Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
---|---|---|---|---|---|---|
MligTC455_38385 | 240 | 4.99 | Mlig455_002351 | Neo: - Age: - Region-enriched R4: 1.868/0.04052 |
PSMC3 | Mlig455_002351 {REF} {Length: 1725} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=141.9]; Proteasomal ATPase OB C-terminal domain [PF16450.7, score=51.8]; AAA+ lid domain [PF17862.3, score=46.4]; AAA ATPase domain [PF13191.8, score=28.6]; AAA domain (dynein-related subfamily) [PF07728.16, score=27.8]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=24.2]; AAA domain (Cdc48 subfamily) [PF07724.16, score=21.5]; AAA domain [PF13401.8, score=21.3]; Protein of unknown function (DUF815) [PF05673.15, score=18.5]} {Human: ENSG00000165916, PSMC3, proteasome 26S subunit, ATPase 3, [Score=600, Expect=0.0]} {Mouse: ENSMUSG00000002102, Psmc3, proteasome (prosome, macropain) 26S subunit, ATPase 3, [Score=600, Expect=0.0]} {Dmel: FBgn0028684, Rpt5, Regulatory particle triple-A ATPase 5, [Score=601, Expect=0.0]} {Celegans: WBGene00004505, rpt-5, Proteasome Regulatory Particle, ATPase-like, [Score=599, Expect=0.0]} {Smed: dd_Smed_v6_1855_0_1, dd_Smed_v6_1855_0_1, [Score=615, Expect=0.0]} {RNA1509_11369} {RNA1310_10892} {RNA815_3190} |
Region | logFC | logCPM | Pvalue | FDR | Specificity |
---|---|---|---|---|---|
RegionR1 | 1.477 | 2.989 | 0.35571 | 0.99880 | |
RegionR2 | -0.901 | 2.989 | 0.29026 | 0.67879 | |
RegionR3 | -0.506 | 2.989 | 0.46102 | 0.97052 | |
RegionR4 | 1.868 | 2.989 | 0.00575 | 0.04052 | |
RegionR5 | 1.153 | 2.989 | 0.02392 | 0.11011 | |
RegionR6 | -0.285 | 2.989 | 0.68894 | 1.00000 | |
RegionR7 | -0.616 | 2.989 | 0.54055 | 1.00000 | |
RegionR8 | -2.19 | 2.989 | 0.16486 | 0.73434 |
Region | logFC | logCPM | PValue | FDR | Specificity |
---|---|---|---|---|---|
RegenerationR1 | -6.431 | 2.989 | 0.18177 | 0.92312 | |
RegenerationR2 | -0.023 | 2.989 | 0.97282 | 1.00000 | |
RegenerationR3 | 0.428 | 2.989 | 0.55438 | 0.88602 | |
RegenerationR4 | -0.62 | 2.989 | 0.33708 | 0.76990 | |
RegenerationR5 | 0.247 | 2.989 | 0.67117 | 0.94139 | |
RegenerationR6 | 1.058 | 2.989 | 0.11355 | 0.41493 | |
RegenerationBL | 2.217 | 2.989 | 0.01025 | 0.10237 | |
RegenerationTP | 0.866 | 2.989 | 0.49056 | 0.89582 |
Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1. | MligTC455_38385 | 240 | 4.99 | Mlig455_002351 | Neo: - Age: - Region-enriched R4: 1.868/0.04052 |
PSMC3 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_002351 {REF} {Length: 1725} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=141.9]; Proteasomal ATPase OB C-terminal domain [PF16450.7, score=51.8]; AAA+ lid domain [PF17862.3, score=46.4]; AAA ATPase domain [PF13191.8, score=28.6]; AAA domain (dynein-related subfamily) [PF07728.16, score=27.8]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=24.2]; AAA domain (Cdc48 subfamily) [PF07724.16, score=21.5]; AAA domain [PF13401.8, score=21.3]; Protein of unknown function (DUF815) [PF05673.15, score=18.5]} {Human: ENSG00000165916, PSMC3, proteasome 26S subunit, ATPase 3, [Score=600, Expect=0.0]} {Mouse: ENSMUSG00000002102, Psmc3, proteasome (prosome, macropain) 26S subunit, ATPase 3, [Score=600, Expect=0.0]} {Dmel: FBgn0028684, Rpt5, Regulatory particle triple-A ATPase 5, [Score=601, Expect=0.0]} {Celegans: WBGene00004505, rpt-5, Proteasome Regulatory Particle, ATPase-like, [Score=599, Expect=0.0]} {Smed: dd_Smed_v6_1855_0_1, dd_Smed_v6_1855_0_1, [Score=615, Expect=0.0]} {RNA1509_11369} {RNA1310_10892} {RNA815_3190} |
2. | MligTC455_38386 | 276 | 5.74 | Mlig455_019773 | Neo: Int S/G2/M Age: - Region-enriched R4: 1.680/0.04858 |
PSMC3 | 5.861 | 0.992 | 0.983 | 0.983 | 0.987 | 0.934 | 0.982 | Mlig455_019773 {REF} {Length: 2330} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=141.5]; Proteasomal ATPase OB C-terminal domain [PF16450.7, score=53.2]; AAA+ lid domain [PF17862.3, score=46.2]; AAA ATPase domain [PF13191.8, score=27.8]; AAA domain (dynein-related subfamily) [PF07728.16, score=26.8]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=23.4]; AAA domain (Cdc48 subfamily) [PF07724.16, score=21.6]; AAA domain [PF13401.8, score=20.5]; Protein of unknown function (DUF815) [PF05673.15, score=18.1]} {Human: ENSG00000165916, PSMC3, proteasome 26S subunit, ATPase 3, [RH, Score=726, Expect=0.0]} {Mouse: ENSMUSG00000002102, Psmc3, proteasome (prosome, macropain) 26S subunit, ATPase 3, [RH, Score=727, Expect=0.0]} {Dmel: FBgn0028684, Rpt5, Regulatory particle triple-A ATPase 5, [RH, Score=726, Expect=0.0]} {Celegans: WBGene00004505, rpt-5, Proteasome Regulatory Particle, ATPase-like, [RH, Score=711, Expect=0.0]} {Smed: dd_Smed_v6_1855_0_1, dd_Smed_v6_1855_0_1, [RH, Score=741, Expect=0.0]} {RNA1509_11369} {RNA1310_10892, RNA1509_11369} {RNA1509_11369, RNA815_3190} |
3. | MligTC455_51495 | 245 | 5.11 | Mlig455_010119 | Neo: - Age: Down-Up-Down |
GPAT4 | 2.483 | - | - | - | 0.786 | 0.952 | 0.745 | Mlig455_010119 {REF} {Length: 2960} {TRANSSPLICED} {Pfam: Acyltransferase [PF01553.23, score=64.5]} {Human: ENSG00000158669, GPAT4, glycerol-3-phosphate acyltransferase 4, [RH, Score=419, Expect=2e-143]; ENSG00000138678, GPAT3, glycerol-3-phosphate acyltransferase 3, [RH, Score=414, Expect=5e-142]} {Mouse: ENSMUSG00000031545, Gpat4, glycerol-3-phosphate acyltransferase 4, [RH, Score=417, Expect=5e-143]; ENSMUSG00000029314, Gpat3, glycerol-3-phosphate acyltransferase 3, [RH, Score=415, Expect=3e-142]} {Dmel: FBgn0034971, CG3209, [RH, Score=421, Expect=2e-144]} {Celegans: WBGene00018657, acl-4, ACyLtransferase-like, [RH, Score=373, Expect=7e-124]} {Smed: dd_Smed_v6_2445_0_1, dd_Smed_v6_2445_0_1, [RH, Score=442, Expect=5e-153]} {RNA1509_23533, RNA1509_29142, RNA1509_4086} {RNA1310_9500.1, RNA1509_23533, RNA1509_29142, RNA1509_4086} {RNA1509_23533, RNA1509_29142, RNA1509_4086, RNA815_5264.1} |
