M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_38612

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_38612 96 2.00 Mlig455_061544

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.500

 Mlig455_061544 {REF} {Length: 2271} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=23.2]; Ankyrin repeats (many copies) [PF13637.8, score=21.7]} {RNA1509_56131} {RNA1310_20466} {RNA815_16867}

Cumulative graph for MligTC455_38612

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.628 1.835 0.99966 1.00000
RegionR2 1.834 1.835 0.24732 0.62492
RegionR3 1.587 1.835 0.25120 0.79547
RegionR4 1.24 1.835 0.36779 0.69089
RegionR5 1.867 1.835 0.15214 0.40688
RegionR6 2.738 1.835 0.03739 0.36134
RegionR7 2.913 1.835 0.02426 0.29145
RegionR8 -5.551 1.835 0.99977 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.587 1.835 1.00000 1.00000
RegenerationR2 -0.73 1.835 0.47276 0.85874
RegenerationR3 -0.878 1.835 0.45563 0.83520
RegenerationR4 -1.067 1.835 0.44091 0.83750
RegenerationR5 -0.813 1.835 0.45393 0.83251
RegenerationR6 -1.379 1.835 0.21495 0.55883
RegenerationBL 0.758 1.835 0.57893 0.93107
RegenerationTP -0.134 1.835 0.80547 1.00000


Genes with expression patterns similar to MligTC455_38612

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_38612 96 2 Mlig455_061544

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.500

 4 - 1.000 1.000 1.000 1.000 - Mlig455_061544 {REF} {Length: 2271} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=23.2]; Ankyrin repeats (many copies) [PF13637.8, score=21.7]} {RNA1509_56131} {RNA1310_20466} {RNA815_16867}
2. MligTC455_14387 463 9.64 Mlig455_022195

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_022195 {REF} {Length: 2088} {NoTransDecoderORF} {RNA1509_22930} {RNA1310_28859} {RNA815_13691}
3. MligTC455_25918 510 10.62 Mlig455_006533, Mlig455_006699

Neo: -

Age: Down-Up-Down

 0.964 - - - - 0.964 -

Mlig455_006533 {REF} {Length: 3296} {Pfam: NHL repeat [PF01436.23, score=26.2]} {Dmel: FBgn0265356, tn, thin, [Score=52.0, Expect=1e-06]} {RNA1509_12380} {RNA1310_21840.1} {RNA815_17174}

Mlig455_006699 {REF} {Length: 658} {NoTransDecoderORF} {RNA1509_42918} {RNA1310_29427} {RNA815_19755}
4. MligTC455_15928 80 1.66 Mlig455_011178

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_011178 {REF} {Length: 656} {NoTransDecoderORF} {RNA1509_39291} {RNA1310_30004.1}
5. MligTC455_18743 847 17.64 Mlig455_048880, Mlig455_048889

Neo: -

Age: Down-Up-Down

Region-enriched R4: 1.254/0.03765

 TMEM86A 0.956 - - - - 0.956 -

Mlig455_048880 {REF} {Length: 2206} {TRANSSPLICED} {Pfam: YhhN family [PF07947.16, score=126.3]} {Human: ENSG00000151117, TMEM86A, transmembrane protein 86A, [Score=133, Expect=6e-38]} {Mouse: ENSMUSG00000010307, Tmem86a, transmembrane protein 86A, [Score=125, Expect=6e-35]} {Dmel: FBgn0039681, CG7582, [Score=102, Expect=5e-26]} {Smed: dd_Smed_v6_5848_0_1, dd_Smed_v6_5848_0_1, [RH, Score=102, Expect=2e-26]} {RNA1509_53906} {RNA1310_7199.1} {RNA815_6532}

Mlig455_048889 {REF} {Length: 2206} {TRANSSPLICED} {Pfam: YhhN family [PF07947.16, score=126.3]} {Human: ENSG00000151117, TMEM86A, transmembrane protein 86A, [Score=133, Expect=6e-38]} {Mouse: ENSMUSG00000010307, Tmem86a, transmembrane protein 86A, [Score=125, Expect=6e-35]} {Dmel: FBgn0039681, CG7582, [Score=102, Expect=5e-26]} {Smed: dd_Smed_v6_5848_0_1, dd_Smed_v6_5848_0_1, [RH, Score=102, Expect=2e-26]} {RNA1509_21591, RNA1509_53906} {RNA1310_7199.1, RNA1509_21591, RNA1509_53906} {RNA1509_21591, RNA1509_53906, RNA815_6532}
6. MligTC455_46587 295 6.15 Mlig455_010520

Neo: -

Age: logFC(26M/2M)=-0.575

 0.956 - - - - 0.956 - Mlig455_010520 {REF} {Length: 2372} {RNA1509_53624} {RNA1310_26047.1, RNA1509_53624} {RNA1509_53624, RNA815_690.1}
7. MligTC455_38554 131 2.72 Mlig455_038381

Neo: -

Age: logFC(26M/2M)=-0.458

 DCHS2 0.955 - - - - 0.955 - Mlig455_038381 {REF} {Length: 9031} {Pfam: Cadherin domain [PF00028.19, score=442.3]; Long Rib domain [PF18957.2, score=30.3]} {Human: ENSG00000197410, DCHS2, dachsous cadherin-related 2, [Score=387, Expect=1e-107]; ENSG00000166341, DCHS1, dachsous cadherin-related 1, [Score=387, Expect=2e-107]; ENSG00000284227, DCHS2, dachsous cadherin-related 2, [Score=387, Expect=1e-107]} {Mouse: ENSMUSG00000102692, Dchs2, dachsous cadherin related 2, [Score=400, Expect=1e-111]} {Dmel: FBgn0284247, ds, dachsous, [Score=341, Expect=1e-93]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=206, Expect=1e-52]} {Smed: dd_Smed_v6_11744_0_1, dd_Smed_v6_11744_0_1, [Score=209, Expect=1e-53]} {RNA1509_7140} {RNA1310_3117} {RNA815_267}
8. MligTC455_30581 205 4.27 Mlig455_039964

