Data search
Results for MligTC455_40179
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_40179 | 405 | 8.43 | Mlig455_003559 | Neo: Int S/G2/M Age: - |
SRFBP1 | Mlig455_003559 {REF} {Length: 2189} {TRANSSPLICED} {Pfam: BUD22 [PF09073.12, score=34.6]} {Human: ENSG00000151304, SRFBP1, serum response factor binding protein 1, [Score=48.9, Expect=1e-05]} {Smed: dd_Smed_v6_9477_0_1, dd_Smed_v6_9477_0_1, [Score=46.6, Expect=1e-05]} {RNA1509_28746} {RNA1310_17756, RNA1509_28746} {RNA1509_28746, RNA815_1312.1} |
Cumulative graph for MligTC455_40179
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | 0.441 | 3.516 | 0.72177 | 1.00000 | |
| RegionR2 | 0.027 | 3.516 | 0.95738 | 1.00000 | |
| RegionR3 | -0.141 | 3.516 | 0.76381 | 1.00000 | |
| RegionR4 | 0.138 | 3.516 | 0.77308 | 1.00000 | |
| RegionR5 | 0.879 | 3.516 | 0.01542 | 0.07988 | |
| RegionR6 | -0.115 | 3.516 | 0.81207 | 1.00000 | |
| RegionR7 | 0.685 | 3.516 | 0.23919 | 0.86354 | |
| RegionR8 | -1.915 | 3.516 | 0.09955 | 0.59314 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -6.935 | 3.516 | 0.11075 | 0.83476 | |
| RegenerationR2 | -0.44 | 3.516 | 0.31204 | 0.75201 | |
| RegenerationR3 | -0.173 | 3.516 | 0.71199 | 0.95204 | |
| RegenerationR4 | -0.371 | 3.516 | 0.40262 | 0.81495 | |
| RegenerationR5 | -0.382 | 3.516 | 0.30980 | 0.73613 | |
| RegenerationR6 | 0.471 | 3.516 | 0.31171 | 0.65950 | |
| RegenerationBL | 0.764 | 3.516 | 0.25441 | 0.61139 | |
| RegenerationTP | 0.54 | 3.516 | 0.52799 | 0.91885 |
Genes with expression patterns similar to MligTC455_40179
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_40179 | 405 | 8.43 | Mlig455_003559 | Neo: Int S/G2/M Age: - |
SRFBP1 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_003559 {REF} {Length: 2189} {TRANSSPLICED} {Pfam: BUD22 [PF09073.12, score=34.6]} {Human: ENSG00000151304, SRFBP1, serum response factor binding protein 1, [Score=48.9, Expect=1e-05]} {Smed: dd_Smed_v6_9477_0_1, dd_Smed_v6_9477_0_1, [Score=46.6, Expect=1e-05]} {RNA1509_28746} {RNA1310_17756, RNA1509_28746} {RNA1509_28746, RNA815_1312.1} |
| 2. | MligTC455_45630 | 134 | 2.8 | Mlig455_026867 | Neo: - Age: - |
IRF2 | 0.97 | - | - | - | - | - | 0.970 | Mlig455_026867 {REF} {Length: 4144} {Pfam: Interferon regulatory factor transcription factor [PF00605.19, score=68.7]} {Human: ENSG00000168310, IRF2, interferon regulatory factor 2, [RH, Score=58.2, Expect=1e-09]} {Mouse: ENSMUSG00000031627, Irf2, interferon regulatory factor 2, [RH, Score=57.8, Expect=1e-09]} {RNA1509_40698} {RNA1310_29079} {RNA815_23289} |
| 3. | MligTC455_25276 | 124 | 2.59 | Mlig455_024081 | Neo: - Age: - Region-enriched R4: 3.721/0.04372 |
0.958 | - | - | - | - | - | 0.958 | Mlig455_024081 {REF} {Length: 1384} {TRANSSPLICED} {Pfam: Complex 1 protein (LYR family) [PF05347.17, score=47.3]; Complex1_LYR-like [PF13233.8, score=20.4]} {RNA1509_37248} {RNA1310_65243} {RNA815_33572} | |
| 4. | MligTC455_40704 | 162 | 3.38 | Mlig455_026363 | Neo: Int S/G2/M Age: Down-Up-Up |
CCDC174 | 0.957 | - | - | - | - | - | 0.957 | Mlig455_026363 {REF} {Length: 1097} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4078) [PF13300.8, score=44.2]} {Human: ENSG00000154781, CCDC174, coiled-coil domain containing 174, [Score=50.4, Expect=2e-06]} {RNA1509_19175} {RNA1310_28722} {RNA815_14570} |
| 5. | MligTC455_48567 | 358 | 7.45 | Mlig455_043150 | Neo: - Age: - Region-enriched R5: 1.668/0.02982 |
0.956 | - | - | - | - | - | 0.956 | Mlig455_043150 {REF} {Length: 3448} {TRANSSPLICED} {RNA1509_54015} {RNA1310_37014, RNA1509_54015} {RNA1509_54015, RNA815_7246.1} | |
| 6. | MligTC455_39784 | 616 | 12.84 | Mlig455_060653 | Neo: - Age: - Region-enriched R4: 1.436/0.01220 |
SHANK3 | 0.954 | - | - | - | - | 0.954 | - | Mlig455_060653 {REF} {Length: 6242} {TRANSSPLICED} {tRNA: Arg(ACG), score=72.3} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=78.0]; Ankyrin repeats (3 copies) [PF12796.9, score=73.7]; Ankyrin repeats (many copies) [PF13857.8, score=55.6]; Ankyrin repeat [PF00023.32, score=47.3]; Ankyrin repeat [PF13606.8, score=41.5]; PDZ domain [PF00595.26, score=40.5]; PDZ domain [PF17820.3, score=37.5]; N-terminal or F0 domain of Talin-head FERM [PF16511.7, score=22.7]} {Human: ENSG00000251322, SHANK3, SH3 and multiple ankyrin repeat domains 3, [RH, Score=358, Expect=6e-103]; ENSG00000283243, SHANK3, SH3 and multiple ankyrin repeat domains 3, [RH, Score=358, Expect=5e-103]; ENSG00000161681, SHANK1, SH3 and multiple ankyrin repeat domains 1, [RH, Score=344, Expect=4e-98]} {Mouse: ENSMUSG00000022623, Shank3, SH3 and multiple ankyrin repeat domains 3, [RH, Score=354, Expect=9e-102]; ENSMUSG00000038738, Shank1, SH3 and multiple ankyrin repeat domains 1, [RH, Score=341, Expect=2e-97]; ENSMUSG00000037541, Shank2, SH3 and multiple ankyrin repeat domains 2, [RH, Score=340, Expect=6e-97]} {Dmel: FBgn0040752, Prosap, [RH, Score=392, Expect=1e-114]} {Celegans: WBGene00006444, shn-1, SHaNk (SH3/ankyrin domain scaffold protein) related, [Score=318, Expect=2e-92]} {Smed: dd_Smed_v6_4371_0_1, dd_Smed_v6_4371_0_1, [RH, Score=425, Expect=2e-132]} {RNA1509_29923, RNA1509_5286} {RNA1310_5766, RNA1509_29923} {RNA1509_29923, RNA815_2909} |
| 7. | MligTC455_53536 | 6320 | 131.67 | Mlig455_046722, Mlig455_046837, Mlig455_046844 | Neo: - Age: logFC(26M/2M)=0.195 Regeneration-upregulated BL: 2.033 Regeneration-enriched BL: 2.033 |
HNRNPH1, HNRNPH2 | 0.952 | - | - | - | - | 0.952 | - | Mlig455_046722 {REF} {Length: 2332} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=111.4]} {Human: ENSG00000169045, HNRNPH1, heterogeneous nuclear ribonucleoprotein H1, [RH, Score=226, Expect=8e-68]; ENSG00000126945, HNRNPH2, heterogeneous nuclear ribonucleoprotein H2, [RH, Score=226, Expect=4e-68]; ENSG00000284254, HNRNPH1, heterogeneous nuclear ribonucleoprotein H1, [RH, Score=226, Expect=8e-68]; ENSG00000169813, HNRNPF, heterogeneous nuclear ribonucleoprotein F, [RH, Score=223, Expect=4e-67]} {Mouse: ENSMUSG00000045427, Hnrnph2, heterogeneous nuclear ribonucleoprotein H2, [RH, Score=230, Expect=1e-69]; ENSMUSG00000007850, Hnrnph1, heterogeneous nuclear ribonucleoprotein H1, [RH, Score=226, Expect=5e-68]; ENSMUSG00000042079, Hnrnpf, heterogeneous nuclear ribonucleoprotein F, [RH, Score=223, Expect=3e-67]} {Dmel: FBgn0259139, glo, glorund, [RH, Score=132, Expect=7e-33]} {Celegans: WBGene00006367, sym-2, RNA-binding protein sym-2, [Score=112, Expect=3e-27]} {Smed: dd_Smed_v6_1957_0_1, dd_Smed_v6_1957_0_1, [RH, Score=167, Expect=3e-47]} {RNA1509_3891} {RNA1310_9870.1} {RNA815_3405} Mlig455_046837 {REF} {Length: 2331} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=110.3]} {Human: ENSG00000126945, HNRNPH2, heterogeneous nuclear ribonucleoprotein H2, [RH, Score=226, Expect=4e-68]; ENSG00000284254, HNRNPH1, heterogeneous nuclear ribonucleoprotein H1, [RH, Score=226, Expect=6e-68]; ENSG00000169045, HNRNPH1, heterogeneous nuclear ribonucleoprotein H1, [RH, Score=226, Expect=6e-68]; ENSG00000169813, HNRNPF, heterogeneous nuclear ribonucleoprotein F, [RH, Score=223, Expect=4e-67]} {Mouse: ENSMUSG00000045427, Hnrnph2, heterogeneous nuclear ribonucleoprotein H2, [RH, Score=230, Expect=1e-69]; ENSMUSG00000007850, Hnrnph1, heterogeneous nuclear ribonucleoprotein H1, [RH, Score=226, Expect=4e-68]; ENSMUSG00000042079, Hnrnpf, heterogeneous nuclear ribonucleoprotein F, [RH, Score=223, Expect=3e-67]} {Dmel: FBgn0259139, glo, glorund, [RH, Score=133, Expect=4e-33]} {Celegans: WBGene00022253, hrpf-2, HnRNP F homolog, [RH, Score=129, Expect=6e-32]} {Smed: dd_Smed_v6_1957_0_1, dd_Smed_v6_1957_0_1, [RH, Score=167, Expect=3e-47]} {RNA1509_3891} {RNA1310_9870.1, RNA1509_3891} {RNA1509_3891, RNA815_3405} Mlig455_046844 {REF} {Length: 2331} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=110.2]} {Human: ENSG00000284254, HNRNPH1, heterogeneous nuclear ribonucleoprotein H1, [RH, Score=224, Expect=1e-67]; ENSG00000126945, HNRNPH2, heterogeneous nuclear ribonucleoprotein H2, [RH, Score=224, Expect=3e-67]; ENSG00000169045, HNRNPH1, heterogeneous nuclear ribonucleoprotein H1, [RH, Score=224, Expect=1e-67]; ENSG00000169813, HNRNPF, heterogeneous nuclear ribonucleoprotein F, [RH, Score=219, Expect=7e-66]} {Mouse: ENSMUSG00000045427, Hnrnph2, heterogeneous nuclear ribonucleoprotein H2, [RH, Score=228, Expect=7e-69]; ENSMUSG00000007850, Hnrnph1, heterogeneous nuclear ribonucleoprotein H1, [RH, Score=224, Expect=2e-67]; ENSMUSG00000042079, Hnrnpf, heterogeneous nuclear ribonucleoprotein F, [RH, Score=220, Expect=4e-66]} {Dmel: FBgn0259139, glo, glorund, [RH, Score=133, Expect=4e-33]} {Celegans: WBGene00022253, hrpf-2, HnRNP F homolog, [RH, Score=129, Expect=6e-32]} {Smed: dd_Smed_v6_1957_0_1, dd_Smed_v6_1957_0_1, [RH, Score=167, Expect=2e-47]} {RNA1509_3891} {RNA1310_9870.1} {RNA815_3405} |
| 8. | MligTC455_34941 | 1300 | 27.08 | Mlig455_050149 | Neo: - Age: logFC(26M/2M)=0.240 |
MIA2 | 0.95 | - | - | - | - | 0.950 | - | Mlig455_050149 {REF} {Length: 7267} {TRANSSPLICED} {Human: ENSG00000150527, MIA2, MIA SH3 domain ER export factor 2, [RH, Score=67.0, Expect=3e-10]; ENSG00000285123, CTAGE6, CTAGE family member 6, [RH, Score=65.9, Expect=6e-10]; ENSG00000271321, CTAGE6, CTAGE family member 6, [RH, Score=65.9, Expect=6e-10]; ENSG00000285172, CTAGE15, CTAGE family member 15, [RH, Score=65.5, Expect=7e-10]; ENSG00000271079, CTAGE15, CTAGE family member 15, [RH, Score=65.5, Expect=7e-10]; ENSG00000236761, CTAGE9, CTAGE family member 9, [RH, Score=65.1, Expect=9e-10]} {Mouse: ENSMUSG00000056050, Mia3, melanoma inhibitory activity 3, [RH, Score=64.3, Expect=7e-10]; ENSMUSG00000021000, Mia2, melanoma inhibitory activity 2, [RH, Score=62.8, Expect=4e-09]} {Dmel: FBgn0031842, Tango1, Transport and Golgi organization 1, [RH, Score=82.4, Expect=3e-15]} {RNA1509_2081, RNA1509_43176} {RNA1310_854.2, RNA1509_43176} {RNA1509_43176, RNA815_1012.1} |