4. | MligTC455_39846 | 11660 | 242.93 | Mlig455_004341, Mlig455_004353 | Neo: Int S/G2/M Age: logFC(26M/2M)=0.306 Region-enriched R4: 1.674/0.00000 Regeneration-enriched BL: 1.619 |
CCT7 | 1.741 | 0.787 | - | - | - | 0.954 | - | Mlig455_004341 {REF} {Length: 2438} {TRANSSPLICED} {Pfam: TCP-1/cpn60 chaperonin family [PF00118.26, score=505.0]} {Human: ENSG00000135624, CCT7, chaperonin containing TCP1 subunit 7, [RH, Score=821, Expect=0.0]} {Mouse: ENSMUSG00000030007, Cct7, chaperonin containing Tcp1, subunit 7 (eta), [RH, Score=822, Expect=0.0]} {Dmel: FBgn0037632, CCT7, Chaperonin containing TCP1 subunit 7, [RH, Score=769, Expect=0.0]} {Celegans: WBGene00020391, cct-7, Chaperonin Containing TCP-1, [RH, Score=701, Expect=0.0]} {Smed: dd_Smed_v6_847_0_1, dd_Smed_v6_847_0_1, [RH, Score=810, Expect=0.0]} {RNA1509_24098, RNA1509_34419, RNA1509_660, RNA1509_8695} {RNA1310_8189.1, RNA1509_24098, RNA1509_34419, RNA1509_660, RNA1509_8695} {RNA1509_24098, RNA1509_34419, RNA1509_660, RNA1509_8695, RNA815_2882.1} Mlig455_004353 {REF} {Length: 2426} {TRANSSPLICED} {Pfam: TCP-1/cpn60 chaperonin family [PF00118.26, score=505.0]} {Human: ENSG00000135624, CCT7, chaperonin containing TCP1 subunit 7, [RH, Score=821, Expect=0.0]} {Mouse: ENSMUSG00000030007, Cct7, chaperonin containing Tcp1, subunit 7 (eta), [RH, Score=822, Expect=0.0]} {Dmel: FBgn0037632, CCT7, Chaperonin containing TCP1 subunit 7, [RH, Score=769, Expect=0.0]} {Celegans: WBGene00020391, cct-7, Chaperonin Containing TCP-1, [RH, Score=701, Expect=0.0]} {Smed: dd_Smed_v6_847_0_1, dd_Smed_v6_847_0_1, [RH, Score=810, Expect=0.0]} {RNA1509_23051, RNA1509_8695} {RNA1310_8189.1, RNA1509_23051} {RNA1509_23051, RNA815_2882.1} |
5. | MligTC455_43898 | 418 | 8.71 | Mlig455_004960, Mlig455_019699 | Neo: - Age: - Region-enriched R4: 3.458/0.01813 |
1.721 | 0.771 | - | - | - | 0.950 | - | Mlig455_004960 {REF} {Length: 625} {RNA1310_61727} {RNA815_33442} Mlig455_019699 {REF} {Length: 555} {RNA1310_61727} {RNA815_33442} |
|
6. | MligTC455_52897 | 152 | 3.18 | Mlig455_024542 | Neo: Int S/G2/M Age: - Region-enriched R5: 1.837/0.04113 |
BARD1 | 1.721 | - | - | - | 0.754 | - | 0.967 | Mlig455_024542 {REF} {Length: 2496} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=86.2]; Ankyrin repeats (many copies) [PF13637.8, score=61.3]; Ankyrin repeat [PF00023.32, score=57.4]; Ankyrin repeat [PF13606.8, score=48.2]; Ankyrin repeats (many copies) [PF13857.8, score=46.6]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=39.0]; BRCT domain, a BRCA1 C-terminus domain [PF16589.7, score=32.1]; RING-type zinc-finger [PF13445.8, score=22.1]; Prokaryotic RING finger family 4 [PF14447.8, score=21.5]; Regulator of Ty1 transposition protein 107 BRCT domain [PF16770.7, score=21.1]; zinc finger of C3HC4-type, RING [PF15227.8, score=19.3]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=19.2]} {Human: ENSG00000138376, BARD1, BRCA1 associated RING domain 1, [RH, Score=218, Expect=2e-60]} {Mouse: ENSMUSG00000026196, Bard1, BRCA1 associated RING domain 1, [RH, Score=217, Expect=2e-60]} {Dmel: FBgn0036814, CG14073, [RH, Score=89.0, Expect=8e-18]} {Celegans: WBGene00001582, gfi-2, GEI-4 (Four) Interacting protein, [Score=71.6, Expect=6e-13]} {Smed: dd_Smed_v6_9297_0_1, dd_Smed_v6_9297_0_1, [Score=103, Expect=8e-23]} {RNA1509_6999} {RNA1310_8348} {RNA815_2740} |
7. | MligTC455_13192 | 671 | 13.98 | Mlig455_002614 | Neo: - Age: - Region-enriched R4: 1.373/0.02456 |
1.695 | - | - | - | 0.734 | 0.961 | - | Mlig455_002614 {REF} {Length: 3568} {RNA1509_30667, RNA1509_40798} {RNA1310_11136.1, RNA1509_30667, RNA1509_40798} {RNA1509_30667, RNA1509_40798, RNA815_5021.1} | |
8. | MligTC455_53477 | 156 | 3.25 | Mlig455_044952 | Neo: Int S/G2/M Age: Up-Down-Up Region-enriched R4: 3.164/0.01936 |
1.686 | - | 0.717 | - | 0.969 | - | - | Mlig455_044952 {REF} {Length: 558} {TRANSSPLICED} {RNA1509_31514} {RNA1310_26227} {RNA815_13760} | |
9. | MligTC455_27875 | 5216 | 108.66 | Mlig455_023366 | Neo: Int S/G2/M Age: Down-Down-Up, logFC(26M/2M)=0.674 Region-enriched R4: 1.113/0.00408 Regeneration-upregulated BL: 1.361 Regeneration-enriched BL: 1.361 |
DDX39B | 1.682 | - | - | - | - | 0.952 | 0.730 | Mlig455_023366 {REF} {Length: 1709} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=141.2]; Helicase conserved C-terminal domain [PF00271.33, score=92.8]; U3-containing 90S pre-ribosomal complex subunit [PF14617.8, score=33.4]; Type III restriction enzyme, res subunit [PF04851.17, score=29.8]} {Human: ENSG00000225859, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000235439, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000215425, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000225073, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000198563, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000229496, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000230624, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000123136, DDX39A, DExD-box helicase 39A, [RH, Score=699, Expect=0.0]} {Mouse: ENSMUSG00000019432, Ddx39b, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B, [RH, Score=716, Expect=0.0]; ENSMUSG00000005481, Ddx39, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, [RH, Score=703, Expect=0.0]} {Dmel: FBgn0014189, Hel25E, Helicase at 25E, [RH, Score=699, Expect=0.0]} {Celegans: WBGene00001840, hel-1, Spliceosome RNA helicase DDX39B homolog, [RH, Score=654, Expect=0.0]} {Smed: dd_Smed_v6_724_0_1, dd_Smed_v6_724_0_1, [RH, Score=713, Expect=0.0]} {RNA1509_632} {RNA1310_17749} {RNA815_6753} |