Neo: -

Age: -

 GABPB1 0.954 - - - - 0.954 - Mlig455_039964 {REF} {Length: 2065} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=37.8]; Ankyrin repeat [PF13606.8, score=34.0]; Ankyrin repeats (many copies) [PF13637.8, score=34.0]; Ankyrin repeats (many copies) [PF13857.8, score=33.3]; Ankyrin repeat [PF00023.32, score=25.0]} {Human: ENSG00000104064, GABPB1, GA binding protein transcription factor subunit beta 1, [Score=57.0, Expect=8e-10]} {Mouse: ENSMUSG00000027361, Gabpb1, GA repeat binding protein, beta 1, [Score=55.8, Expect=9e-10]; ENSMUSG00000038766, Gabpb2, GA repeat binding protein, beta 2, [Score=54.3, Expect=1e-09]} {Dmel: FBgn0086898, dgo, diego, [Score=50.1, Expect=1e-07]} {Smed: dd_Smed_v6_10116_0_2, dd_Smed_v6_10116_0_2, [Score=45.8, Expect=2e-06]} {RNA1509_27731} {RNA1310_10050} {RNA815_9449.1}
9. MligTC455_16449 318 6.62 Mlig455_057658

Neo: -

Age: logFC(26M/2M)=3.580

Regeneration-enriched BL: 5.825
Regeneration-enriched R6: 5.147
Regeneration-enriched R5: 5.054
Regeneration-enriched R4: 4.256
Regeneration-enriched R2: 3.330

 HMCN2 0.952 - - - - 0.952 - Mlig455_057658 {REF} {Length: 2853} {Pfam: von Willebrand factor type A domain [PF13519.8, score=86.9]; von Willebrand factor type A domain [PF00092.30, score=56.5]; DNA gyrase B [PF00204.27, score=20.5]} {Human: ENSG00000148357, HMCN2, hemicentin 2, [Score=81.6, Expect=4e-15]} {Mouse: ENSMUSG00000066842, Hmcn1, hemicentin 1, [Score=76.3, Expect=1e-13]; ENSMUSG00000055632, Hmcn2, hemicentin 2, [Score=75.5, Expect=2e-13]} {Celegans: WBGene00001863, him-4, Hemicentin; High Incidence of Males (Increased X chromosome loss), [Score=88.2, Expect=1e-17]} {Smed: dd_Smed_v6_1161_0_1, dd_Smed_v6_1161_0_1, [Score=80.5, Expect=3e-15]} {RNA1509_12564, RNA1509_46765} {RNA1310_5647.1, RNA1509_12564, RNA1509_46765} {RNA1509_12564, RNA1509_46765, RNA815_1802.1}
10. MligTC455_24592 294 6.12 Mlig455_046239

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_046239 {REF} {Length: 1673} {TRANSSPLICED} {RNA1509_29648} {RNA1310_15404} {RNA815_13203.1}
11. MligTC455_43107 182 3.78 Mlig455_023855

Neo: -

Age: -

 TSPAN33 0.952 - - - - 0.952 - Mlig455_023855 {REF} {Length: 2181} {Pfam: Tetraspanin family [PF00335.22, score=99.9]} {Human: ENSG00000158457, TSPAN33, tetraspanin 33, [Score=90.1, Expect=3e-20]} {Mouse: ENSMUSG00000001763, Tspan33, tetraspanin 33, [Score=91.7, Expect=6e-21]} {Celegans: WBGene00006640, tsp-14, Tetraspanin, [Score=68.2, Expect=1e-12]} {RNA1509_53496} {RNA1310_26143} {RNA815_9768}
12. MligTC455_15172 200 4.16 Mlig455_016665

Neo: -

Age: Up-Down-Down

Region-enriched R4: 3.089/0.00591
Region-enriched R5: 2.401/0.00180

 GAB3 0.951 - - - - 0.951 - Mlig455_016665 {REF} {Length: 2790} {TRANSSPLICED} {Pfam: PH domain [PF00169.31, score=44.1]} {Human: ENSG00000160219, GAB3, GRB2 associated binding protein 3, [RH, Score=59.7, Expect=1e-08]; ENSG00000109458, GAB1, GRB2 associated binding protein 1, [RH, Score=58.9, Expect=2e-08]} {Mouse: ENSMUSG00000032750, Gab3, growth factor receptor bound protein 2-associated protein 3, [RH, Score=55.1, Expect=2e-07]} {Dmel: FBgn0016794, dos, daughter of sevenless, [RH, Score=56.2, Expect=7e-08]} {Smed: dd_Smed_v6_8815_0_1, dd_Smed_v6_8815_0_1, [RH, Score=50.8, Expect=2e-06]} {RNA1509_34059} {RNA1310_17916.1} {RNA815_24797}
13. MligTC455_49194 442 9.22 Mlig455_022569

Neo: -

Age: Down-Up-Down

 0.951 - - - - 0.951 - Mlig455_022569 {REF} {Length: 1947} {TRANSSPLICED} {RNA1509_18442, RNA1509_34885} {RNA1310_8277, RNA1509_34885} {RNA1509_34885, RNA815_6103}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA