M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_37972

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_37972 58 1.22 Mlig455_013390

Neo: -

Age: -

 SPON1 Mlig455_013390 {REF} {Length: 2548} {Pfam: Spondin_N [PF06468.15, score=122.9]} {Human: ENSG00000262655, SPON1, spondin 1, [Score=134, Expect=2e-33]} {Mouse: ENSMUSG00000038156, Spon1, spondin 1, (f-spondin) extracellular matrix protein, [Score=132, Expect=3e-33]} {Dmel: FBgn0050046, CG30046, [Score=130, Expect=2e-32]} {Celegans: WBGene00006893, spon-1, SPONdin (Extracellular matrix glycoprotein) family, [Score=105, Expect=3e-24]} {Smed: dd_Smed_v6_2400_0_1, dd_Smed_v6_2400_0_1, [Score=110, Expect=3e-26]} {RNA1310_35709} {RNA815_25752}

Cumulative graph for MligTC455_37972

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.963 1.569 1.00000 1.00000
RegionR2 3.346 1.569 0.01656 0.13672
RegionR3 1.624 1.569 0.18510 0.71941
RegionR4 0.135 1.569 0.73454 1.00000
RegionR5 -0.17 1.569 0.80890 1.00000
RegionR6 2.113 1.569 0.08141 0.52729
RegionR7 0.682 1.569 0.61155 1.00000
RegionR8 -3.766 1.569 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.109 1.569 0.99991 1.00000
RegenerationR2 -0.909 1.569 0.26977 0.71580
RegenerationR3 1 1.569 0.29489 0.72656
RegenerationR4 0.529 1.569 0.65646 0.93619
RegenerationR5 1.207 1.569 0.21763 0.65215
RegenerationR6 -0.603 1.569 0.57504 0.85469
RegenerationBL -2.172 1.569 1.00000 1.00000
RegenerationTP 3.168 1.569 0.15154 0.57612


Genes with expression patterns similar to MligTC455_37972

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_37972 58 1.22 Mlig455_013390

Neo: -

Age: -

 SPON1 5 - 1.000 1.000 1.000 1.000 1.000 Mlig455_013390 {REF} {Length: 2548} {Pfam: Spondin_N [PF06468.15, score=122.9]} {Human: ENSG00000262655, SPON1, spondin 1, [Score=134, Expect=2e-33]} {Mouse: ENSMUSG00000038156, Spon1, spondin 1, (f-spondin) extracellular matrix protein, [Score=132, Expect=3e-33]} {Dmel: FBgn0050046, CG30046, [Score=130, Expect=2e-32]} {Celegans: WBGene00006893, spon-1, SPONdin (Extracellular matrix glycoprotein) family, [Score=105, Expect=3e-24]} {Smed: dd_Smed_v6_2400_0_1, dd_Smed_v6_2400_0_1, [Score=110, Expect=3e-26]} {RNA1310_35709} {RNA815_25752}
2. MligTC455_23116 83 1.72 Mlig455_036224

Neo: -

Age: logFC(26M/2M)=-0.695

Region-enriched R2: 3.745/0.02282

 1.812 - 0.859 0.953 - - - Mlig455_036224 {REF} {Length: 2343} {Pfam: Tetraspanin family [PF00335.22, score=66.7]} {Dmel: FBgn0036769, Tsp74F, Tetraspanin 74F, [Score=54.3, Expect=1e-08]} {Celegans: WBGene00006633, tsp-7, Tetraspanin, [Score=57.4, Expect=7e-10]} {Smed: dd_Smed_v6_440_0_1, dd_Smed_v6_440_0_1, [Score=60.1, Expect=8e-11]} {RNA1509_49336, RNA1509_54754} {RNA1310_31707, RNA1509_49336} {RNA1509_49336, RNA815_13877}
3. MligTC455_08591 42 0.87 Mlig455_020619

Neo: -

Age: -

 PHOX2B 1.724 - 0.763 0.961 - - - Mlig455_020619 {REF} {Length: 1413} {Pfam: Homeodomain [PF00046.31, score=80.5]} {Human: ENSG00000109132, PHOX2B, paired like homeobox 2B, [RH, Score=135, Expect=3e-36]; ENSG00000165462, PHOX2A, paired like homeobox 2A, [RH, Score=129, Expect=2e-34]} {Mouse: ENSMUSG00000012520, Phox2b, paired-like homeobox 2b, [RH, Score=135, Expect=2e-36]; ENSMUSG00000007946, Phox2a, paired-like homeobox 2a, [RH, Score=129, Expect=1e-34]} {Dmel: FBgn0025334, PHDP, Putative homeodomain protein, [RH, Score=119, Expect=2e-31]} {Celegans: WBGene00000440, ceh-17, C. Elegans Homeobox; CEH-17, [RH, Score=132, Expect=2e-36]} {Smed: dd_Smed_v6_29211_0_1, dd_Smed_v6_29211_0_1, [RH, Score=146, Expect=2e-40]} {RNA1310_111052}
4. MligTC455_53656 27 0.57 Mlig455_033327

Neo: -

Age: -

 0.985 - - 0.985 - - - Mlig455_033327 {REF} {Length: 1116} {Smed: dd_Smed_v6_91651_0_1, dd_Smed_v6_91651_0_1, [Score=43.9, Expect=6e-06]} {RNA1509_48973} {RNA1310_39833} {RNA815_36286}
5. MligTC455_14516 344 7.17 Mlig455_006080, Mlig455_068033

Neo: -

Age: -

Region-enriched R2: 2.671/0.04041

 0.976 - - 0.976 - - -

Mlig455_006080 {REF} {Length: 1977} {RNA1509_31100} {RNA1310_11196} {RNA815_24298}

Mlig455_068033 {REF} {Length: 2488} {RNA1509_31100} {RNA1310_11196, RNA1509_31100} {RNA1509_31100, RNA815_24298}
6. MligTC455_36776 282 5.87 Mlig455_065722

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.615

Region-enriched R6: 6.284/0.00000
Region-enriched R2: 5.336/0.00441

 0.971 - - 0.971 - - - Mlig455_065722 {REF} {Length: 907} {RNA1509_48740} {RNA1310_54738.2, RNA1509_48740} {RNA1509_48740, RNA815_27047}
7. MligTC455_29610 243 5.06 Mlig455_031720

Neo: -

Age: Up-Down-Up

 RBM12 0.967 - - - - 0.967 - Mlig455_031720 {REF} {Length: 8472} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=46.3]} {Human: ENSG00000244462, RBM12, RNA binding motif protein 12, [RH, Score=99.8, Expect=5e-22]} {Mouse: ENSMUSG00000089824, Rbm12, RNA binding motif protein 12, [RH, Score=97.8, Expect=1e-21]} {Dmel: FBgn0035235, CG7879, [Score=116, Expect=8e-26]} {Celegans: WBGene00013703, Y106G6D.7, [Score=97.4, Expect=5e-20]} {Smed: dd_Smed_v6_5908_0_1, dd_Smed_v6_5908_0_1, [RH, Score=108, Expect=8e-24]} {RNA1509_8705} {RNA1310_1058.1, RNA1509_8705} {RNA1509_8705, RNA815_1326.1}
8. MligTC455_02159 20 0.41 Mlig455_025396

Neo: -

Age: -

 0.966 - - - 0.966 - - Mlig455_025396 {REF} {Length: 270} {NoTransDecoderORF} {RNA1509_41075} {RNA1310_114067} {RNA815_22193}
9. MligTC455_09868 8 0.16 Mlig455_020000

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_020000 {REF} {Length: 286} {NoTransDecoderORF}
10. MligTC455_16861 69 1.44 Mlig455_032352, Mlig455_032369