10. | MligTC455_08189 | 422 | 8.78 | Mlig455_055754 | Neo: - Age: - Region-enriched R5: 1.257/0.01328 |
0.962 | - | - | - | - | - | 0.962 | Mlig455_055754 {REF} {Length: 1152} {TRANSSPLICED} {RNA1509_44842} {RNA1310_31507.1, RNA1509_44842} {RNA1509_44842, RNA815_13475} | |
11. | MligTC455_48552 | 184 | 3.84 | Mlig455_022765 | Neo: - Age: logFC(26M/2M)=0.271 Region-enriched R5: 1.403/0.03486 |
GTF2H4 | 0.961 | - | - | - | - | - | 0.961 | Mlig455_022765 {REF} {Length: 2441} {TRANSSPLICED} {Pfam: Transcription factor Tfb2 [PF03849.16, score=310.2]; Transcription factor Tfb2 (p52) C-terminal domain [PF18307.3, score=76.3]} {Human: ENSG00000226384, GTF2H4, general transcription factor IIH subunit 4, [RH, Score=314, Expect=1e-101]; ENSG00000236895, GTF2H4, general transcription factor IIH subunit 4, [RH, Score=314, Expect=1e-101]; ENSG00000221974, GTF2H4, general transcription factor IIH subunit 4, [RH, Score=314, Expect=1e-101]; ENSG00000233149, GTF2H4, general transcription factor IIH subunit 4, [RH, Score=314, Expect=1e-101]; ENSG00000234370, GTF2H4, general transcription factor IIH subunit 4, [RH, Score=314, Expect=1e-101]; ENSG00000213780, GTF2H4, general transcription factor IIH subunit 4, [RH, Score=314, Expect=1e-101]} {Mouse: ENSMUSG00000001524, Gtf2h4, general transcription factor II H, polypeptide 4, [RH, Score=314, Expect=7e-102]} {Dmel: FBgn0261109, mrn, marionette, [RH, Score=306, Expect=1e-98]} {Celegans: WBGene00013529, Y73F8A.24, General transcription factor IIH subunit 4, [RH, Score=186, Expect=2e-53]} {Smed: dd_Smed_v6_11510_0_1, dd_Smed_v6_11510_0_1, [RH, Score=172, Expect=3e-48]} {RNA1509_23204, RNA1509_41750} {RNA1310_18685, RNA1509_23204, RNA1509_41750} {RNA1509_23204, RNA1509_41750, RNA815_72.1} |
12. | MligTC455_42090 | 625 | 13.03 | Mlig455_003814 | Neo: Int S/G2/M Age: Down-Down-Up Region-enriched R5: 1.603/0.00005 |
POLD2 | 0.959 | - | - | - | - | - | 0.959 | Mlig455_003814 {REF} {Length: 2103} {TRANSSPLICED} {Pfam: DNA polymerase alpha/epsilon subunit B [PF04042.18, score=147.9]; DNA polymerase delta subunit OB-fold domain [PF18018.3, score=132.3]} {Human: ENSG00000106628, POLD2, DNA polymerase delta 2, accessory subunit, [RH, Score=345, Expect=3e-114]} {Mouse: ENSMUSG00000020471, Pold2, polymerase (DNA directed), delta 2, regulatory subunit, [RH, Score=350, Expect=2e-116]} {Dmel: FBgn0027903, CG12018, [RH, Score=282, Expect=1e-90]} {Celegans: WBGene00008722, F12F6.7, Probable DNA polymerase delta small subunit, [RH, Score=161, Expect=2e-44]} {Smed: dd_Smed_v6_8399_0_1, dd_Smed_v6_8399_0_1, [RH, Score=244, Expect=8e-76]} {RNA1509_24914, RNA1509_35013} {RNA1310_19622.1, RNA1509_24914, RNA1509_35013} {RNA1509_24914, RNA1509_35013, RNA815_16200} |
13. | MligTC455_26122 | 143 | 2.98 | Mlig455_037008 | Neo: - Age: - |
GINS2 | 0.956 | - | - | - | - | 0.956 | - | Mlig455_037008 {REF} {Length: 1583} {TRANSSPLICED} {Pfam: GINS complex protein [PF05916.13, score=74.5]} {Human: ENSG00000131153, GINS2, GINS complex subunit 2, [RH, Score=184, Expect=9e-59]} {Mouse: ENSMUSG00000031821, Gins2, GINS complex subunit 2 (Psf2 homolog), [RH, Score=191, Expect=2e-61]} {Dmel: FBgn0261976, Psf2, [RH, Score=150, Expect=2e-45]} {Smed: dd_Smed_v6_15389_0_1, dd_Smed_v6_15389_0_1, [RH, Score=118, Expect=1e-33]} {RNA1509_45337, RNA1509_53194} {RNA1310_24811.1, RNA1509_45337, RNA1509_53194} {RNA1509_45337, RNA1509_53194, RNA815_15403.1} |
14. | MligTC455_13616 | 373 | 7.77 | Mlig455_063500 | Neo: - Age: Down-Down-Up |
SLC47A1 | 0.955 | - | - | - | - | 0.955 | - | Mlig455_063500 {REF} {Length: 1898} {Pfam: MatE [PF01554.20, score=96.5]} {Human: ENSG00000142494, SLC47A1, solute carrier family 47 member 1, [Score=143, Expect=7e-37]} {Mouse: ENSMUSG00000010122, Slc47a1, solute carrier family 47, member 1, [Score=144, Expect=2e-37]} {Smed: dd_Smed_v6_7241_0_1, dd_Smed_v6_7241_0_1, [Score=187, Expect=8e-53]} {RNA1509_33085} {RNA1310_12101} {RNA815_32639} |
15. | MligTC455_17124 | 484 | 10.08 | Mlig455_002400, Mlig455_060153 | Neo: Irradiation Age: Down-Up-Up Region-enriched R4: 2.442/0.02922 |
NFYC | 0.951 | - | - | - | - | - | 0.951 | Mlig455_002400 {REF} {Length: 2095} {Pfam: Histone-like transcription factor (CBF/NF-Y) and archaeal histone [PF00808.25, score=53.4]; Core histone H2A/H2B/H3/H4 [PF00125.26, score=39.9]} {Human: ENSG00000066136, NFYC, nuclear transcription factor Y subunit gamma, [Score=125, Expect=2e-32]} {Mouse: ENSMUSG00000032897, Nfyc, nuclear transcription factor-Y gamma, [Score=124, Expect=4e-33]} {Dmel: FBgn0029905, Nf-YC, Nuclear factor Y-box C, [Score=121, Expect=7e-31]} {Celegans: WBGene00017742, nfyc-1, Nuclear transcription factor Y subunit gamma, [RH, Score=104, Expect=9e-27]} {Smed: dd_Smed_v6_5610_0_1, dd_Smed_v6_5610_0_1, [Score=158, Expect=3e-46]} {RNA1509_28888} {RNA1310_21090.1, RNA1509_28888} {RNA1509_28888, RNA815_29133} Mlig455_060153 {REF} {Length: 2439} {Pfam: Histone-like transcription factor (CBF/NF-Y) and archaeal histone [PF00808.25, score=53.4]; Core histone H2A/H2B/H3/H4 [PF00125.26, score=39.9]} {Human: ENSG00000066136, NFYC, nuclear transcription factor Y subunit gamma, [Score=125, Expect=2e-32]} {Mouse: ENSMUSG00000032897, Nfyc, nuclear transcription factor-Y gamma, [Score=124, Expect=4e-33]} {Dmel: FBgn0029905, Nf-YC, Nuclear factor Y-box C, [Score=121, Expect=7e-31]} {Celegans: WBGene00017742, nfyc-1, Nuclear transcription factor Y subunit gamma, [RH, Score=104, Expect=9e-27]} {Smed: dd_Smed_v6_5610_0_1, dd_Smed_v6_5610_0_1, [Score=158, Expect=3e-46]} {RNA1509_28888} {RNA1310_21090.1} {RNA815_29133} |