TomoSeq data search

Data search

Results for MligTC455_37448

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_37448

714

14.87

Mlig455_007744, Mlig455_066068

Neo: -

Age: Down-Down-Up

RP1L1

Mlig455_007744 {REF} {Length: 3944} {Human: ENSG00000285131, RP1L1, RP1 like 1, [Score=55.1, Expect=1e-06]; ENSG00000196440, ARMCX4, armadillo repeat containing X-linked 4, [Score=53.1, Expect=2e-06]} {Mouse: ENSMUSG00000020396, Nefh, neurofilament, heavy polypeptide, [Score=85.9, Expect=2e-16]} {Dmel: FBgn0029807, CG3108, [Score=72.4, Expect=2e-12]} {RNA1509_52676} {RNA1310_13856} {RNA815_2540.1}

Mlig455_066068 {REF} {Length: 3431} {Human: ENSG00000285131, RP1L1, RP1 like 1, [Score=56.2, Expect=3e-07]; ENSG00000100285, NEFH, neurofilament heavy, [Score=54.3, Expect=1e-06]} {Mouse: ENSMUSG00000020396, Nefh, neurofilament, heavy polypeptide, [Score=96.7, Expect=7e-20]} {Dmel: FBgn0029807, CG3108, [Score=71.2, Expect=4e-12]} {RNA1509_52676} {RNA1310_13856} {RNA815_18535}

Cumulative graph for MligTC455_37448

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.573	4.099	0.72742	1.00000
RegionR2	0.598	4.099	0.32834	0.72036
RegionR3	0.406	4.099	0.43902	0.95602
RegionR4	-0.575	4.099	0.39844	0.72502
RegionR5	-0.865	4.099	0.10973	0.32512
RegionR6	-0.323	4.099	0.55495	1.00000
RegionR7	-0.743	4.099	0.36177	0.99764
RegionR8	0.929	4.099	0.26714	0.89131

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	1.675	4.099	0.28419	0.98374
RegenerationR2	1.023	4.099	0.04838	0.36349
RegenerationR3	0.054	4.099	0.92601	1.00000
RegenerationR4	1.138	4.099	0.07173	0.42569
RegenerationR5	0.499	4.099	0.39239	0.79398
RegenerationR6	0.58	4.099	0.34558	0.69103
RegenerationBL	1.313	4.099	0.03145	0.19834
RegenerationTP	1.19	4.099	0.08846	0.46883

Genes with expression patterns similar to MligTC455_37448

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_37448	714	14.87	Mlig455_007744, Mlig455_066068	Neo: - Age: Down-Down-Up	RP1L1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_007744 {REF} {Length: 3944} {Human: ENSG00000285131, RP1L1, RP1 like 1, [Score=55.1, Expect=1e-06]; ENSG00000196440, ARMCX4, armadillo repeat containing X-linked 4, [Score=53.1, Expect=2e-06]} {Mouse: ENSMUSG00000020396, Nefh, neurofilament, heavy polypeptide, [Score=85.9, Expect=2e-16]} {Dmel: FBgn0029807, CG3108, [Score=72.4, Expect=2e-12]} {RNA1509_52676} {RNA1310_13856} {RNA815_2540.1} Mlig455_066068 {REF} {Length: 3431} {Human: ENSG00000285131, RP1L1, RP1 like 1, [Score=56.2, Expect=3e-07]; ENSG00000100285, NEFH, neurofilament heavy, [Score=54.3, Expect=1e-06]} {Mouse: ENSMUSG00000020396, Nefh, neurofilament, heavy polypeptide, [Score=96.7, Expect=7e-20]} {Dmel: FBgn0029807, CG3108, [Score=71.2, Expect=4e-12]} {RNA1509_52676} {RNA1310_13856} {RNA815_18535}
2.	MligTC455_47148	1161	24.18	Mlig455_054041	Neo: - Age: logFC(26M/2M)=-0.290	TTC24	1.808	-	-	-	0.853	-	0.955	Mlig455_054041 {REF} {Length: 2392} {TRANSSPLICED} {Pfam: Tetratricopeptide repeat [PF13424.8, score=77.4]; Tetratricopeptide repeat [PF07719.19, score=61.9]; Tetratricopeptide repeat [PF13176.8, score=54.0]; Tetratricopeptide repeat [PF00515.30, score=52.7]; Tetratricopeptide repeat [PF13181.8, score=35.3]; MalT-like TPR region [PF17874.3, score=20.9]} {Human: ENSG00000187862, TTC24, tetratricopeptide repeat domain 24, [RH, Score=102, Expect=5e-22]} {Mouse: ENSMUSG00000051036, Ttc24, tetratricopeptide repeat domain 24, [RH, Score=66.6, Expect=2e-11]} {RNA1509_21506, RNA1509_39716, RNA1509_7768} {RNA1310_13043, RNA1509_21506, RNA1509_39716, RNA1509_7768} {RNA1509_21506, RNA1509_39716, RNA1509_7768, RNA815_789.1}
3.	MligTC455_46024	839	17.48	Mlig455_039211	Neo: - Age: - Region-enriched R8: 2.486/0.00519	STOM	1.773	-	-	-	-	0.785	0.988	Mlig455_039211 {REF} {Length: 3409} {Pfam: SPFH domain / Band 7 family [PF01145.27, score=111.0]; SPFH domain-Band 7 family [PF13421.8, score=19.5]} {Human: ENSG00000148175, STOM, stomatin, [RH, Score=360, Expect=4e-125]} {Mouse: ENSMUSG00000026880, Stom, stomatin, [RH, Score=358, Expect=1e-124]} {Dmel: FBgn0260657, CG42540, [Score=369, Expect=7e-126]} {Celegans: WBGene00003166, mec-2, Mechanosensory protein 2, [RH, Score=389, Expect=1e-135]} {Smed: dd_Smed_v6_6396_0_1, dd_Smed_v6_6396_0_1, [RH, Score=431, Expect=1e-153]} {RNA1509_53294} {RNA1310_20637.1} {RNA815_10589.1}
4.	MligTC455_45062	1063	22.15	Mlig455_044267	Neo: - Age: -		1.741	-	-	-	0.783	-	0.958	Mlig455_044267 {REF} {Length: 1936} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=31.9]} {Smed: dd_Smed_v6_2982_0_2, dd_Smed_v6_2982_0_2, [Score=72.0, Expect=1e-14]} {RNA1509_23162, RNA1509_50902} {RNA1310_19283, RNA1509_23162, RNA1509_50902} {RNA1509_23162, RNA1509_50902, RNA815_7600.1}
5.	MligTC455_29167	831	17.3	Mlig455_000398	Neo: - Age: Up-Down-Down	DNAH5	1.734	-	-	-	-	0.956	0.778	Mlig455_000398 {REF} {Length: 14585} {Pfam: Dynein heavy chain, N-terminal region 1 [PF08385.14, score=581.1]; Hydrolytic ATP binding site of dynein motor region [PF12774.9, score=469.7]; Dynein heavy chain, N-terminal region 2 [PF08393.15, score=434.4]; Dynein heavy chain C-terminal domain [PF18199.3, score=319.5]; P-loop containing dynein motor region D4 [PF12780.9, score=304.5]; ATP-binding dynein motor region [PF12781.9, score=284.2]; P-loop containing dynein motor region [PF12775.9, score=230.3]; Dynein heavy chain AAA lid domain [PF18198.3, score=176.9]; Microtubule-binding stalk of dynein motor [PF12777.9, score=135.9]; Dynein heavy chain region D6 P-loop domain [PF03028.17, score=120.1]; AAA domain (dynein-related subfamily) [PF07728.16, score=80.3]; Dynein heavy chain AAA lid domain [PF17852.3, score=66.4]; AAA+ lid domain [PF17857.3, score=62.9]; AAA ATPase domain [PF13191.8, score=24.5]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=23.0]; AAA domain [PF13401.8, score=20.7]; BRE1 E3 ubiquitin ligase [PF08647.13, score=19.9]; P-loop containing region of AAA domain [PF13555.8, score=19.7]} {Human: ENSG00000039139, DNAH5, dynein axonemal heavy chain 5, [RH, Score=6261, Expect=0.0]} {Mouse: ENSMUSG00000022262, Dnah5, dynein, axonemal, heavy chain 5, [RH, Score=6235, Expect=0.0]} {Dmel: FBgn0037726, CG9492, [RH, Score=5129, Expect=0.0]} {Celegans: WBGene00000962, dhc-1, Dynein heavy chain, cytoplasmic, [Score=1287, Expect=0.0]} {Smed: dd_Smed_v6_4569_0_1, dd_Smed_v6_4569_0_1, [RH, Score=6966, Expect=0.0]} {RNA1509_653} {RNA1310_37.1} {RNA815_534.1}
6.	MligTC455_19069	3067	63.89	Mlig455_006883	Neo: - Age: - Region-specific R2: 2.330 Region-enriched R2: 1.710/0.00004 Regeneration-downregulated BL: -1.680 Regeneration-depleted BL: -1.680		1.677	-	-	-	-	0.719	0.958	Mlig455_006883 {REF} {Length: 1337} {RNA1509_18484} {RNA1310_63073.1} {RNA815_40214.1}
7.	MligTC455_27938	137	2.85	Mlig455_033961	Neo: - Age: -		1.666	-	-	-	0.715	0.951	-	Mlig455_033961 {REF} {Length: 3296} {Pfam: Glycine rich protein [PF12810.9, score=20.4]} {RNA1310_28736.1} {RNA815_45605}
8.	MligTC455_37269	173	3.61	Mlig455_020047	Neo: - Age: -	CASP3	0.978	-	-	-	-	0.978	-	Mlig455_020047 {REF} {Length: 2828} {Pfam: Caspase domain [PF00656.24, score=94.7]; Ankyrin repeats (3 copies) [PF12796.9, score=79.1]; Ankyrin repeats (many copies) [PF13857.8, score=62.0]; Ankyrin repeats (many copies) [PF13637.8, score=58.0]; Ankyrin repeat [PF13606.8, score=40.7]; Ankyrin repeat [PF00023.32, score=31.7]} {Human: ENSG00000164305, CASP3, caspase 3, [Score=111, Expect=1e-26]; ENSG00000003400, CASP10, caspase 10, [Score=107, Expect=9e-24]} {Mouse: ENSMUSG00000031628, Casp3, caspase 3, [Score=106, Expect=5e-25]; ENSMUSG00000025076, Casp7, caspase 7, [Score=106, Expect=7e-25]} {Dmel: FBgn0010501, Dcp-1, Death caspase-1, [Score=96.3, Expect=2e-21]} {Celegans: WBGene00000417, ced-3, Cell death protein 3 Cell death protein 3 subunit 1 Cell death protein 3 subunit 2, [Score=81.6, Expect=9e-17]} {Smed: dd_Smed_v6_10883_0_1, dd_Smed_v6_10883_0_1, [Score=107, Expect=1e-24]} {RNA1509_54818} {RNA1310_7187} {RNA815_8712}
9.	MligTC455_40552	2699	56.24	Mlig455_069563	Neo: - Age: logFC(26M/2M)=-0.370 Region-enriched R8: 2.123/0.00000 Region-enriched R2: 1.620/0.00041 Region-enriched R7: 1.568/0.00015 Regeneration-downregulated BL: -1.946 Regeneration-depleted BL: -1.946		0.973	-	-	-	-	-	0.973	Mlig455_069563 {REF} {Length: 991} {RNA1509_15221, RNA1509_20766, RNA1509_20891} {RNA1310_40329, RNA1509_15221, RNA1509_20766, RNA1509_20891} {RNA1509_15221, RNA1509_20766, RNA1509_20891, RNA815_19163}
10.	MligTC455_46480	3489	72.68	Mlig455_029170	Neo: - Age: -	PLSCR3	0.968	-	-	-	-	-	0.968	Mlig455_029170 {REF} {Length: 1715} {Pfam: Scramblase [PF03803.17, score=198.5]} {Human: ENSG00000284009, PLSCR3, phospholipid scramblase 3, [Score=182, Expect=3e-56]; ENSG00000187838, PLSCR3, phospholipid scramblase 3, [Score=182, Expect=3e-56]} {Mouse: ENSMUSG00000019461, Plscr3, phospholipid scramblase 3, [Score=180, Expect=1e-55]} {Dmel: FBgn0052056, scramb1, scramblase 1, [Score=149, Expect=2e-44]} {Celegans: WBGene00011935, scrm-1, Phospholipid scramblase, [Score=134, Expect=2e-38]} {Smed: dd_Smed_v6_6988_0_1, dd_Smed_v6_6988_0_1, [Score=205, Expect=3e-66]} {RNA1509_24275, RNA1509_6872} {RNA1310_19869.1, RNA1509_24275, RNA1509_6872} {RNA1509_24275, RNA1509_6872, RNA815_8634}
11.	MligTC455_45980	1485	30.93	Mlig455_048042	Neo: - Age: Down-Up-Down	CYP2J2	0.965	-	-	-	-	-	0.965	Mlig455_048042 {REF} {Length: 2693} {Pfam: Cytochrome P450 [PF00067.24, score=306.1]} {Human: ENSG00000134716, CYP2J2, cytochrome P450 family 2 subfamily J member 2, [Score=225, Expect=5e-67]; ENSG00000155016, CYP2U1, cytochrome P450 family 2 subfamily U member 1, [Score=223, Expect=7e-66]; ENSG00000197838, CYP2A13, cytochrome P450 family 2 subfamily A member 13, [Score=215, Expect=3e-63]; ENSG00000138115, CYP2C8, cytochrome P450 family 2 subfamily C member 8, [Score=214, Expect=6e-63]} {Mouse: ENSMUSG00000052914, Cyp2j6, cytochrome P450, family 2, subfamily j, polypeptide 6, [Score=233, Expect=5e-70]; ENSMUSG00000081225, Cyp2j12, cytochrome P450, family 2, subfamily j, polypeptide 12, [Score=231, Expect=2e-69]; ENSMUSG00000052520, Cyp2j5, cytochrome P450, family 2, subfamily j, polypeptide 5, [Score=228, Expect=2e-68]; ENSMUSG00000066704, Cyp2b19, cytochrome P450, family 2, subfamily b, polypeptide 19, [Score=226, Expect=1e-67]} {Dmel: FBgn0010383, Cyp18a1, Cytochrome P450-18a1, [Score=230, Expect=8e-69]} {Celegans: WBGene00018413, cyp-33C4, CYtochrome P450 family, [Score=233, Expect=2e-70]} {Smed: dd_Smed_v6_8600_0_1, dd_Smed_v6_8600_0_1, [Score=266, Expect=4e-83]} {RNA1509_45458, RNA1509_8101} {RNA1310_14418, RNA1509_45458, RNA1509_8101} {RNA1509_45458, RNA1509_8101, RNA815_4157.2}
12.	MligTC455_40297	755	15.72	Mlig455_050934, Mlig455_067795	Neo: - Age: -	PLPP1, PLPP2	0.958	-	-	-	0.958	-	-	Mlig455_050934 {REF} {Length: 1301} {TRANSSPLICED} {Pfam: PAP2 superfamily [PF01569.23, score=50.9]} {Human: ENSG00000067113, PLPP1, phospholipid phosphatase 1, [Score=85.5, Expect=1e-18]; ENSG00000141934, PLPP2, phospholipid phosphatase 2, [Score=82.4, Expect=1e-17]} {Mouse: ENSMUSG00000028517, Plpp3, phospholipid phosphatase 3, [Score=81.6, Expect=3e-17]; ENSMUSG00000021759, Plpp1, phospholipid phosphatase 1, [Score=80.9, Expect=3e-17]; ENSMUSG00000052151, Plpp2, phospholipid phosphatase 2, [Score=79.7, Expect=7e-17]} {Dmel: FBgn0037164, CG11438, [Score=100, Expect=3e-24]} {Celegans: WBGene00018756, F53C3.13, [Score=75.5, Expect=2e-15]} {Smed: dd_Smed_v6_1907_0_1, dd_Smed_v6_1907_0_1, [Score=75.5, Expect=1e-15]} {RNA1509_18733} {RNA1310_22930} {RNA815_20763} Mlig455_067795 {REF} {Length: 1350} {TRANSSPLICED} {Pfam: PAP2 superfamily [PF01569.23, score=65.9]} {Human: ENSG00000141934, PLPP2, phospholipid phosphatase 2, [Score=73.6, Expect=1e-16]; ENSG00000067113, PLPP1, phospholipid phosphatase 1, [Score=72.4, Expect=1e-15]} {Mouse: ENSMUSG00000052151, Plpp2, phospholipid phosphatase 2, [Score=69.7, Expect=3e-15]; ENSMUSG00000021759, Plpp1, phospholipid phosphatase 1, [Score=69.7, Expect=8e-15]; ENSMUSG00000028517, Plpp3, phospholipid phosphatase 3, [Score=68.2, Expect=4e-14]} {Dmel: FBgn0016078, wun, wunen, [Score=82.0, Expect=3e-19]} {Celegans: WBGene00018756, F53C3.13, [Score=68.9, Expect=1e-14]} {Smed: dd_Smed_v6_1907_0_1, dd_Smed_v6_1907_0_1, [Score=64.7, Expect=2e-13]} {RNA1509_18733} {RNA1310_22930} {RNA815_20763}
13.	MligTC455_11611	519	10.8	Mlig455_070577	Neo: - Age: Down-Up-Down		0.952	-	-	-	-	-	0.952	Mlig455_070577 {REF} {Length: 3316} {TRANSSPLICED} {RNA1509_27526, RNA1509_42539} {RNA1310_21583, RNA1509_42539} {RNA1509_42539, RNA815_12355}
14.	MligTC455_20908	268	5.58	Mlig455_000262	Neo: - Age: Up-Down-Down	NALCN	0.952	-	-	-	0.952	-	-	Mlig455_000262 {REF} {Length: 6526} {TRANSSPLICED} {Pfam: Ion transport protein [PF00520.33, score=369.8]; Polycystin cation channel [PF08016.14, score=20.1]} {Human: ENSG00000102452, NALCN, sodium leak channel, non-selective, [Score=1434, Expect=0.0]} {Mouse: ENSMUSG00000000197, Nalcn, sodium leak channel, non-selective, [Score=1439, Expect=0.0]} {Dmel: FBgn0002917, na, narrow abdomen, [Score=1431, Expect=0.0]} {Celegans: WBGene00006809, unc-77, Four domain-type voltage-gated ion channel alpha-1 subunit, [Score=1234, Expect=0.0]} {Smed: dd_Smed_v6_7314_0_1, dd_Smed_v6_7314_0_1, [Score=1574, Expect=0.0]} {RNA1509_7317} {RNA1310_530.1} {RNA815_339.1}
15.	MligTC455_23747	911	18.99	Mlig455_029661	Neo: - Age: - Region-enriched R8: 1.483/0.03070 Region-enriched R2: 1.274/0.04794	RYR2	0.951	-	-	-	-	0.951	-	Mlig455_029661 {REF} {Length: 16009} {Pfam: RIH domain [PF01365.23, score=380.6]; RyR domain [PF02026.18, score=278.1]; Inositol 1,4,5-trisphosphate/ryanodine receptor [PF08709.13, score=160.6]; SPRY domain [PF00622.30, score=160.1]; MIR domain [PF02815.21, score=149.6]; Ryanodine Receptor TM 4-6 [PF06459.14, score=119.4]; RyR and IP3R Homology associated [PF08454.13, score=108.6]; Ion transport protein [PF00520.33, score=45.5]; EF hand [PF00036.34, score=43.1]; EF-hand domain pair [PF13499.8, score=39.4]; EF hand [PF13202.8, score=36.6]; EF-hand domain pair [PF13833.8, score=34.5]; EF-hand domain [PF13405.8, score=25.2]} {Human: ENSG00000198626, RYR2, ryanodine receptor 2, [RH, Score=3262, Expect=0.0]} {Mouse: ENSMUSG00000021313, Ryr2, ryanodine receptor 2, cardiac, [RH, Score=3244, Expect=0.0]} {Dmel: FBgn0011286, RyR, Ryanodine receptor, [RH, Score=2369, Expect=0.0]} {Celegans: WBGene00006801, unc-68, [RH, Score=1419, Expect=0.0]} {Smed: dd_Smed_v6_5582_0_1, dd_Smed_v6_5582_0_1, [RH, Score=4415, Expect=0.0]} {RNA1509_827} {RNA1310_30.1} {RNA815_76.1}

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