RNA1509_41108, RNA1509_53990, RNA815_7400}
15. MligTC455_26581 71 1.48 Mlig455_013862

Neo: -

Age: -

 ALKBH3 0.951 - - 0.951 - - - Mlig455_013862 {REF} {Length: 4239} {TRANSSPLICED} {Pfam: WSC domain [PF01822.21, score=158.2]; 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=89.5]} {Human: ENSG00000166199, ALKBH3, alkB homolog 3, alpha-ketoglutaratedependent dioxygenase, [Score=117, Expect=2e-28]} {Mouse: ENSMUSG00000040174, Alkbh3, alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase, [Score=115, Expect=6e-28]} {Celegans: WBGene00005024, sqv-6, Xylosyltransferase sqv-6, [Score=51.2, Expect=5e-06]} {Smed: dd_Smed_v6_7441_0_1, dd_Smed_v6_7441_0_1, [Score=105, Expect=2e-24]} {RNA1509_29984} {RNA1310_8204} {RNA815_38513}
16. MligTC455_35284 125 2.6 Mlig455_066664

Neo: -

Age: -

 0.951 - - 0.951 - - - Mlig455_066664 {REF} {Length: 1601} {NoTransDecoderORF}
17. MligTC455_39183 136 2.84 Mlig455_045539

Neo: -

Age: -

 0.951 - - - 0.951 - - Mlig455_045539 {REF} {Length: 5635} {Pfam: Poxvirus A32 protein [PF04665.14, score=27.0]} {Celegans: WBGene00021498, Y40C7B.1, [Score=51.6, Expect=2e-07]} {RNA1509_5514} {RNA1310_683.1} {RNA815_1542.1}
18. MligTC455_17960 44 0.92 Mlig455_021047

Neo: -

Age: -

Region-enriched R2: 4.515/0.04131
Region-enriched R4: 3.266/0.03072

 0.95 - - - 0.950 - - Mlig455_021047 {REF} {Length: 2114} {Pfam: SH3 domain [PF17902.3, score=25.9]; Plectin repeat [PF00681.22, score=23.8]} {Smed: dd_Smed_v6_16329_0_1, dd_Smed_v6_16329_0_1, [Score=56.6, Expect=2e-08]} {RNA1509_53557} {RNA1310_11354} {RNA815_18566}
19. MligTC455_21874 283 5.89 Mlig455_050795

Neo: -

Age: -

 CPNE8 0.95 - - - 0.950 - - Mlig455_050795 {REF} {Length: 3835} {TRANSSPLICED} {Pfam: Copine [PF07002.18, score=264.5]; C2 domain [PF00168.32, score=72.7]; vWA found in TerF C terminus [PF10138.11, score=35.0]} {Human: ENSG00000139117, CPNE8, copine 8, [RH, Score=480, Expect=6e-164]; ENSG00000124772, CPNE5, copine 5, [RH, Score=459, Expect=3e-155]} {Mouse: ENSMUSG00000052560, Cpne8, copine VIII, [RH, Score=481, Expect=2e-164]; ENSMUSG00000024008, Cpne5, copine V, [RH, Score=462, Expect=8e-157]; ENSMUSG00000030270, Cpne9, copine family member IX, [RH, Score=458, Expect=2e-155]} {Celegans: WBGene00001577, gem-4, Gon-2 Extragenic Modifier, [Score=355, Expect=5e-115]} {Smed: dd_Smed_v6_2149_0_4, dd_Smed_v6_2149_0_4, [Score=517, Expect=2e-178]} {RNA1509_10831, RNA1509_41274} {RNA1310_13946.1, RNA1509_10831, RNA1509_41274} {RNA1509_10831, RNA1509_41274, RNA815_5440}
20. MligTC455_28578 696 14.49 Mlig455_006979

Neo: -

Age: -

 REL 0.95 - - 0.950 - - - Mlig455_006979 {REF} {Length: 3712} {Pfam: Rel homology DNA-binding domain [PF00554.24, score=107.5]} {Human: ENSG00000162924, REL, REL proto-oncogene, NF-kB subunit, [Score=54.7, Expect=5e-07]} {Mouse: ENSMUSG00000024927, Rela, v-rel reticuloendotheliosis viral oncogene homolog A (avian), [Score=55.8, Expect=1e-07]} {RNA1509_2844} {RNA1310_9566} {RNA815_4513}
21. MligTC455_28579 550 11.46 Mlig455_006981

Neo: -

Age: -

 0.95 - - 0.950 - - - Mlig455_006981 {REF} {Length: 627} {NoTransDecoderORF} {RNA1509_39125} {RNA1310_18136} {RNA815_4513}
22. MligTC455_34455 38 0.78 Mlig455_052324

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.722

 0.95 - - - 0.950 - - Mlig455_052324 {REF} {Length: 1790} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=22.4]; RING-type zinc-finger [PF13445.8, score=22.2]; zinc finger of C3HC4-type, RING [PF15227.8, score=21.1]} {RNA1509_37797} {RNA1310_14955.2} {RNA815_10713}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA