M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_39966

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_39966 945 19.68 Mlig455_068099

Neo: -

Age: -

 DHX16 Mlig455_068099 {REF} {Length: 3162} {TRANSSPLICED} {Pfam: Helicase associated domain (HA2) [PF04408.25, score=77.8]; Oligonucleotide/oligosaccharide-binding (OB)-fold [PF07717.18, score=64.4]; Helicase conserved C-terminal domain [PF00271.33, score=45.6]; DEAD/DEAH box helicase [PF00270.31, score=24.9]; AAA domain [PF13401.8, score=21.6]; AAA domain [PF13604.8, score=19.3]} {Human: ENSG00000233418, DHX16, DEAH-box helicase 16, [RH, Score=1186, Expect=0.0]; ENSG00000231377, DHX16, DEAH-box helicase 16, [RH, Score=1186, Expect=0.0]; ENSG00000233561, DHX16, DEAH-box helicase 16, [RH, Score=1186, Expect=0.0]; ENSG00000233049, DHX16, DEAH-box helicase 16, [RH, Score=1186, Expect=0.0]; ENSG00000204560, DHX16, DEAH-box helicase 16, [RH, Score=1186, Expect=0.0]; ENSG00000226171, DHX16, DEAH-box helicase 16, [RH, Score=1186, Expect=0.0]; ENSG00000206486, DHX16, DEAH-box helicase 16, [RH, Score=1182, Expect=0.0]} {Mouse: ENSMUSG00000024422, Dhx16, DEAH (Asp-Glu-Ala-His) box polypeptide 16, [RH, Score=1187, Expect=0.0]} {Dmel: FBgn0086444, l(2)37Cb, lethal (2) 37Cb, [RH, Score=1224, Expect=0.0]} {Celegans: WBGene00003392, mog-4, Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4, [RH, Score=1162, Expect=0.0]} {Smed: dd_Smed_v6_10434_0_1, dd_Smed_v6_10434_0_1, [RH, Score=882, Expect=0.0]} {RNA1509_45569, RNA1509_6379} {RNA1310_4272, RNA1509_45569} {RNA1509_45569, RNA815_1313}

Cumulative graph for MligTC455_39966

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.764 4.582 0.44920 1.00000
RegionR2 -0.168 4.582 0.64902 0.98429
RegionR3 -0.317 4.582 0.31481 0.85401
RegionR4 -0.096 4.582 0.77135 1.00000
RegionR5 0.077 4.582 0.76976 1.00000
RegionR6 0.044 4.582 0.88524 1.00000
RegionR7 0.468 4.582 0.25608 0.88300
RegionR8 0.755 4.582 0.15609 0.71582

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -7.311 4.582 0.07320 0.76054
RegenerationR2 0.131 4.582 0.62733 0.92609
RegenerationR3 0.424 4.582 0.16827 0.60262
RegenerationR4 0.335 4.582 0.23756 0.68675
RegenerationR5 0.456 4.582 0.07291 0.42349
RegenerationR6 0.506 4.582 0.08508 0.36507
RegenerationBL 0.461 4.582 0.18370 0.51366
RegenerationTP -0.194 4.582 0.64318 0.98516


Genes with expression patterns similar to MligTC455_39966

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_39966 945 19.68 Mlig455_068099

Neo: -

Age: -

 DHX16 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_068099 {REF} {Length: 3162} {TRANSSPLICED} {Pfam: Helicase associated domain (HA2) [PF04408.25, score=77.8]; Oligonucleotide/oligosaccharide-binding (OB)-fold [PF07717.18, score=64.4]; Helicase conserved C-terminal domain [PF00271.33, score=45.6]; DEAD/DEAH box helicase [PF00270.31, score=24.9]; AAA domain [PF13401.8, score=21.6]; AAA domain [PF13604.8, score=19.3]} {Human: ENSG00000233418, DHX16, DEAH-box helicase 16, [RH, Score=1186, Expect=0.0]; ENSG00000231377, DHX16, DEAH-box helicase 16, [RH, Score=1186, Expect=0.0]; ENSG00000233561, DHX16, DEAH-box helicase 16, [RH, Score=1186, Expect=0.0]; ENSG00000233049, DHX16, DEAH-box helicase 16, [RH, Score=1186, Expect=0.0]; ENSG00000204560, DHX16, DEAH-box helicase 16, [RH, Score=1186, Expect=0.0]; ENSG00000226171, DHX16, DEAH-box helicase 16, [RH, Score=1186, Expect=0.0]; ENSG00000206486, DHX16, DEAH-box helicase 16, [RH, Score=1182, Expect=0.0]} {Mouse: ENSMUSG00000024422, Dhx16, DEAH (Asp-Glu-Ala-His) box polypeptide 16, [RH, Score=1187, Expect=0.0]} {Dmel: FBgn0086444, l(2)37Cb, lethal (2) 37Cb, [RH, Score=1224, Expect=0.0]} {Celegans: WBGene00003392, mog-4, Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4, [RH, Score=1162, Expect=0.0]} {Smed: dd_Smed_v6_10434_0_1, dd_Smed_v6_10434_0_1, [RH, Score=882, Expect=0.0]} {RNA1509_45569, RNA1509_6379} {RNA1310_4272, RNA1509_45569} {RNA1509_45569, RNA815_1313}
2. MligTC455_29794 13232 275.67 Mlig455_008533, Mlig455_023375, Mlig455_068951

Neo: Neoblast, stringent

Age: Down-Up-Up, logFC(26M/2M)=0.338

Regeneration-upregulated BL: 1.258

Regeneration-enriched BL: 1.258

 DDX39B 1.794 - - - 0.832 - 0.962

Mlig455_008533 {REF} {Length: 1439}

Mlig455_023375 {REF} {Length: 1739} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=141.2]; Helicase conserved C-terminal domain [PF00271.33, score=92.8]; U3-containing 90S pre-ribosomal complex subunit [PF14617.8, score=33.4]; Type III restriction enzyme, res subunit [PF04851.17, score=29.8]} {Human: ENSG00000198563, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000229496, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000235439, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000225859, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000230624, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000215425, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000225073, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000123136, DDX39A, DExD-box helicase 39A, [RH, Score=701, Expect=0.0]} {Mouse: ENSMUSG00000019432, Ddx39b, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B, [RH, Score=716, Expect=0.0]; ENSMUSG00000005481, Ddx39, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, [RH, Score=703, Expect=0.0]} {Dmel: FBgn0014189, Hel25E, Helicase at 25E, [RH, Score=699, Expect=0.0]} {Celegans: WBGene00001840, hel-1, Spliceosome RNA helicase DDX39B homolog, [RH, Score=655, Expect=0.0]} {Smed: dd_Smed_v6_724_0_1, dd_Smed_v6_724_0_1, [RH, Score=714, Expect=0.0]} {RNA1509_16673} {RNA1310_11845, RNA1509_16673} {RNA1509_16673, RNA815_6753}

Mlig455_068951 {REF} {Length: 1734} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=141.2]; Helicase conserved C-terminal domain [PF00271.33, score=92.8]; U3-containing 90S pre-ribosomal complex subunit [PF14617.8, score=33.4]; Type III restriction enzyme, res subunit [PF04851.17, score=29.8]} {Human: ENSG00000225859, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000235439, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000215425, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000225073, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000198563, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000229496, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000230624, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000123136, DDX39A, DExD-box helicase 39A, [RH, Score=699, Expect=0.0]} {Mouse: ENSMUSG00000019432, Ddx39b, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B, [RH, Score=716, Expect=0.0]; ENSMUSG00000005481, Ddx39, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, [RH, Score=703, Expect=0.0]} {Dmel: FBgn0014189, Hel25E, Helicase at 25E, [RH, Score=699, Expect=0.0]} {Celegans: WBGene00001840, hel-1, Spliceosome RNA helicase DDX39B homolog, [RH, Score=654, Expect=0.0]} {Smed: dd_Smed_v6_724_0_1, dd_Smed_v6_724_0_1, [RH, Score=713, Expect=0.0]} {RNA1509_16673} {RNA1310_11845} {RNA815_6753}
3. MligTC455_22622 253 5.27 Mlig455_069069

Neo: -

Age: -

Regeneration-upregulated R6: 2.381

Regeneration-enriched R6: 2.381

 ATRX 1.786 - - - - 0.819 0.967 Mlig455_069069 {REF} {Length: 7313} {TRANSSPLICED} {Pfam: SNF2-related domain [PF00176.25, score=198.0]; Helicase conserved C-terminal domain [PF00271.33, score=51.8]} {Human: ENSG00000085224, ATRX, ATRX, chromatin remodeler, [Score=757, Expect=0.0]} {Mouse: ENSMUSG00000031229, Atrx, ATRX, chromatin remodeler, [RH, Score=759, Expect=0.0]} {Dmel: FBgn0039338, XNP, [RH, Score=709, Expect=0.0]} {Celegans: WBGene00006961, xnp-1, Transcriptional regulator ATRX homolog, [Score=626, Expect=0.0]} {Smed: dd_Smed_v6_5478_0_1, dd_Smed_v6_5478_0_1, [RH, Score=456, Expect=2e-139]} {RNA1509_2800} {RNA1310_990, RNA1509_2800} {RNA1509_2800, RNA815_839}
4. MligTC455_47969 1640 34.16 Mlig455_036234

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.600

Region-enriched R5: 1.638/0.00000
Region-enriched R4: 1.137/0.01951

 NMT2 1.782 - - - 0.829 - 0.953 Mlig455_036234 {REF} {Length: 1943} {TRANSSPLICED} {Pfam: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain [PF01233.21, score=252.7]; Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain [PF02799.17, score=233.5]; Acetyltransferase (GNAT) domain [PF13527.9, score=20.6]; Acetyltransferase (GNAT) family [PF00583.27, score=19.6]} {Human: ENSG00000152465, NMT2, N-myristoyltransferase 2, [RH, Score=510, Expect=1e-178]; ENSG00000136448, NMT1, N-myristoyltransferase 1, [RH, Score=501, Expect=5e-175]} {Mouse: ENSMUSG00000026643, Nmt2, N-myristoyltransferase 2, [RH, Score=514, Expect=2e-180]; ENSMUSG00000020936, Nmt1, N-myristoyltransferase 1, [RH, Score=503, Expect=6e-176]} {Dmel: FBgn0020392, Nmt, N-myristoyl transferase, [RH, Score=505, Expect=3e-177]} {Celegans: WBGene00020549, nmt-1, Probable glycylpeptide N-tetradecanoyltransferase, [RH, Score=455, Expect=3e-158]} {Smed: dd_Smed_v6_1145_0_1, dd_Smed_v6_1145_0_1, [RH, Score=489, Expect=1e-171]} {RNA1509_16947, RNA1509_27240, RNA1509_5138} {RNA1310_13485.1, RNA1509_16947, RNA1509_27240} {RNA1509_16947, RNA1509_27240, RNA815_5317}
5. MligTC455_29795 1641 34.19 Mlig455_046954

Neo: -

Age: -

 DDX39B 0.968 - - - - - 0.968 Mlig455_046954 {REF} {Length: 1734} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=141.2]; Helicase conserved C-terminal domain [PF00271.33, score=92.8]; U3-containing 90S pre-ribosomal complex subunit [PF14617.8, score=33.4]; Type III restriction enzyme, res subunit [PF04851.17, score=29.8]} {Human: ENSG00000225859, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000235439, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000215425, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000225073, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000198563, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000229496, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000230624, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000123136, DDX39A, DExD-box helicase 39A, [RH, Score=699, Expect=0.0]} {Mouse: ENSMUSG00000019432, Ddx39b, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B, [RH, Score=716, Expect=0.0]; ENSMUSG00000005481, Ddx39, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, [RH, Score=703, Expect=0.0]} {Dmel: FBgn0014189, Hel25E, Helicase at 25E, [RH, Score=699, Expect=0.0]} {Celegans: WBGene00001840, hel-1, Spliceosome RNA helicase DDX39B homolog, [RH, Score=654, Expect=0.0]} {Smed: dd_Smed_v6_724_0_1, dd_Smed_v6_724_0_1, [RH, Score=713, Expect=0.0]} {RNA1509_16673} {RNA1310_11845} {RNA815_6753}
6. MligTC455_48533 231 4.81 Mlig455_021648

Neo: -

Age: -

 CACUL1 0.955 - - - - - 0.955 Mlig455_021648 {REF} {Length: 1793} {TRANSSPLICED} {Pfam: Cullin family [PF00888.24, score=41.9]} {Human: ENSG00000151893, CACUL1, CDK2 associated cullin domain 1, [RH, Score=97.1, Expect=7e-23]} {Mouse: ENSMUSG00000033417, Cacul1, CDK2 associated, cullin domain 1, [Score=97.4, Expect=9e-23]} {RNA1509_52558} {RNA1310_2696.1} {RNA815_6533.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA