M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_46587

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_46587 295 6.15 Mlig455_010520

Neo: -

Age: logFC(26M/2M)=-0.575

 Mlig455_010520 {REF} {Length: 2372} {RNA1509_53624} {RNA1310_26047.1, RNA1509_53624} {RNA1509_53624, RNA815_690.1}

Cumulative graph for MligTC455_46587

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.328 3.099 0.49533 1.00000
RegionR2 0.615 3.099 0.39160 0.78625
RegionR3 0.337 3.099 0.55041 1.00000
RegionR4 0.408 3.099 0.55877 0.87862
RegionR5 -0.584 3.099 0.33369 0.67949
RegionR6 -0.316 3.099 0.61316 1.00000
RegionR7 0.119 3.099 0.86821 1.00000
RegionR8 0.75 3.099 0.33868 0.97260

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.015 3.099 0.52925 1.00000
RegenerationR2 0.037 3.099 0.94397 1.00000
RegenerationR3 -1.055 3.099 0.12638 0.54758
RegenerationR4 -0.086 3.099 0.90305 1.00000
RegenerationR5 -0.207 3.099 0.75846 0.97487
RegenerationR6 0.771 3.099 0.26730 0.61720
RegenerationBL 0.499 3.099 0.49853 0.86363
RegenerationTP -0.281 3.099 0.73112 1.00000


Genes with expression patterns similar to MligTC455_46587

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_46587 295 6.15 Mlig455_010520

Neo: -

Age: logFC(26M/2M)=-0.575

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_010520 {REF} {Length: 2372} {RNA1509_53624} {RNA1310_26047.1, RNA1509_53624} {RNA1509_53624, RNA815_690.1}
2. MligTC455_46588 627 13.06 Mlig455_061815, Mlig455_061852

Neo: -

Age: Up-Down-Down

 2.38 - - 0.701 0.701 0.978 -

Mlig455_061815 {REF} {Length: 1256} {RNA1509_53624} {RNA1310_26047.1} {RNA815_690.1}

Mlig455_061852 {REF} {Length: 2071} {RNA1509_53624} {RNA1310_26047.1} {RNA815_690.1}
3. MligTC455_02517 94 1.97 Mlig455_053877

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.852

Region-enriched R4: 4.874/0.00145

 1.848 - - - 0.877 0.971 - Mlig455_053877 {REF} {Length: 3912} {RNA1509_29842, RNA1509_40701, RNA1509_48680} {RNA1310_31370.1, RNA1509_29842, RNA1509_40701, RNA1509_48680} {RNA1509_29842, RNA1509_40701, RNA1509_48680, RNA815_11432}
4. MligTC455_53321 59 1.24 Mlig455_046286

Neo: -

Age: -

Region-enriched R4: 6.404/0.01336

 1.844 - - - 0.877 0.967 - Mlig455_046286 {REF} {Length: 1085} {RNA1509_49086} {RNA1310_87385, RNA1509_49086}
5. MligTC455_41986 57 1.19 Mlig455_027306

Neo: -

Age: -

 TCF23 1.806 - - - 0.852 0.954 - Mlig455_027306 {REF} {Length: 1046} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=41.9]} {Human: ENSG00000163792, TCF23, transcription factor 23, [RH, Score=86.3, Expect=5e-22]} {Mouse: ENSMUSG00000006642, Tcf23, transcription factor 23, [RH, Score=84.3, Expect=2e-21]} {Dmel: FBgn0011277, HLH4C, Helix loop helix protein 4C, [Score=48.1, Expect=4e-08]} {Celegans: WBGene00001959, hlh-15, Helix Loop Helix, [Score=45.8, Expect=7e-08]} {Smed: dd_Smed_v6_16070_0_1, dd_Smed_v6_16070_0_1, [Score=52.4, Expect=9e-10]} {RNA1310_4676} {RNA815_18327.1}
6. MligTC455_51066 526 10.97 Mlig455_044665, Mlig455_044724

Neo: -

Age: Down-Up-Down

Region-enriched R8: 5.381/0.00000

 1.747 - - - 0.769 0.978 -

Mlig455_044665 {REF} {Length: 1268} {Smed: dd_Smed_v6_7581_0_1, dd_Smed_v6_7581_0_1, [Score=148, Expect=3e-41]} {RNA1310_47069.2} {RNA815_30975}

Mlig455_044724 {REF} {Length: 1327} {Smed: dd_Smed_v6_7581_0_1, dd_Smed_v6_7581_0_1, [Score=148, Expect=3e-41]} {RNA1310_47069.2} {RNA815_30975}
7. MligTC455_13723 13 0.28 Mlig455_041223

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_041223 {REF} {Length: 2128} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=45.3]; 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=32.9]} {Smed: dd_Smed_v6_14726_0_1, dd_Smed_v6_14726_0_1, [Score=85.9, Expect=1e-18]} {RNA1310_95524.1} {RNA815_48018}
8. MligTC455_37744 102 2.13 Mlig455_060048

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.195

Region-enriched R4: 3.222/0.03182

 0.975 - - - - 0.975 - Mlig455_060048 {REF} {Length: 3100} {RNA1509_20857} {RNA1310_14135} {RNA815_7399.1}
9. MligTC455_17303 318 6.62 Mlig455_068164

Neo: -

Age: -

 TDG 0.974 - - - - 0.974 - Mlig455_068164 {REF} {Length: 7284} {TRANSSPLICED} {Pfam: Uracil DNA glycosylase superfamily [PF03167.21, score=132.9]} {Human: ENSG00000139372, TDG, thymine DNA glycosylase, [RH, Score=206, Expect=2e-57]} {Mouse: ENSMUSG00000034674, Tdg, thymine DNA glycosylase, [RH, Score=208, Expect=2e-58]} {Dmel: FBgn0026869, Thd1, [Score=253, Expect=7e-68]} {Smed: dd_Smed_v6_9424_0_1, dd_Smed_v6_9424_0_1, [Score=324, Expect=2e-97]} {RNA1509_28066} {RNA1310_15535} {RNA815_10224}
10. MligTC455_14579 38 0.8 Mlig455_035097

Neo: -

Age: -

 GNAO1 0.968 - - - - 0.968 - Mlig455_035097 {REF} {Length: 430} {TRANSSPLICED} {Human: ENSG00000087258, GNAO1, G protein subunit alpha o1, [Score=52.8, Expect=8e-11]} {Mouse: ENSMUSG00000031748, Gnao1, guanine nucleotide binding protein, alpha O, [Score=52.8, Expect=7e-10]} {Dmel: FBgn0001122, Galphao, G protein alpha o subunit, [Score=52.4, Expect=6e-10]} {Celegans: WBGene00001648, goa-1, Guanine nucleotide-binding protein G(o) subunit alpha, [Score=51.2, Expect=1e-09]} {Smed: dd_Smed_v6_1656_0_3, dd_Smed_v6_1656_0_3, [Score=48.9, Expect=6e-09]} {RNA1509_46579} {RNA1310_64789} {RNA815_60854}
11. MligTC455_28517 169 3.52 Mlig455_032503

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_032503 {REF} {Length: 728} {NoTransDecoderORF} {RNA1310_54604.1} {RNA815_39231}
12. MligTC455_47361 1348 28.08 Mlig455_010891, Mlig455_033205

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.649

 ECI1 0.957 - - - - 0.957 -

Mlig455_010891 {REF} {Length: 1222} {TRANSSPLICED} {Pfam: Enoyl-CoA hydratase/isomerase [PF00378.22, score=106.3]; Enoyl-CoA hydratase/isomerase [PF16113.7, score=29.3]} {Human: ENSG00000167969, ECI1, enoyl-CoA delta isomerase 1, [Score=108, Expect=2e-27]} {Mouse: ENSMUSG00000024132, Eci1, enoyl-Coenzyme A delta isomerase 1, [Score=111, Expect=2e-28]} {Dmel: FBgn0032160, CG4598, [Score=107, Expect=4e-27]} {Celegans: WBGene00001154, ech-5, Enoyl-CoA Hydratase, [Score=67.0, Expect=1e-12]} {Smed: dd_Smed_v6_3553_0_1, dd_Smed_v6_3553_0_1, [Score=74.3, Expect=3e-15]} {RNA1509_13854} {RNA1310_28320.1, RNA1509_13854} {RNA1509_13854, RNA815_17367}

Mlig455_033205 {REF} {Length: 2143} {TRANSSPLICED} {Pfam: Enoyl-CoA hydratase/isomerase [PF00378.22, score=81.1]; Enoyl-CoA hydratase/isomerase [PF16113.7, score=19.9]} {Human: ENSG00000167969, ECI1, enoyl-CoA delta isomerase 1, [Score=67.4, Expect=6e-12]} {Mouse: ENSMUSG00000024132, Eci1, enoyl-Coenzyme A delta isomerase 1, [Score=67.0, Expect=6e-12]} {Dmel: FBgn0032161, CG4594, [Score=68.2, Expect=3e-12]} {RNA1509_13854} {RNA1310_19425.1} {RNA815_17367}
13. MligTC455_50935 553 11.53 Mlig455_037656, Mlig455_037661, Mlig455_037766

Neo: -

Age: Down-Up-Up

 0.957 - - - - 0.957 -

Mlig455_037656 {REF} {Length: 2489} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=150.9]} {Celegans: WBGene00006748, unc-8, Degenerin unc-8, [Score=48.9, Expect=1e-05]} {Smed: dd_Smed_v6_12878_0_1, dd_Smed_v6_12878_0_1, [Score=71.6, Expect=8e-13]} {RNA1509_12261, RNA1509_57275} {RNA1310_8718.2, RNA1509_12261, RNA1509_57275} {RNA1509_12261, RNA1509_57275, RNA815_16423}

Mlig455_037661 {REF} {Length: 2450} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=151.7]} {Celegans: WBGene00006748, unc-8, Degenerin unc-8, [Score=48.9, Expect=1e-05]} {Smed: dd_Smed_v6_12878_0_1, dd_Smed_v6_12878_0_1, [Score=71.6, Expect=8e-13]} {RNA1509_12261} {RNA1310_8718.2} {RNA815_16423}

Mlig455_037766 {REF} {Length: 2439} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=150.9]} {Celegans: WBGene00006748, unc-8, Degenerin unc-8, [Score=48.9, Expect=1e-05]} {Smed: dd_Smed_v6_12878_0_1, dd_Smed_v6_12878_0_1, [Score=71.6, Expect=8e-13]} {RNA1509_12261} {RNA1310_8718.2} {RNA815_16423}
14. MligTC455_30205 35 0.74 Mlig455_033583, Mlig455_062880, Mlig455_067068

Neo: -

Age: -

 PLB1 0.956 - - - - 0.956 -

Mlig455_033583 {REF} {Length: 1560} {Pfam: GDSL-like Lipase/Acylhydrolase [PF00657.24, score=95.7]; GDSL-like Lipase/Acylhydrolase family [PF13472.8, score=47.5]} {Human: ENSG00000163803, PLB1, phospholipase B1, [RH, Score=312, Expect=9e-95]} {Mouse: ENSMUSG00000029134, Plb1, phospholipase B1, [RH, Score=308, Expect=2e-93]} {Dmel: FBgn0036939, CG7365, [RH, Score=242, Expect=1e-75]} {Celegans: WBGene00008621, F09C8.1, [RH, Score=240, Expect=8e-76]} {Smed: dd_Smed_v6_2690_0_1, dd_Smed_v6_2690_0_1, [Score=250, Expect=3e-79]} {RNA1509_547} {RNA1310_27631} {RNA815_6261.2}

Mlig455_062880 {REF} {Length: 2503} {Pfam: GDSL-like Lipase/Acylhydrolase [PF00657.24, score=94.1]; GDSL-like Lipase/Acylhydrolase family [PF13472.8, score=47.2]} {Human: ENSG00000163803, PLB1, phospholipase B1, [Score=301, Expect=3e-96]} {Mouse: ENSMUSG00000029134, Plb1, phospholipase B1, [RH, Score=300, Expect=1e-89]} {Dmel: FBgn0036939, CG7365, [Score=228, Expect=1e-69]} {Celegans: WBGene00008621, F09C8.1, [Score=229, Expect=1e-70]} {Smed: dd_Smed_v6_2690_0_1, dd_Smed_v6_2690_0_1, [Score=240, Expect=2e-74]} {RNA1509_186} {RNA1310_27631} {RNA815_6261.2}

Mlig455_067068 {REF} {Length: 1454} {Pfam: GDSL-like Lipase/Acylhydrolase [PF00657.24, score=94.1]; GDSL-like Lipase/Acylhydrolase family [PF13472.8, score=47.2]} {Human: ENSG00000163803, PLB1, phospholipase B1, [Score=301, Expect=3e-96]} {Mouse: ENSMUSG00000029134, Plb1, phospholipase B1, [RH, Score=300, Expect=1e-89]} {Dmel: FBgn0036939, CG7365, [Score=228, Expect=1e-69]} {Celegans: WBGene00008621, F09C8.1, [Score=229, Expect=1e-70]} {Smed: dd_Smed_v6_2690_0_1, dd_Smed_v6_2690_0_1, [Score=240, Expect=2e-74]} {RNA1509_186} {RNA1310_27631} {RNA815_6261.2}
15. MligTC455_38612 96 2 Mlig455_061544

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.500

 0.956 - - - - 0.956 - Mlig455_061544 {REF} {Length: 2271} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=23.2]; Ankyrin repeats (many copies) [PF13637.8, score=21.7]} {RNA1509_56131} {RNA1310_20466} {RNA815_16867}
16. MligTC455_37697 237 4.94 Mlig455_001651

Neo: -

Age: -

 KMT5B 0.954 - - - - 0.954 - Mlig455_001651 {REF} {Length: 2806} {TRANSSPLICED} {Pfam: SET domain [PF00856.30, score=35.3]} {Human: ENSG00000110066, KMT5B, lysine methyltransferase 5B, [RH, Score=239, Expect=2e-74]} {Mouse: ENSMUSG00000045098, Kmt5b, lysine methyltransferase 5B, [RH, Score=244, Expect=2e-72]} {Dmel: FBgn0025639, Hmt4-20, Histone methyltransferase 4-20, [RH, Score=248, Expect=1e-72]} {Celegans: WBGene00016313, set-4, Histone-lysine N-methyltransferase Suv4-20, [RH, Score=191, Expect=2e-57]} {Smed: dd_Smed_v6_11927_0_1, dd_Smed_v6_11927_0_1, [Score=224, Expect=3e-66]} {RNA1509_22106} {RNA1310_24481} {RNA815_15745}
17. MligTC455_24843 412 8.59 Mlig455_014713

Neo: -

Age: -

Region-enriched R8: 3.552/0.00000

 TRPM1 0.953 - - - - 0.953 - Mlig455_014713 {REF} {Length: 8336} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=172.4]; Ankyrin repeats (many copies) [PF13637.8, score=126.4]; Ankyrin repeats (many copies) [PF13857.8, score=55.0]; Ankyrin repeat [PF13606.8, score=47.8]; Domain of unknown function (DUF4158) [PF13700.8, score=41.7]; Ankyrin repeat [PF00023.32, score=35.7]; RlmM ferredoxin-like domain [PF18125.3, score=24.8]; HMGL-like [PF00682.21, score=22.8]; Ion transport protein [PF00520.33, score=20.3]} {Human: ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=90.9, Expect=2e-17]; ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=90.9, Expect=2e-17]; ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=88.2, Expect=1e-16]} {Mouse: ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=91.7, Expect=8e-18]; ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=90.1, Expect=3e-17]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=73.2, Expect=2e-12]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=65.5, Expect=4e-10]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [Score=116, Expect=5e-26]} {RNA1509_6015} {RNA1310_1769} {RNA815_7984}
18. MligTC455_49612 183 3.81 Mlig455_022034

Neo: Int S/G2/M

Age: -

 YY1 0.952 - - - - 0.952 - Mlig455_022034 {REF} {Length: 2220} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=55.1]; Zinc-finger double domain [PF13465.8, score=53.9]; C2H2-type zinc finger [PF13894.8, score=43.6]; C2H2-type zinc finger [PF13912.8, score=22.8]; FOXP coiled-coil domain [PF16159.7, score=19.0]} {Human: ENSG00000100811, YY1, YY1 transcription factor, [RH, Score=157, Expect=2e-46]} {Mouse: ENSMUSG00000021264, Yy1, YY1 transcription factor, [RH, Score=157, Expect=2e-46]; ENSMUSG00000046873, Mbtps2, membrane-bound transcription factor peptidase, site 2, [RH, Score=152, Expect=9e-45]; ENSMUSG00000091736, Yy2, Yy2 transcription factor, [RH, Score=152, Expect=9e-45]} {Dmel: FBgn0002521, pho, pleiohomeotic, [RH, Score=157, Expect=1e-45]} {Celegans: WBGene00003015, lin-29, Transcription factor, [Score=84.3, Expect=8e-20]} {Smed: dd_Smed_v6_10092_0_1, dd_Smed_v6_10092_0_1, [RH, Score=152, Expect=3e-44]} {RNA1509_14200} {RNA1310_37487} {RNA815_5365}
19. MligTC455_56997 40 0.84 Mlig455_017357

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_017357 {REF} {Length: 266} {NoTransDecoderORF}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA