TomoSeq data search

Data search

Results for MligTC455_39871

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_39871

1444

30.09

Mlig455_029714, Mlig455_034857

Neo: -

Age: -

STAU2

Mlig455_029714 {REF} {Length: 2011} {Pfam: Staufen C-terminal domain [PF16482.7, score=27.1]; Double-stranded RNA binding motif [PF00035.28, score=19.5]} {RNA1509_53015} {RNA1310_4047.1} {RNA815_17208.1}

Mlig455_034857 {REF} {Length: 3387} {TRANSSPLICED} {Pfam: Double-stranded RNA binding motif [PF00035.28, score=122.6]; Staufen C-terminal domain [PF16482.7, score=44.8]; double strand RNA binding domain from DEAD END PROTEIN 1 [PF14709.9, score=27.2]} {Human: ENSG00000040341, STAU2, staufen double-stranded RNA binding protein 2, [RH, Score=199, Expect=2e-54]} {Mouse: ENSMUSG00000025920, Stau2, staufen double-stranded RNA binding protein 2, [RH, Score=194, Expect=3e-53]} {Dmel: FBgn0003520, stau, staufen, [RH, Score=102, Expect=7e-22]} {Celegans: WBGene00018857, stau-1, STAUfen (DsRNA binding protein) homolog, [RH, Score=148, Expect=9e-37]} {RNA1509_18826, RNA1509_38637, RNA1509_42637, RNA1509_53015, RNA1509_55172, RNA1509_58024} {RNA1310_4047.1, RNA1509_18826, RNA1509_38637, RNA1509_42637, RNA1509_53015, RNA1509_55172, RNA1509_58024} {RNA1509_18826, RNA1509_38637, RNA1509_42637, RNA1509_53015, RNA1509_55172, RNA1509_58024, RNA815_4500}

Cumulative graph for MligTC455_39871

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.022	5.204	0.20294	0.84142
RegionR2	0.498	5.204	0.15798	0.49717
RegionR3	0.292	5.204	0.30423	0.84579
RegionR4	0.273	5.204	0.39440	0.72106
RegionR5	0.174	5.204	0.50349	0.86685
RegionR6	0.196	5.204	0.49683	1.00000
RegionR7	0.068	5.204	0.85094	1.00000
RegionR8	-0.479	5.204	0.32227	0.95610

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-7.235	5.204	0.05826	0.72355
RegenerationR2	0.513	5.204	0.07808	0.45130
RegenerationR3	0.231	5.204	0.47387	0.84646
RegenerationR4	-0.069	5.204	0.83466	0.99894
RegenerationR5	0.444	5.204	0.13368	0.54174
RegenerationR6	0.268	5.204	0.41007	0.74394
RegenerationBL	0.307	5.204	0.42211	0.79025
RegenerationTP	0.449	5.204	0.28827	0.73402

Genes with expression patterns similar to MligTC455_39871

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_39871	1444	30.09	Mlig455_029714, Mlig455_034857	Neo: - Age: -	STAU2	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_029714 {REF} {Length: 2011} {Pfam: Staufen C-terminal domain [PF16482.7, score=27.1]; Double-stranded RNA binding motif [PF00035.28, score=19.5]} {RNA1509_53015} {RNA1310_4047.1} {RNA815_17208.1} Mlig455_034857 {REF} {Length: 3387} {TRANSSPLICED} {Pfam: Double-stranded RNA binding motif [PF00035.28, score=122.6]; Staufen C-terminal domain [PF16482.7, score=44.8]; double strand RNA binding domain from DEAD END PROTEIN 1 [PF14709.9, score=27.2]} {Human: ENSG00000040341, STAU2, staufen double-stranded RNA binding protein 2, [RH, Score=199, Expect=2e-54]} {Mouse: ENSMUSG00000025920, Stau2, staufen double-stranded RNA binding protein 2, [RH, Score=194, Expect=3e-53]} {Dmel: FBgn0003520, stau, staufen, [RH, Score=102, Expect=7e-22]} {Celegans: WBGene00018857, stau-1, STAUfen (DsRNA binding protein) homolog, [RH, Score=148, Expect=9e-37]} {RNA1509_18826, RNA1509_38637, RNA1509_42637, RNA1509_53015, RNA1509_55172, RNA1509_58024} {RNA1310_4047.1, RNA1509_18826, RNA1509_38637, RNA1509_42637, RNA1509_53015, RNA1509_55172, RNA1509_58024} {RNA1509_18826, RNA1509_38637, RNA1509_42637, RNA1509_53015, RNA1509_55172, RNA1509_58024, RNA815_4500}
2.	MligTC455_25368	399	8.31	Mlig455_066596	Neo: - Age: -	PCNX1	2.495	-	-	-	0.774	0.765	0.956	Mlig455_066596 {REF} {Length: 7559} {TRANSSPLICED} {Pfam: Pecanex protein (C-terminus) [PF05041.17, score=276.2]} {Human: ENSG00000100731, PCNX1, pecanex 1, [RH, Score=896, Expect=0.0]} {Mouse: ENSMUSG00000021140, Pcnx, pecanex homolog, [RH, Score=906, Expect=0.0]} {Dmel: FBgn0003048, pcx, pecanex, [RH, Score=523, Expect=2e-150]} {Celegans: WBGene00015237, B0511.12, [RH, Score=700, Expect=0.0]} {Smed: dd_Smed_v6_4696_0_1, dd_Smed_v6_4696_0_1, [RH, Score=734, Expect=0.0]} {RNA1509_3296, RNA1509_36439, RNA1509_54111} {RNA1310_315.1, RNA1509_3296, RNA1509_36439, RNA1509_54111} {RNA1509_3296, RNA1509_36439, RNA1509_54111, RNA815_192}
3.	MligTC455_39337	938	19.53	Mlig455_039998	Neo: - Age: logFC(26M/2M)=-0.274	NR1I2	1.794	-	-	-	0.840	-	0.954	Mlig455_039998 {REF} {Length: 6281} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=65.3]} {Human: ENSG00000144852, NR1I2, nuclear receptor subfamily 1 group I member 2, [Score=80.5, Expect=2e-15]; ENSG00000143257, NR1I3, nuclear receptor subfamily 1 group I member 3, [Score=79.0, Expect=2e-15]; ENSG00000196482, ESRRG, estrogen related receptor gamma, [Score=77.0, Expect=2e-14]; ENSG00000173153, ESRRA, estrogen related receptor alpha, [Score=77.0, Expect=2e-14]} {Mouse: ENSMUSG00000005677, Nr1i3, nuclear receptor subfamily 1, group I, member 3, [Score=82.4, Expect=1e-16]} {Dmel: FBgn0015240, Hr96, Hormone receptor-like in 96, [Score=85.1, Expect=5e-17]} {Celegans: WBGene00003607, nhr-8, Nuclear hormone receptor family member nhr-8, [Score=89.4, Expect=1e-18]} {Smed: dd_Smed_v6_14067_0_2, dd_Smed_v6_14067_0_2, [RH, Score=94.0, Expect=5e-20]} {RNA1509_24367, RNA1509_36420, RNA1509_3835, RNA1509_43631, RNA1509_45925, RNA1509_55162, RNA1509_59667} {RNA1310_4758.2, RNA1509_24367, RNA1509_36420, RNA1509_3835, RNA1509_43631, RNA1509_45925, RNA1509_55162, RNA1509_59667} {RNA1509_24367, RNA1509_36420, RNA1509_3835, RNA1509_43631, RNA1509_45925, RNA1509_55162, RNA1509_59667, RNA815_2117}
4.	MligTC455_47074	420	8.76	Mlig455_008016	Neo: - Age: -		1.715	-	-	-	-	0.764	0.951	Mlig455_008016 {REF} {Length: 2447} {TRANSSPLICED} {Pfam: F-box domain [PF00646.35, score=27.5]; F-box-like [PF12937.9, score=25.3]} {RNA1509_28972} {RNA1310_11116.1} {RNA815_26042}
5.	MligTC455_49480	3325	69.28	Mlig455_061462	Neo: - Age: - Regeneration-upregulated BL: 1.148 Regeneration-enriched BL: 1.148	RBM39	0.972	-	-	-	0.972	-	-	Mlig455_061462 {REF} {Length: 2374} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=136.6]; linker between RRM2 and RRM3 domains in RBM39 protein [PF15519.8, score=60.2]} {Human: ENSG00000131051, RBM39, RNA binding motif protein 39, [RH, Score=363, Expect=1e-118]} {Mouse: ENSMUSG00000027620, Rbm39, RNA binding motif protein 39, [RH, Score=363, Expect=9e-119]} {Dmel: FBgn0031883, Caper, [RH, Score=342, Expect=1e-109]} {Celegans: WBGene00021921, Y55F3AM.3, [RH, Score=258, Expect=6e-78]} {Smed: dd_Smed_v6_1932_0_1, dd_Smed_v6_1932_0_1, [RH, Score=276, Expect=2e-86]} {RNA1509_4239, RNA1509_43417, RNA1509_9704} {RNA1310_3908, RNA1509_4239, RNA1509_43417} {RNA1509_4239, RNA1509_43417, RNA815_1081.1}
6.	MligTC455_50995	213	4.43	Mlig455_021618	Neo: - Age: Up-Down-Up	PUF60	0.968	-	-	-	-	-	0.968	Mlig455_021618 {REF} {Length: 2854} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=93.7]; RNA recognition motif [PF16367.7, score=29.9]} {Human: ENSG00000179950, PUF60, poly(U) binding splicing factor 60, [Score=227, Expect=2e-69]; ENSG00000274081, PUF60, poly(U) binding splicing factor 60, [Score=226, Expect=2e-71]} {Mouse: ENSMUSG00000002524, Puf60, poly-U binding splicing factor 60, [Score=226, Expect=5e-69]} {Dmel: FBgn0028577, hfp, half pint, [Score=223, Expect=4e-67]} {Celegans: WBGene00004389, rnp-6, RNP (RRM RNA binding domain) containing, [Score=182, Expect=1e-54]} {Smed: dd_Smed_v6_3853_0_3, dd_Smed_v6_3853_0_3, [Score=194, Expect=1e-57]} {RNA1509_19490} {RNA1310_20850} {RNA815_13982}
7.	MligTC455_20077	331	6.9	Mlig455_005551	Neo: - Age: Up-Down-Up	RABL6	0.967	-	-	-	-	-	0.967	Mlig455_005551 {REF} {Length: 4721} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=80.4]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=64.5]; ADP-ribosylation factor family [PF00025.23, score=49.0]; 50S ribosome-binding GTPase [PF01926.25, score=41.0]; Virulence-associated protein E [PF05272.13, score=22.1]; Bacterial TniB protein [PF05621.13, score=21.5]; RsgA GTPase [PF03193.18, score=18.8]} {Human: ENSG00000196642, RABL6, RAB, member RAS oncogene family like 6, [RH, Score=295, Expect=5e-88]} {Mouse: ENSMUSG00000015087, Rabl6, RAB, member RAS oncogene family-like 6, [RH, Score=276, Expect=3e-81]} {Dmel: FBgn0030200, RabX2, [Score=62.8, Expect=6e-11]} {Celegans: WBGene00008585, F08G12.1, [RH, Score=226, Expect=7e-64]} {Smed: dd_Smed_v6_6925_0_3, dd_Smed_v6_6925_0_3, [RH, Score=290, Expect=2e-91]} {RNA1509_28934} {RNA1310_15803} {RNA815_6147.1}
8.	MligTC455_53207	912	18.99	Mlig455_008631, Mlig455_030293	Neo: - Age: -	PRKAA2	0.962	-	-	-	-	-	0.962	Mlig455_008631 {REF} {Length: 3741} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=254.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=147.7]; Adenylate sensor of SNF1-like protein kinase [PF16579.7, score=39.0]; ABC1 atypical kinase-like domain [PF03109.18, score=28.8]; Kinase-like [PF14531.8, score=27.5]; RIO1 family [PF01163.24, score=22.0]} {Human: ENSG00000162409, PRKAA2, protein kinase AMP-activated catalytic subunit alpha 2, [RH, Score=569, Expect=0.0]} {Mouse: ENSMUSG00000028518, Prkaa2, protein kinase, AMP-activated, alpha 2 catalytic subunit, [Score=569, Expect=0.0]; ENSMUSG00000050697, Prkaa1, protein kinase, AMP-activated, alpha 1 catalytic subunit, [Score=543, Expect=0.0]} {Dmel: FBgn0023169, AMPKalpha, AMP-activated protein kinase alpha subunit, [RH, Score=583, Expect=0.0]} {Celegans: WBGene00020142, aak-2, 5'-AMP-activated protein kinase catalytic subunit alpha-2, [RH, Score=544, Expect=0.0]} {Smed: dd_Smed_v6_2538_0_1, dd_Smed_v6_2538_0_1, [RH, Score=607, Expect=0.0]} {RNA1509_26070} {RNA1310_12782.1} {RNA815_11226} Mlig455_030293 {REF} {Length: 3953} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=254.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=147.7]; Adenylate sensor of SNF1-like protein kinase [PF16579.7, score=39.0]; ABC1 atypical kinase-like domain [PF03109.18, score=28.8]; Kinase-like [PF14531.8, score=27.6]; RIO1 family [PF01163.24, score=22.0]} {Human: ENSG00000162409, PRKAA2, protein kinase AMP-activated catalytic subunit alpha 2, [RH, Score=571, Expect=0.0]} {Mouse: ENSMUSG00000028518, Prkaa2, protein kinase, AMP-activated, alpha 2 catalytic subunit, [RH, Score=568, Expect=0.0]} {Dmel: FBgn0023169, AMPKalpha, AMP-activated protein kinase alpha subunit, [RH, Score=583, Expect=0.0]} {Celegans: WBGene00020142, aak-2, 5'-AMP-activated protein kinase catalytic subunit alpha-2, [RH, Score=544, Expect=0.0]} {Smed: dd_Smed_v6_2538_0_1, dd_Smed_v6_2538_0_1, [RH, Score=606, Expect=0.0]} {RNA1509_26070} {RNA1310_12782.1} {RNA815_11226}
9.	MligTC455_46904	678	14.13	Mlig455_059203	Neo: - Age: logFC(26M/2M)=0.243	ECE2	0.959	-	-	-	-	-	0.959	Mlig455_059203 {REF} {Length: 4901} {TRANSSPLICED} {Pfam: Peptidase family M13 [PF05649.15, score=252.9]; Peptidase family M13 [PF01431.23, score=216.9]} {Human: ENSG00000145194, ECE2, endothelin converting enzyme 2, [Score=405, Expect=2e-129]; ENSG00000284917, EEF1AKMT4-ECE2, EEF1AKMT4-ECE2 readthrough, [Score=405, Expect=1e-127]; ENSG00000117298, ECE1, endothelin converting enzyme 1, [Score=397, Expect=5e-126]} {Mouse: ENSMUSG00000057530, Ece1, endothelin converting enzyme 1, [Score=409, Expect=4e-131]; ENSMUSG00000022842, Ece2, endothelin converting enzyme 2, [Score=399, Expect=9e-127]; ENSMUSG00000115293, Gm49333, predicted gene, 49333, [Score=397, Expect=8e-125]} {Dmel: FBgn0031081, Nep3, Neprilysin 3, [RH, Score=420, Expect=5e-135]} {Celegans: WBGene00020230, nep-2, Neprilysin-2, [RH, Score=362, Expect=2e-113]} {Smed: dd_Smed_v6_8276_0_1, dd_Smed_v6_8276_0_1, [RH, Score=369, Expect=8e-116]} {RNA1509_9164} {RNA1310_7089.1, RNA1509_9164} {RNA1509_9164, RNA815_4968}
10.	MligTC455_23200	444	9.25	Mlig455_015769	Neo: Irradiation Age: - Region-enriched R4: 1.517/0.03477	TTBK1	0.958	-	-	-	-	-	0.958	Mlig455_015769 {REF} {Length: 4899} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=114.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=77.1]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=32.8]} {Human: ENSG00000146216, TTBK1, tau tubulin kinase 1, [RH, Score=489, Expect=1e-156]; ENSG00000128881, TTBK2, tau tubulin kinase 2, [RH, Score=489, Expect=2e-157]} {Mouse: ENSMUSG00000090100, Ttbk2, tau tubulin kinase 2, [RH, Score=489, Expect=1e-157]; ENSMUSG00000015599, Ttbk1, tau tubulin kinase 1, [RH, Score=489, Expect=7e-157]} {Dmel: FBgn0039908, Asator, [RH, Score=491, Expect=2e-157]} {Celegans: WBGene00011283, R90.1, [RH, Score=408, Expect=2e-131]} {Smed: dd_Smed_v6_13113_0_1, dd_Smed_v6_13113_0_1, [RH, Score=460, Expect=4e-155]} {RNA1509_4101} {RNA1310_2420} {RNA815_9682.1}
11.	MligTC455_35651	3394	70.71	Mlig455_026026	Neo: - Age: Up-Down-Down	TM9SF2	0.955	-	-	-	0.955	-	-	Mlig455_026026 {REF} {Length: 4473} {Pfam: Endomembrane protein 70 [PF02990.18, score=696.7]} {Human: ENSG00000125304, TM9SF2, transmembrane 9 superfamily member 2, [RH, Score=934, Expect=0.0]} {Mouse: ENSMUSG00000025544, Tm9sf2, transmembrane 9 superfamily member 2, [RH, Score=929, Expect=0.0]} {Dmel: FBgn0032880, TM9SF2, Transmembrane 9 superfamily protein member 2, [RH, Score=909, Expect=0.0]} {Celegans: WBGene00006472, tag-123, Transmembrane 9 superfamily member, [RH, Score=815, Expect=0.0]} {Smed: dd_Smed_v6_2806_0_1, dd_Smed_v6_2806_0_1, [Score=479, Expect=3e-162]} {RNA1509_1479, RNA1509_22051, RNA1509_33880, RNA1509_7099} {RNA1310_5904, RNA1509_22051, RNA1509_33880, RNA1509_7099} {RNA1509_22051, RNA1509_33880, RNA1509_7099, RNA815_2009}
12.	MligTC455_49481	2896	60.33	Mlig455_061474	Neo: - Age: - Regeneration-upregulated BL: 1.088 Regeneration-enriched BL: 1.088	RBM39	0.954	-	-	-	0.954	-	-	Mlig455_061474 {REF} {Length: 2417} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=137.4]; linker between RRM2 and RRM3 domains in RBM39 protein [PF15519.8, score=59.8]} {Human: ENSG00000131051, RBM39, RNA binding motif protein 39, [RH, Score=365, Expect=2e-119]} {Mouse: ENSMUSG00000027620, Rbm39, RNA binding motif protein 39, [RH, Score=365, Expect=1e-119]} {Dmel: FBgn0031883, Caper, [Score=342, Expect=6e-110]} {Celegans: WBGene00021921, Y55F3AM.3, [RH, Score=259, Expect=2e-78]} {Smed: dd_Smed_v6_1932_0_1, dd_Smed_v6_1932_0_1, [RH, Score=273, Expect=2e-85]} {RNA1509_9704} {RNA1310_3436.2, RNA1509_9704} {RNA1509_9704, RNA815_1081.1}
13.	MligTC455_42048	333	6.94	Mlig455_027137	Neo: - Age: -		0.953	-	-	-	-	-	0.953	Mlig455_027137 {REF} {Length: 1224} {Pfam: CUE domain [PF02845.18, score=19.0]} {RNA1509_54789} {RNA1310_19777} {RNA815_7846}
14.	MligTC455_15266	503	10.47	Mlig455_038028	Neo: - Age: logFC(26M/2M)=-0.321		0.952	-	-	-	-	-	0.952	Mlig455_038028 {REF} {Length: 4683} {TRANSSPLICED} {Pfam: ALMS motif [PF15309.8, score=45.7]} {Smed: dd_Smed_v6_5064_0_1, dd_Smed_v6_5064_0_1, [Score=87.0, Expect=3e-17]} {RNA1509_23365} {RNA1310_3943.1, RNA1509_23365} {RNA1509_23365, RNA815_19405}

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