Neo: -

Age: -

 RASL10B 0.963 - - 0.963 - - -

Mlig455_032352 {REF} {Length: 1636} {Pfam: Ras family [PF00071.24, score=85.6]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=41.8]; Elongation factor Tu GTP binding domain [PF00009.29, score=25.1]; ADP-ribosylation factor family [PF00025.23, score=23.6]} {Human: ENSG00000270885, RASL10B, RAS like family 10 member B, [RH, Score=159, Expect=1e-47]} {Mouse: ENSMUSG00000020684, Rasl10b, RAS-like, family 10, member B, [RH, Score=159, Expect=8e-48]} {Dmel: FBgn0037326, CG14669, [Score=113, Expect=3e-29]} {Celegans: WBGene00004307, rap-1, Ras-related protein Rap-1, [Score=74.3, Expect=6e-16]} {Smed: dd_Smed_v6_13540_0_1, dd_Smed_v6_13540_0_1, [RH, Score=205, Expect=4e-65]} {RNA1310_62839} {RNA815_40027}

Mlig455_032369 {REF} {Length: 1865} {Pfam: Ras family [PF00071.24, score=85.6]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=41.8]; Elongation factor Tu GTP binding domain [PF00009.29, score=25.1]; ADP-ribosylation factor family [PF00025.23, score=23.6]} {Human: ENSG00000270885, RASL10B, RAS like family 10 member B, [RH, Score=159, Expect=1e-47]} {Mouse: ENSMUSG00000020684, Rasl10b, RAS-like, family 10, member B, [RH, Score=159, Expect=8e-48]} {Dmel: FBgn0037326, CG14669, [Score=113, Expect=3e-29]} {Celegans: WBGene00004307, rap-1, Ras-related protein Rap-1, [Score=74.3, Expect=6e-16]} {Smed: dd_Smed_v6_13540_0_1, dd_Smed_v6_13540_0_1, [RH, Score=205, Expect=4e-65]} {RNA1310_62839} {RNA815_40027}
11. MligTC455_37314 28 0.59 Mlig455_020645

Neo: -

Age: -

 CALM2 0.962 - - - - 0.962 - Mlig455_020645 {REF} {Length: 1006} {Pfam: EF-hand domain pair [PF13499.8, score=22.0]; EF-hand domain [PF14658.8, score=19.6]} {Human: ENSG00000143933, CALM2, calmodulin 2, [Score=65.9, Expect=3e-13]; ENSG00000198668, CALM1, calmodulin 1, [Score=65.9, Expect=3e-13]; ENSG00000160014, CALM3, calmodulin 3, [Score=65.9, Expect=3e-13]; ENSG00000178363, CALML3, calmodulin like 3, [Score=65.1, Expect=6e-13]} {Mouse: ENSMUSG00000001175, Calm1, calmodulin 1, [Score=66.6, Expect=3e-13]; ENSMUSG00000019370, Calm3, calmodulin 3, [Score=65.9, Expect=2e-13]; ENSMUSG00000036438, Calm2, calmodulin 2, [Score=65.9, Expect=2e-13]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=67.8, Expect=3e-14]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=67.8, Expect=2e-14]} {Smed: dd_Smed_v6_5491_0_1, dd_Smed_v6_5491_0_1, [Score=109, Expect=5e-30]} {RNA1310_33365} {RNA815_27013}
12. MligTC455_49600 15 0.31 Mlig455_011908

Neo: -

Age: -

 0.959 - - 0.959 - - - Mlig455_011908 {REF} {Length: 3679} {RNA1509_36260} {RNA1310_622.1} {RNA815_2514.1}
13. MligTC455_36686 47 0.97 Mlig455_056861

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_056861 {REF} {Length: 6184} {RNA1509_14690} {RNA1310_36097} {RNA815_32539}
14. MligTC455_18444 177 3.69 Mlig455_000582, Mlig455_030377, Mlig455_033966

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.638

 0.956 - - 0.956 - - -

Mlig455_000582 {REF} {Length: 2058} {Smed: dd_Smed_v6_6823_0_2, dd_Smed_v6_6823_0_2, [Score=198, Expect=4e-57]} {RNA1310_26881}

Mlig455_030377 {REF} {Length: 1982} {Smed: dd_Smed_v6_6823_0_1, dd_Smed_v6_6823_0_1, [Score=161, Expect=1e-43]} {RNA1310_26881}

Mlig455_033966 {REF} {Length: 1779} {Smed: dd_Smed_v6_6823_0_1, dd_Smed_v6_6823_0_1, [Score=184, Expect=2e-52]} {RNA1310_26881}
15. MligTC455_26038 13 0.26 Mlig455_026530

Neo: -

Age: Up-Down-Up

 0.956 - - - - 0.956 - Mlig455_026530 {REF} {Length: 9189} {Pfam: Transcription factor BRX N-terminal domain [PF13713.8, score=20.0]} {RNA1509_12133} {RNA1310_11930} {RNA815_40541}
16. MligTC455_13352 10 0.2 Mlig455_001562

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_001562 {REF} {Length: 2447} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=137.8]} {Smed: dd_Smed_v6_16274_0_1, dd_Smed_v6_16274_0_1, [Score=73.9, Expect=1e-13]} {RNA1310_72837}
17. MligTC455_03329 8 0.16 Mlig455_048958

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_048958 {REF} {Length: 1194} {Celegans: WBGene00009362, F33E2.6, [Score=68.6, Expect=2e-12]} {RNA1310_98587}
18. MligTC455_16439 147 3.07 Mlig455_026017, Mlig455_070446

Neo: -

Age: -

Region-enriched R2: 5.463/0.01159
Region-enriched R6: 4.166/0.03776

 SYN3 0.951 - - 0.951 - - -

Mlig455_026017 {REF} {Length: 1744} {Pfam: Synapsin, ATP binding domain [PF02750.16, score=157.5]} {Human: ENSG00000185666, SYN3, synapsin III, [Score=169, Expect=2e-47]; ENSG00000008056, SYN1, synapsin I, [Score=167, Expect=2e-46]; ENSG00000157152, SYN2, synapsin II, [Score=165, Expect=2e-49]} {Mouse: ENSMUSG00000037217, Syn1, synapsin I, [Score=169, Expect=2e-47]; ENSMUSG00000009394, Syn2, synapsin II, [Score=168, Expect=5e-48]; ENSMUSG00000059602, Syn3, synapsin III, [Score=168, Expect=1e-47]} {Dmel: FBgn0004575, Syn, Synapsin, [Score=169, Expect=3e-48]} {Celegans: WBGene00004913, snn-1, SyNapsiN; Synapsin, [Score=112, Expect=3e-28]} {Smed: dd_Smed_v6_3135_0_2, dd_Smed_v6_3135_0_2, [Score=167, Expect=3e-49]} {RNA1310_44259} {RNA815_33612}

Mlig455_070446 {REF} {Length: 1739} {Pfam: Synapsin, ATP binding domain [PF02750.16, score=159.2]} {Human: ENSG00000185666, SYN3, synapsin III, [Score=169, Expect=2e-47]; ENSG00000008056, SYN1, synapsin I, [Score=168, Expect=1e-46]; ENSG00000157152, SYN2, synapsin II, [Score=164, Expect=4e-49]} {Mouse: ENSMUSG00000037217, Syn1, synapsin I, [Score=170, Expect=1e-47]; ENSMUSG00000059602, Syn3, synapsin III, [Score=168, Expect=2e-47]; ENSMUSG00000009394, Syn2, synapsin II, [Score=166, Expect=2e-47]} {Dmel: FBgn0004575, Syn, Synapsin, [Score=175, Expect=2e-50]} {Celegans: WBGene00004913, snn-1, SyNapsiN; Synapsin, [Score=107, Expect=2e-26]} {Smed: dd_Smed_v6_3135_0_2, dd_Smed_v6_3135_0_2, [Score=173, Expect=3e-51]} {RNA1310_44259} {RNA815_33612}
19. MligTC455_13572 23 0.47 Mlig455_017474

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_017474 {REF} {Length: 2992} {RNA1310_13412} {RNA815_21127}
20. MligTC455_39894 42 0.88 Mlig455_045042

Neo: -

Age: Down-Down-Up

 0.95 - - 0.950 - - - Mlig455_045042 {REF} {Length: 1959} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=34.4]; 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=28.6]} {Smed: dd_Smed_v6_56224_0_1, dd_Smed_v6_56224_0_1, [Score=48.9, Expect=1e-06]} {RNA1310_63008}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA