M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_39183

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_39183 136 2.84 Mlig455_045539

Neo: -

Age: -

 Mlig455_045539 {REF} {Length: 5635} {Pfam: Poxvirus A32 protein [PF04665.14, score=27.0]} {Celegans: WBGene00021498, Y40C7B.1, [Score=51.6, Expect=2e-07]} {RNA1509_5514} {RNA1310_683.1} {RNA815_1542.1}

Cumulative graph for MligTC455_39183

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.678 2.195 1.00000 1.00000
RegionR2 0.833 2.195 0.51485 0.89130
RegionR3 0.263 2.195 0.67918 1.00000
RegionR4 2.381 2.195 0.25232 0.55225
RegionR5 0.913 2.195 0.50275 0.86606
RegionR6 0.169 2.195 0.66198 1.00000
RegionR7 -2.157 2.195 0.99967 1.00000
RegionR8 -0.723 2.195 0.99962 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.707 2.195 0.84044 1.00000
RegenerationR2 2.014 2.195 0.02578 0.26495
RegenerationR3 1.471 2.195 0.27211 0.70625
RegenerationR4 1.796 2.195 0.12510 0.53813
RegenerationR5 1.955 2.195 0.10952 0.50008
RegenerationR6 2.778 2.195 0.05034 0.28063
RegenerationBL 4.965 2.195 0.00351 0.05188
RegenerationTP 3.882 2.195 0.14098 0.55987


Genes with expression patterns similar to MligTC455_39183

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_39183 136 2.84 Mlig455_045539

Neo: -

Age: -

 4 - - 1.000 1.000 1.000 1.000 Mlig455_045539 {REF} {Length: 5635} {Pfam: Poxvirus A32 protein [PF04665.14, score=27.0]} {Celegans: WBGene00021498, Y40C7B.1, [Score=51.6, Expect=2e-07]} {RNA1509_5514} {RNA1310_683.1} {RNA815_1542.1}
2. MligTC455_52586 230 4.78 Mlig455_069158

Neo: -

Age: -

 1.852 - - - - 0.899 0.953 Mlig455_069158 {REF} {Length: 3154} {RNA1509_45748, RNA1509_55217} {RNA1310_4688.1, RNA1509_45748} {RNA1509_45748, RNA815_38425}
3. MligTC455_39411 356 7.42 Mlig455_040242

Neo: -

Age: -

 1.786 - - - 0.830 0.956 - Mlig455_040242 {REF} {Length: 4870} {Pfam: Adenylate and Guanylate cyclase catalytic domain [PF00211.22, score=34.9]} {Dmel: FBgn0003301, rut, rutabaga, [Score=140, Expect=4e-33]} {RNA1509_13561} {RNA1310_8616.1} {RNA815_35339}
4. MligTC455_05098 127 2.65 Mlig455_009525, Mlig455_009531

Neo: -

Age: Up-Down-Down

Region-enriched R4: 4.095/0.01821

 KCNH7 1.764 - - - - 0.808 0.956

Mlig455_009525 {REF} {Length: 2109} {Pfam: Ion transport protein [PF00520.33, score=111.8]; Ion channel [PF07885.18, score=46.1]; Cyclic nucleotide-binding domain [PF00027.31, score=36.3]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=29.8]} {Human: ENSG00000184611, KCNH7, potassium voltage-gated channel subfamily H member 7, [Score=528, Expect=4e-176]; ENSG00000173826, KCNH6, potassium voltage-gated channel subfamily H member 6, [Score=509, Expect=2e-170]; ENSG00000055118, KCNH2, potassium voltage-gated channel subfamily H member 2, [Score=505, Expect=9e-167]} {Mouse: ENSMUSG00000059742, Kcnh7, potassium voltage-gated channel, subfamily H (eag-related), member 7, [Score=527, Expect=4e-175]; ENSMUSG00000001901, Kcnh6, potassium voltage-gated channel, subfamily H (eag-related), member 6, [Score=510, Expect=3e-171]; ENSMUSG00000038319, Kcnh2, potassium voltage-gated channel, subfamily H (eag-related), member 2, [Score=504, Expect=9e-167]} {Dmel: FBgn0003353, sei, seizure, [Score=507, Expect=2e-171]} {Celegans: WBGene00006830, unc-103, Potassium voltage-gated channel unc-103, [Score=496, Expect=1e-169]} {Smed: dd_Smed_v6_12978_0_1, dd_Smed_v6_12978_0_1, [Score=608, Expect=0.0]} {RNA1509_56964} {RNA1310_41939} {RNA815_5858.1}

Mlig455_009531 {REF} {Length: 3631} {Pfam: Ion transport protein [PF00520.33, score=110.4]; Ion channel [PF07885.18, score=45.2]; Cyclic nucleotide-binding domain [PF00027.31, score=43.3]} {Human: ENSG00000184611, KCNH7, potassium voltage-gated channel subfamily H member 7, [Score=619, Expect=0.0]; ENSG00000173826, KCNH6, potassium voltage-gated channel subfamily H member 6, [Score=597, Expect=0.0]; ENSG00000055118, KCNH2, potassium voltage-gated channel subfamily H member 2, [Score=596, Expect=0.0]} {Mouse: ENSMUSG00000059742, Kcnh7, potassium voltage-gated channel, subfamily H (eag-related), member 7, [Score=617, Expect=0.0]; ENSMUSG00000001901, Kcnh6, potassium voltage-gated channel, subfamily H (eag-related), member 6, [Score=602, Expect=0.0]; ENSMUSG00000038319, Kcnh2, potassium voltage-gated channel, subfamily H (eag-related), member 2, [Score=596, Expect=0.0]} {Dmel: FBgn0003353, sei, seizure, [Score=591, Expect=0.0]} {Celegans: WBGene00006830, unc-103, Potassium voltage-gated channel unc-103, [Score=579, Expect=0.0]} {Smed: dd_Smed_v6_12978_0_4, dd_Smed_v6_12978_0_4, [RH, Score=716, Expect=0.0]} {RNA1509_56964} {RNA1310_23186, RNA1509_56964} {RNA1509_56964, RNA815_5858.2}
5. MligTC455_51275 335 6.98 Mlig455_045339

Neo: -

Age: logFC(26M/2M)=-0.374

 GRM3 1.707 - - - - 0.754 0.953 Mlig455_045339 {REF} {Length: 4374} {Pfam: Receptor family ligand binding region [PF01094.30, score=112.7]} {Human: ENSG00000198822, GRM3, glutamate metabotropic receptor 3, [Score=78.2, Expect=7e-14]; ENSG00000164082, GRM2, glutamate metabotropic receptor 2, [Score=76.6, Expect=2e-13]} {Mouse: ENSMUSG00000003974, Grm3, glutamate receptor, metabotropic 3, [Score=75.5, Expect=3e-13]; ENSMUSG00000023192, Grm2, glutamate receptor, metabotropic 2, [Score=73.6, Expect=1e-12]} {Dmel: FBgn0050361, mtt, mangetout, [Score=84.0, Expect=6e-16]} {Celegans: WBGene00021152, mgl-3, Metabotropic GLutamate receptor family, [Score=59.3, Expect=2e-08]} {Smed: dd_Smed_v6_15419_0_1, dd_Smed_v6_15419_0_1, [Score=62.0, Expect=2e-09]} {RNA1509_29529} {RNA1310_2368.1, RNA1509_29529} {RNA1509_29529, RNA815_7926}
6. MligTC455_17138 283 5.89 Mlig455_029728

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.646

Region-specific R2: 4.824

Region-enriched R2: 5.583/0.00000

 LRRCC1 1.704 - - - - 0.732 0.972 Mlig455_029728 {REF} {Length: 1372} {Pfam: Heat shock factor binding protein 1 [PF06825.14, score=68.1]; Leucine Rich repeats (2 copies) [PF12799.9, score=67.8]; Leucine rich repeat [PF13855.8, score=44.9]; Leucine-rich repeat [PF14580.8, score=35.0]; Leucine Rich repeat [PF13516.8, score=21.5]} {Human: ENSG00000133739, LRRCC1, leucine rich repeat and coiled-coil centrosomal protein 1, [RH, Score=402, Expect=3e-122]} {Mouse: ENSMUSG00000027550, Lrrcc1, leucine rich repeat and coiled-coil domain containing 1, [RH, Score=387, Expect=3e-117]} {Dmel: FBgn0032429, CG5446, [Score=66.6, Expect=3e-13]} {Celegans: WBGene00189952, K10D2.8, [Score=65.1, Expect=8e-11]} {Smed: dd_Smed_v6_10086_0_1, dd_Smed_v6_10086_0_1, [RH, Score=443, Expect=2e-139]} {RNA1509_31405, RNA1509_32465} {RNA1310_70756, RNA1509_31405, RNA1509_32465} {RNA1509_31405, RNA1509_32465, RNA815_37567}
7. MligTC455_32446 142 2.95 Mlig455_042069

Neo: -

Age: Up-Down-Down

 TRPA1 1.701 - - - - 0.751 0.950 Mlig455_042069 {REF} {Length: 6835} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=191.2]; Ankyrin repeats (many copies) [PF13637.8, score=164.6]; Ankyrin repeats (many copies) [PF13857.8, score=152.4]; Ankyrin repeat [PF13606.8, score=136.2]; Ankyrin repeat [PF00023.32, score=129.7]; Ion transport protein [PF00520.33, score=47.4]} {Human: ENSG00000104321, TRPA1, transient receptor potential cation channel subfamily A member 1, [Score=176, Expect=1e-44]} {Mouse: ENSMUSG00000032769, Trpa1, transient receptor potential cation channel, subfamily A, member 1, [Score=286, Expect=4e-81]} {Dmel: FBgn0035934, TrpA1, Transient receptor potential cation channel A1, [Score=173, Expect=6e-44]} {Celegans: WBGene00007801, trpa-1, Transient receptor potential cation channel subfamily A member 1 homolog, [Score=450, Expect=2e-140]} {Smed: dd_Smed_v6_6201_0_1, dd_Smed_v6_6201_0_1, [Score=627, Expect=0.0]} {RNA1509_32186} {RNA1310_1780} {RNA815_450.1}
8. MligTC455_19266 1038 21.61 Mlig455_004528, Mlig455_028530

Neo: -

Age: -

Region-specific R2: 2.706

Region-enriched R2: 1.766/0.00005

 NCALD 1.699 - - - - 0.746 0.953

Mlig455_004528 {REF} {Length: 3958} {tRNA: Val(CAC),pseudo, score=38.6} {Pfam: EF-hand domain pair [PF13499.8, score=74.4]; EF hand [PF00036.34, score=71.3]; EF-hand domain [PF13405.8, score=66.3]; EF hand [PF13202.8, score=62.7]; EF-hand domain pair [PF13833.8, score=50.8]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=22.1]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=19.3]} {Human: ENSG00000104490, NCALD, neurocalcin delta, [Score=194, Expect=4e-63]; ENSG00000115756, HPCAL1, hippocalcin like 1, [Score=191, Expect=1e-61]; ENSG00000121905, HPCA, hippocalcin, [Score=185, Expect=1e-59]} {Mouse: ENSMUSG00000051359, Ncald, neurocalcin delta, [Score=194, Expect=2e-63]; ENSMUSG00000071379, Hpcal1, hippocalcin-like 1, [Score=191, Expect=8e-62]; ENSMUSG00000028785, Hpca, hippocalcin, [Score=185, Expect=1e-59]} {Dmel: FBgn0036926, CG7646, [RH, Score=221, Expect=6e-74]} {Celegans: WBGene00003564, ncs-2, Neuronal calcium sensor 2, [Score=238, Expect=6e-81]} {Smed: dd_Smed_v6_5266_0_1, dd_Smed_v6_5266_0_1, [RH, Score=359, Expect=8e-129]} {RNA1509_14564} {RNA1310_18405, RNA1509_14564} {RNA1509_14564, RNA815_10180.1}

Mlig455_028530 {REF} {Length: 3453} {tRNA: Val(CAC),pseudo, score=38.6} {Pfam: EF-hand domain pair [PF13499.8, score=74.4]; EF hand [PF00036.34, score=71.3]; EF-hand domain [PF13405.8, score=66.3]; EF hand [PF13202.8, score=62.7]; EF-hand domain pair [PF13833.8, score=50.8]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=22.1]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=19.3]} {Human: ENSG00000104490, NCALD, neurocalcin delta, [Score=194, Expect=4e-63]; ENSG00000115756, HPCAL1, hippocalcin like 1, [Score=191, Expect=1e-61]; ENSG00000121905, HPCA, hippocalcin, [Score=185, Expect=1e-59]} {Mouse: ENSMUSG00000051359, Ncald, neurocalcin delta, [Score=194, Expect=2e-63]; ENSMUSG00000071379, Hpcal1, hippocalcin-like 1, [Score=191, Expect=8e-62]; ENSMUSG00000028785, Hpca, hippocalcin, [Score=185, Expect=1e-59]} {Dmel: FBgn0036926, CG7646, [RH, Score=221, Expect=6e-74]} {Celegans: WBGene00003564, ncs-2, Neuronal calcium sensor 2, [Score=238, Expect=6e-81]} {Smed: dd_Smed_v6_5266_0_1, dd_Smed_v6_5266_0_1, [RH, Score=359, Expect=8e-129]} {RNA1509_13995, RNA1509_14564, RNA1509_30926} {RNA1310_18405, RNA1509_13995, RNA1509_30926} {RNA1509_13995, RNA1509_30926, RNA815_10180.1}
9. MligTC455_25313 529 11.03 Mlig455_047806, Mlig455_047883

Neo: -

Age: Up-Down-Down

 PCLO 1.672 - - - - 0.711 0.961

Mlig455_047806 {REF} {Length: 4640} {Pfam: C2 domain [PF00168.32, score=102.8]; PDZ domain [PF17820.3, score=23.7]} {Human: ENSG00000186472, PCLO, piccolo presynaptic cytomatrix protein, [Score=115, Expect=2e-25]} {Mouse: ENSMUSG00000061601, Pclo, piccolo (presynaptic cytomatrix protein), [RH, Score=117, Expect=4e-26]} {Dmel: FBgn0003091, Pkc53E, Protein C kinase 53E, [Score=83.2, Expect=4e-16]} {Celegans: WBGene00004033, pkc-2, Protein kinase C-like 2, [Score=79.0, Expect=7e-15]} {Smed: dd_Smed_v6_9615_0_2, dd_Smed_v6_9615_0_2, [RH, Score=198, Expect=2e-52]} {RNA1509_12877} {RNA1310_21392} {RNA815_8186}

Mlig455_047883 {REF} {Length: 3110} {Smed: dd_Smed_v6_9615_0_2, dd_Smed_v6_9615_0_2, [RH, Score=192, Expect=2e-55]} {RNA1509_12877} {RNA1310_21392} {RNA815_8186}
10. MligTC455_44020 185 3.86 Mlig455_010276

Neo: -

Age: Down-Up-Down

Region-enriched R2: 3.370/0.00096

 0.984 - - - - - 0.984 Mlig455_010276 {REF} {Length: 864} {Pfam: Heat shock factor binding protein 1 [PF06825.14, score=31.1]; Baculovirus polyhedron envelope protein, PEP, C terminus [PF04513.14, score=19.8]; Uncharacterised protein family (UPF0184) [PF03670.15, score=19.0]} {RNA1310_71172} {RNA815_36466}
11. MligTC455_18920 299 6.22 Mlig455_052039

Neo: -

Age: Down-Up-Down

Region-enriched R8: 3.175/0.01587

 RTN4R 0.981 - - - - - 0.981 Mlig455_052039 {REF} {Length: 1911} {Pfam: Leucine rich repeat [PF13855.8, score=113.0]; Leucine Rich repeats (2 copies) [PF12799.9, score=46.5]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=24.5]} {Human: ENSG00000040608, RTN4R, reticulon 4 receptor, [Score=73.2, Expect=2e-13]} {Mouse: ENSMUSG00000111113, Rtn4r, reticulon 4 receptor, [Score=72.8, Expect=2e-13]; ENSMUSG00000043811, Rtn4r, reticulon 4 receptor, [Score=72.8, Expect=2e-13]} {Dmel: FBgn0004364, 18w, 18 wheeler, [Score=71.2, Expect=7e-13]} {Celegans: WBGene00001443, fli-1, Protein flightless-1 homolog, [Score=56.6, Expect=2e-08]} {Smed: dd_Smed_v6_12111_0_1, dd_Smed_v6_12111_0_1, [Score=48.1, Expect=8e-06]} {RNA1310_19257.1} {RNA815_9099}
12. MligTC455_06333 34 0.7 Mlig455_017581

Neo: -

Age: -

 0.97 - - - - - 0.970 Mlig455_017581 {REF} {Length: 423} {NoTransDecoderORF}
13. MligTC455_31844 80 1.67 Mlig455_053982, Mlig455_054057

Neo: Int S/G2/M

Age: Down-Up-Down

 0.965 - - - 0.965 - -

Mlig455_053982 {REF} {Length: 5286} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=36.1]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=23.2]} {RNA1509_19124} {RNA1310_1002.1} {RNA815_889}

Mlig455_054057 {REF} {Length: 4109} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=31.2]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=19.2]} {RNA1509_19124} {RNA1310_1437} {RNA815_889}
14. MligTC455_37691 84 1.76 Mlig455_050364

Neo: -

Age: -

 0.965 - - - - - 0.965 Mlig455_050364 {REF} {Length: 832} {NoTransDecoderORF} {RNA1509_44223} {RNA1310_54802} {RNA815_64986}
15. MligTC455_23464 821 17.1 Mlig455_008724, Mlig455_063594

Neo: -

Age: -

Region-enriched R4: 2.089/0.01541
Region-enriched R5: 2.017/0.00237

 0.963 - - - - 0.963 -

Mlig455_008724 {REF} {Length: 2468} {RNA1509_45227, RNA1509_47251} {RNA1310_23310, RNA1509_45227} {RNA1509_45227, RNA815_27807}

Mlig455_063594 {REF} {Length: 2461} {RNA1509_47251} {RNA1310_23310, RNA1509_47251} {RNA1509_47251, RNA815_27807}
16. MligTC455_13029 37 0.78 Mlig455_008633

Neo: -

Age: -

 0.962 - - - 0.962 - - Mlig455_008633 {REF} {Length: 1091} {Celegans: WBGene00007723, C25F9.2, [Score=89.7, Expect=2e-20]} {RNA1310_7131} {RNA815_8935}
17. MligTC455_18384 52 1.08 Mlig455_033464, Mlig455_033480

Neo: -

Age: -

 CHRNB3 0.962 - - - - - 0.962

Mlig455_033464 {REF} {Length: 3273} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=101.9]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=28.0]} {Human: ENSG00000147432, CHRNB3, cholinergic receptor nicotinic beta 3 subunit, [Score=112, Expect=2e-26]} {Mouse: ENSMUSG00000031492, Chrnb3, cholinergic receptor, nicotinic, beta polypeptide 3, [Score=107, Expect=4e-25]; ENSMUSG00000035594, Chrna5, cholinergic receptor, nicotinic, alpha polypeptide 5, [Score=102, Expect=2e-23]} {Dmel: FBgn0000039, nAChRalpha2, nicotinic Acetylcholine Receptor alpha2, [Score=95.5, Expect=5e-21]} {Celegans: WBGene00000058, acr-19, AcetylCholine Receptor; Acetylcholine receptor (63.2 kD) (Acr-19), [Score=98.2, Expect=5e-22]} {Smed: dd_Smed_v6_10322_0_1, dd_Smed_v6_10322_0_1, [Score=90.5, Expect=1e-19]} {RNA1509_28510} {RNA1310_44183.1} {RNA815_32188}

Mlig455_033480 {REF} {Length: 904} {RNA1310_131495}
18. MligTC455_53544 626 13.04 Mlig455_025841

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.481

 HEYL 0.962 - - - - - 0.962 Mlig455_025841 {REF} {Length: 2716} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=42.7]} {Human: ENSG00000163909, HEYL, hes related family bHLH transcription factor with YRPW motif-like, [Score=57.4, Expect=3e-08]; ENSG00000135547, HEY2, hes related family bHLH transcription factor with YRPW motif 2, [Score=55.1, Expect=1e-07]; ENSG00000187821, HELT, helt bHLH transcription factor, [Score=55.1, Expect=1e-07]} {Mouse: ENSMUSG00000032744, Heyl, hairy/enhancer-of-split related with YRPW motif-like, [Score=56.6, Expect=4e-08]; ENSMUSG00000047171, Helt, helt bHLH transcription factor, [Score=55.1, Expect=7e-08]; ENSMUSG00000019789, Hey2, hairy/enhancer-of-split related with YRPW motif 2, [Score=54.7, Expect=2e-07]} {Dmel: FBgn0259938, cwo, clockwork orange, [Score=63.5, Expect=4e-10]} {Celegans: WBGene00015646, mlt-10, [RH, Score=176, Expect=2e-46]} {Smed: dd_Smed_v6_22479_0_1, dd_Smed_v6_22479_0_1, [Score=51.2, Expect=9e-07]} {RNA1509_49122} {RNA1310_18992.1} {RNA815_16883}
19. MligTC455_49763 130 2.72 Mlig455_006404

Neo: -

Age: -

Region-enriched R2: 3.029/0.02346

 KREMEN1 0.961 - - - - - 0.961 Mlig455_006404 {REF} {Length: 1879} {Pfam: WSC domain [PF01822.21, score=53.7]; PAN domain [PF00024.28, score=24.0]} {Human: ENSG00000183762, KREMEN1, kringle containing transmembrane protein 1, [Score=45.1, Expect=1e-05]} {Mouse: ENSMUSG00000020393, Kremen1, kringle containing transmembrane protein 1, [Score=44.7, Expect=1e-05]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=47.8, Expect=9e-07]} {RNA1509_53783} {RNA1310_43597} {RNA815_9084.2}
20. MligTC455_52149 336 7.01 Mlig455_012974

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.317

 TTLL6 0.961 - - - - - 0.961 Mlig455_012974 {REF} {Length: 3712} {TRANSSPLICED} {Pfam: Tubulin-tyrosine ligase family [PF03133.17, score=270.4]; YheC/D like ATP-grasp [PF14398.8, score=23.7]; Sugar-transfer associated ATP-grasp [PF14397.8, score=18.8]} {Human: ENSG00000170703, TTLL6, tubulin tyrosine ligase like 6, [RH, Score=532, Expect=4e-174]} {Mouse: ENSMUSG00000045467, Ttll13, tubulin tyrosine ligase-like family, member 13, [Score=561, Expect=0.0]} {Dmel: FBgn0039501, CG5987, [RH, Score=454, Expect=7e-147]} {Celegans: WBGene00019230, ttll-11, Tubulin Tyrosine Ligase Like, [Score=212, Expect=1e-57]} {Smed: dd_Smed_v6_8131_0_1, dd_Smed_v6_8131_0_1, [RH, Score=706, Expect=0.0]} {RNA1509_15498} {RNA1310_4663, RNA1509_15498} {RNA1509_15498, RNA815_9052}
21. MligTC455_23752 138 2.87 Mlig455_056854

Neo: -

Age: Up-Down-Down

 GRIK3 0.959 - - - - - 0.959 Mlig455_056854 {REF} {Length: 4616} {Pfam: Ligand-gated ion channel [PF00060.28, score=110.6]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=92.2]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=86.6]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=222, Expect=9e-60]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=219, Expect=6e-59]; ENSG00000155511, GRIA1, glutamate ionotropic receptor AMPA type subunit 1, [Score=218, Expect=9e-59]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=217, Expect=4e-58]; ENSG00000152578, GRIA4, glutamate ionotropic receptor AMPA type subunit 4, [Score=215, Expect=2e-57]; ENSG00000125675, GRIA3, glutamate ionotropic receptor AMPA type subunit 3, [Score=214, Expect=3e-57]; ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=212, Expect=3e-56]; ENSG00000182771, GRID1, glutamate ionotropic receptor delta type subunit 1, [Score=212, Expect=4e-56]; ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=211, Expect=6e-56]; ENSG00000105737, GRIK5, glutamate ionotropic receptor kainate type subunit 5, [Score=211, Expect=6e-56]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=223, Expect=5e-60]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=220, Expect=4e-59]; ENSMUSG00000020524, Gria1, glutamate receptor, ionotropic, AMPA1 (alpha 1), [Score=217, Expect=2e-58]; ENSMUSG00000001986, Gria3, glutamate receptor, ionotropic, AMPA3 (alpha 3), [Score=216, Expect=6e-58]; ENSMUSG00000025892, Gria4, glutamate receptor, ionotropic, AMPA4 (alpha 4), [Score=216, Expect=6e-58]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=214, Expect=4e-57]; ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=214, Expect=5e-57]} {Dmel: FBgn0031634, Ir25a, Ionotropic receptor 25a, [RH, Score=294, Expect=8e-85]} {Celegans: WBGene00001618, glr-7, GLutamate Receptor family (AMPA), [RH, Score=320, Expect=6e-95]} {Smed: dd_Smed_v6_16476_0_1, dd_Smed_v6_16476_0_1, [RH, Score=658, Expect=0.0]} {RNA1509_25374} {RNA1310_4098, RNA1509_25374} {RNA1509_25374, RNA815_19029}
22. MligTC455_46313 525 10.93 Mlig455_061072, Mlig455_061118

Neo: -

Age: Down-Up-Down

 0.958 - - - - - 0.958

Mlig455_061072 {REF} {Length: 1336} {Pfam: Stathmin family [PF00836.21, score=30.8]} {Smed: dd_Smed_v6_512_0_1, dd_Smed_v6_512_0_1, [Score=63.2, Expect=3e-14]} {RNA1509_8850} {RNA1310_39143} {RNA815_16363}

Mlig455_061118 {REF} {Length: 1813} {Pfam: Stathmin family [PF00836.21, score=27.4]} {Smed: dd_Smed_v6_512_0_1, dd_Smed_v6_512_0_1, [Score=63.5, Expect=2e-14]} {RNA1509_8850} {RNA1310_39143} {RNA815_16363}
23. MligTC455_14476 32 0.67 Mlig455_030043

Neo: -

Age: -

Regeneration-upregulated R2: 9.396

Regeneration-enriched R2: 9.396

 0.957 - - - - - 0.957 Mlig455_030043 {REF} {Length: 2083} {RNA1509_4043} {RNA1310_3308.1} {RNA815_1039.1}
24. MligTC455_53721 868 18.09 Mlig455_025205

Neo: -

Age: Down-Up-Up

Region-enriched R2: 1.531/0.01572

 0.955 - - - - - 0.955 Mlig455_025205 {REF} {Length: 1174} {Pfam: Sel1 repeat [PF08238.14, score=31.9]} {Smed: dd_Smed_v6_9387_0_1, dd_Smed_v6_9387_0_1, [RH, Score=194, Expect=2e-62]} {RNA1509_19616} {RNA1310_29567} {RNA815_13742}
25. MligTC455_21353 452 9.41 Mlig455_004209, Mlig455_004221

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.406

 0.954 - - - - - 0.954

Mlig455_004209 {REF} {Length: 1786} {Smed: dd_Smed_v6_11196_0_1, dd_Smed_v6_11196_0_1, [RH, Score=100, Expect=1e-24]} {RNA1509_45598} {RNA1310_22701, RNA1509_45598} {RNA1509_45598, RNA815_19949}

Mlig455_004221 {REF} {Length: 1440} {Smed: dd_Smed_v6_11196_0_1, dd_Smed_v6_11196_0_1, [Score=84.0, Expect=9e-19]} {RNA1509_45598} {RNA1310_32084} {RNA815_19949}
26. MligTC455_53990 402 8.37 Mlig455_019544

Neo: -

Age: -

Regeneration-upregulated BL: 2.596

Regeneration-enriched BL: 2.596

 UBE2E2 0.954 - - - 0.954 - - Mlig455_019544 {REF} {Length: 2892} {TRANSSPLICED} {Pfam: Ubiquitin-conjugating enzyme [PF00179.28, score=159.6]} {Human: ENSG00000182247, UBE2E2, ubiquitin conjugating enzyme E2 E2, [RH, Score=284, Expect=1e-97]; ENSG00000170142, UBE2E1, ubiquitin conjugating enzyme E2 E1, [RH, Score=280, Expect=2e-96]; ENSG00000170035, UBE2E3, ubiquitin conjugating enzyme E2 E3, [RH, Score=279, Expect=8e-96]} {Mouse: ENSMUSG00000058317, Ube2e2, ubiquitin-conjugating enzyme E2E 2, [RH, Score=284, Expect=8e-98]; ENSMUSG00000021774, Ube2e1, ubiquitin-conjugating enzyme E2E 1, [RH, Score=280, Expect=2e-96]; ENSMUSG00000027011, Ube2e3, ubiquitin-conjugating enzyme E2E 3, [RH, Score=279, Expect=5e-96]} {Dmel: FBgn0015320, Ubc2, Ubiquitin conjugating enzyme 2, [RH, Score=295, Expect=4e-102]} {Celegans: WBGene00002344, let-70, Ubiquitin-conjugating enzyme E2 2, [Score=202, Expect=2e-66]} {Smed: dd_Smed_v6_7817_0_1, dd_Smed_v6_7817_0_1, [RH, Score=239, Expect=4e-80]} {RNA1509_33134, RNA1509_34609, RNA1509_35155, RNA1509_41401} {RNA1310_21418.1, RNA1509_33134, RNA1509_34609, RNA1509_35155, RNA1509_41401} {RNA1509_33134, RNA1509_34609, RNA1509_35155, RNA1509_41401, RNA815_20747.1}
27. MligTC455_23598 236 4.92 Mlig455_025573

Neo: -

Age: Up-Down-Down

Region-enriched R8: 3.347/0.00904

Regeneration-downregulated BL: -7.152

Regeneration-depleted BL: -7.152

 FBN1 0.953 - - - - - 0.953 Mlig455_025573 {REF} {Length: 8300} {Pfam: Calcium-binding EGF domain [PF07645.17, score=308.8]; Complement Clr-like EGF-like [PF12662.9, score=240.6]; Coagulation Factor Xa inhibitory site [PF14670.8, score=137.8]; EGF domain [PF12947.9, score=103.1]; EGF-like domain [PF00008.29, score=67.3]; Human growth factor-like EGF [PF12661.9, score=42.0]; Thrombospondin type 1 domain [PF00090.21, score=27.9]; MSP1 EGF domain 1 [PF12946.9, score=23.5]} {Human: ENSG00000166147, FBN1, fibrillin 1, [Score=274, Expect=5e-73]; ENSG00000138829, FBN2, fibrillin 2, [Score=265, Expect=2e-70]; ENSG00000142449, FBN3, fibrillin 3, [Score=263, Expect=1e-69]} {Mouse: ENSMUSG00000027204, Fbn1, fibrillin 1, [Score=291, Expect=2e-78]} {Dmel: FBgn0035798, frac, faulty attraction, [RH, Score=235, Expect=8e-62]} {Celegans: WBGene00001403, fbl-1, Fibulin-1, [Score=165, Expect=2e-41]} {Smed: dd_Smed_v6_2649_0_2, dd_Smed_v6_2649_0_2, [Score=292, Expect=8e-79]} {RNA1509_13106} {RNA1310_487} {RNA815_5734}
28. MligTC455_43353 428 8.91 Mlig455_003476

Neo: -

Age: -

 0.953 - - - - - 0.953 Mlig455_003476 {REF} {Length: 2887} {Smed: dd_Smed_v6_9265_0_1, dd_Smed_v6_9265_0_1, [Score=108, Expect=2e-26]} {RNA1509_49114, RNA1509_59769} {RNA1310_21358, RNA1509_49114, RNA1509_59769} {RNA1509_49114, RNA1509_59769, RNA815_21652}
29. MligTC455_01122 9 0.19 Mlig455_050074

Neo: -

Age: -

 0.952 - - - - - 0.952 Mlig455_050074 {REF} {Length: 752} {NoTransDecoderORF} {RNA1509_32122} {RNA1310_75878} {RNA815_35548}
30. MligTC455_14180 139 2.89 Mlig455_043810

Neo: -

Age: Down-Up-Up

 0.952 - - - - - 0.952 Mlig455_043810 {REF} {Length: 1531} {RNA1509_15671} {RNA1310_24777} {RNA815_10623}
31. MligTC455_35529 117 2.43 Mlig455_020107, Mlig455_069888

Neo: -

Age: -

 0.952 - - - - - 0.952

Mlig455_020107 {REF} {Length: 3566} {RNA1509_53783} {RNA1310_29335.1} {RNA815_9084.1}

Mlig455_069888 {REF} {Length: 2216} {RNA1509_44264} {RNA1310_56703} {RNA815_9084.1}
32. MligTC455_17187 85 1.77 Mlig455_040722

Neo: -

Age: logFC(26M/2M)=-0.644

 SCNN1B 0.951 - - 0.951 - - - Mlig455_040722 {REF} {Length: 2368} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=164.4]} {Human: ENSG00000168447, SCNN1B, sodium channel epithelial 1 beta subunit, [Score=64.3, Expect=5e-10]} {Mouse: ENSMUSG00000020704, Asic2, acid-sensing (proton-gated) ion channel 2, [Score=58.5, Expect=2e-08]} {Smed: dd_Smed_v6_25838_0_1, dd_Smed_v6_25838_0_1, [Score=230, Expect=3e-67]} {RNA1509_57515} {RNA1310_24808, RNA1509_57515} {RNA1509_57515, RNA815_46525}
33. MligTC455_37092 161 3.35 Mlig455_048271

Neo: -

Age: -

 RNF34 0.951 - - - 0.951 - - Mlig455_048271 {REF} {Length: 2881} {TRANSSPLICED} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=38.8]; FYVE-type zinc finger [PF02318.18, score=19.1]; Prokaryotic RING finger family 4 [PF14447.8, score=18.8]} {Human: ENSG00000170633, RNF34, ring finger protein 34, [RH, Score=139, Expect=3e-38]; ENSG00000092871, RFFL, ring finger and FYVE like domain containing E3 ubiquitin protein ligase, [RH, Score=137, Expect=7e-36]; ENSG00000267618, RAD51L3-RFFL, RAD51L3-RFFL readthrough, [RH, Score=136, Expect=3e-36]} {Mouse: ENSMUSG00000029474, Rnf34, ring finger protein 34, [RH, Score=143, Expect=6e-38]; ENSMUSG00000020696, Rffl, ring finger and FYVE like domain containing protein, [RH, Score=142, Expect=2e-37]} {Dmel: FBgn0033783, CG17019, [RH, Score=134, Expect=3e-33]} {Celegans: WBGene00017342, F10D7.5, [RH, Score=62.8, Expect=2e-10]} {Smed: dd_Smed_v6_6206_0_1, dd_Smed_v6_6206_0_1, [Score=110, Expect=8e-27]} {RNA1509_13117, RNA1509_16106} {RNA1310_5737.1, RNA1509_13117} {RNA1509_13117, RNA815_6542}
34. MligTC455_41988 81 1.68 Mlig455_049279, Mlig455_050624

Neo: -

Age: -

 0.951 - - - - - 0.951

Mlig455_049279 {REF} {Length: 6361} {Pfam: Innexin [PF00876.20, score=408.1]} {Dmel: FBgn0085387, shakB, shaking B, [RH, Score=133, Expect=1e-34]} {Celegans: WBGene00002123, inx-1, Innexin, [Score=341, Expect=5e-114]} {Smed: dd_Smed_v6_11077_0_2, dd_Smed_v6_11077_0_2, [RH, Score=483, Expect=3e-168]} {RNA1509_51082} {RNA1310_22380} {RNA815_25566}

Mlig455_050624 {REF} {Length: 2845} {Pfam: Innexin [PF00876.20, score=408.0]} {Dmel: FBgn0085387, shakB, shaking B, [RH, Score=133, Expect=2e-34]} {Celegans: WBGene00002123, inx-1, Innexin, [Score=342, Expect=3e-114]} {Smed: dd_Smed_v6_11077_0_2, dd_Smed_v6_11077_0_2, [RH, Score=484, Expect=1e-168]} {RNA1509_51082} {RNA1310_22380} {RNA815_1848.2}
35. MligTC455_08896 38 0.78 Mlig455_048380

Neo: -

Age: -

 0.95 - - - - - 0.950 Mlig455_048380 {REF} {Length: 341} {TRANSSPLICED} {RNA1310_46010} {RNA815_47858}
36. MligTC455_11059 54 1.13 Mlig455_034683

Neo: -

Age: -

 0.95 - - - 0.950 - - Mlig455_034683 {REF} {Length: 1017} {NoTransDecoderORF} {RNA1509_16318} {RNA1310_94190} {RNA815_40826}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA