TomoSeq data search

Data search

Results for MligTC455_40676

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_40676

1450

30.21

Mlig455_006182

Neo: -

Age: logFC(26M/2M)=0.222

Region-specific R5: 1.802

Region-enriched R2: 1.353/0.01437
Region-enriched R5: 1.126/0.00018

Regeneration-enriched R6: 2.643
Regeneration-enriched R4: 2.137
Regeneration-enriched BL: 1.762
Regeneration-enriched R3: 1.566
Regeneration-enriched R2: 1.231

RBPMS

Mlig455_006182 {REF} {Length: 2372} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=50.9]} {Human: ENSG00000157110, RBPMS, RNA binding protein, mRNA processing factor, [RH, Score=134, Expect=2e-37]} {Mouse: ENSMUSG00000031586, Rbpms, RNA binding protein gene with multiple splicing, [RH, Score=131, Expect=1e-36]; ENSMUSG00000032387, Rbpms2, RNA binding protein with multiple splicing 2, [RH, Score=129, Expect=1e-35]} {Dmel: FBgn0263995, cpo, couch potato, [Score=186, Expect=6e-54]} {Celegans: WBGene00003172, mec-8, Mec-8 protein, [RH, Score=149, Expect=2e-42]} {Smed: dd_Smed_v6_4296_0_3, dd_Smed_v6_4296_0_3, [RH, Score=165, Expect=1e-48]} {RNA1509_55380} {RNA1310_9719} {RNA815_4041.1}

Cumulative graph for MligTC455_40676

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.35	5.16	0.18465	0.81476
RegionR2	1.353	5.16	0.00055	0.01437
RegionR3	-0.366	5.16	0.26314	0.80815
RegionR4	-1.82	5.16	0.00002	0.00037
RegionR5	1.126	5.16	0.00001	0.00018	Specific for R5: 1.802
RegionR6	-0.129	5.16	0.69706	1.00000
RegionR7	0.537	5.16	0.19192	0.79698
RegionR8	0.649	5.16	0.19890	0.79586

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.953	5.16	0.56891	1.00000
RegenerationR2	1.231	5.16	0.00001	0.00286
RegenerationR3	1.566	5.16	0.00002	0.00386
RegenerationR4	2.137	5.16	0.00000	0.00001
RegenerationR5	0.567	5.16	0.06110	0.39285
RegenerationR6	2.643	5.16	0.00000	0.00000
RegenerationBL	1.762	5.16	0.00000	0.00020
RegenerationTP	0.702	5.16	0.10500	0.50165

Genes with expression patterns similar to MligTC455_40676

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_40676	1450	30.21	Mlig455_006182	Neo: - Age: logFC(26M/2M)=0.222 Region-specific R5: 1.802 Region-enriched R2: 1.353/0.01437 Region-enriched R5: 1.126/0.00018 Regeneration-enriched R6: 2.643 Regeneration-enriched R4: 2.137 Regeneration-enriched BL: 1.762 Regeneration-enriched R3: 1.566 Regeneration-enriched R2: 1.231	RBPMS	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_006182 {REF} {Length: 2372} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=50.9]} {Human: ENSG00000157110, RBPMS, RNA binding protein, mRNA processing factor, [RH, Score=134, Expect=2e-37]} {Mouse: ENSMUSG00000031586, Rbpms, RNA binding protein gene with multiple splicing, [RH, Score=131, Expect=1e-36]; ENSMUSG00000032387, Rbpms2, RNA binding protein with multiple splicing 2, [RH, Score=129, Expect=1e-35]} {Dmel: FBgn0263995, cpo, couch potato, [Score=186, Expect=6e-54]} {Celegans: WBGene00003172, mec-8, Mec-8 protein, [RH, Score=149, Expect=2e-42]} {Smed: dd_Smed_v6_4296_0_3, dd_Smed_v6_4296_0_3, [RH, Score=165, Expect=1e-48]} {RNA1509_55380} {RNA1310_9719} {RNA815_4041.1}
2.	MligTC455_40677	1364	28.42	Mlig455_065228	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.383 Region-specific R5: 1.783 Region-enriched R2: 1.313/0.02638 Region-enriched R5: 1.109/0.00048 Regeneration-enriched R6: 2.663 Regeneration-enriched R4: 1.914 Regeneration-enriched BL: 1.697	RBPMS	5.857	0.982	0.971	0.990	0.978	0.960	0.976	Mlig455_065228 {REF} {Length: 1378} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=52.0]} {Human: ENSG00000157110, RBPMS, RNA binding protein, mRNA processing factor, [RH, Score=133, Expect=2e-37]} {Mouse: ENSMUSG00000031586, Rbpms, RNA binding protein gene with multiple splicing, [RH, Score=131, Expect=1e-36]; ENSMUSG00000032387, Rbpms2, RNA binding protein with multiple splicing 2, [RH, Score=126, Expect=4e-35]} {Dmel: FBgn0263995, cpo, couch potato, [RH, Score=187, Expect=3e-53]} {Celegans: WBGene00003172, mec-8, Mec-8 protein, [RH, Score=148, Expect=3e-42]} {Smed: dd_Smed_v6_4296_0_3, dd_Smed_v6_4296_0_3, [RH, Score=162, Expect=1e-47]} {RNA1509_3464} {RNA1310_16276} {RNA815_4041.1}
3.	MligTC455_21060	340	7.09	Mlig455_070218	Neo: - Age: - Region-enriched R5: 1.197/0.04030	PPAT	1.81	0.836	-	-	-	0.974	-	Mlig455_070218 {REF} {Length: 2514} {TRANSSPLICED} {Pfam: Glutamine amidotransferase domain [PF13522.8, score=54.9]; Glutamine amidotransferase domain [PF13537.8, score=51.4]; Phosphoribosyl transferase domain [PF00156.29, score=28.9]; Glutamine amidotransferases class-II [PF13230.8, score=21.9]} {Human: ENSG00000128059, PPAT, phosphoribosyl pyrophosphate amidotransferase, [RH, Score=533, Expect=0.0]} {Mouse: ENSMUSG00000029246, Ppat, phosphoribosyl pyrophosphate amidotransferase, [RH, Score=533, Expect=0.0]} {Dmel: FBgn0041194, Prat2, Phosphoribosylamidotransferase 2, [RH, Score=513, Expect=2e-178]} {Celegans: WBGene00011407, ppat-1, Amidophosphoribosyltransferase, [RH, Score=406, Expect=2e-137]} {Smed: dd_Smed_v6_10667_0_1, dd_Smed_v6_10667_0_1, [RH, Score=518, Expect=0.0]} {RNA1509_21632} {RNA1310_8749, RNA1509_21632} {RNA1509_21632, RNA815_5739}
4.	MligTC455_53166	216	4.5	Mlig455_040159	Neo: - Age: -	PCDH9	1.701	-	-	-	0.957	0.744	-	Mlig455_040159 {REF} {Length: 4572} {Pfam: Cadherin domain [PF00028.19, score=274.8]; Cadherin-like [PF08266.14, score=39.0]; Cadherin-like [PF16184.7, score=26.4]} {Human: ENSG00000184226, PCDH9, protocadherin 9, [RH, Score=332, Expect=1e-95]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [RH, Score=321, Expect=2e-91]; ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [RH, Score=319, Expect=9e-91]} {Mouse: ENSMUSG00000055421, Pcdh9, protocadherin 9, [RH, Score=332, Expect=1e-95]} {Dmel: FBgn0261574, kug, kugelei, [Score=216, Expect=1e-56]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=216, Expect=6e-57]} {Smed: dd_Smed_v6_17019_0_1, dd_Smed_v6_17019_0_1, [Score=285, Expect=2e-81]} {RNA1509_52268} {RNA1310_13234.1} {RNA815_20861}
5.	MligTC455_31612	226	4.71	Mlig455_035311	Neo: - Age: Up-Down-Down	PRR9	0.955	-	-	-	0.955	-	-	Mlig455_035311 {REF} {Length: 5108} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=42.7, Expect=1e-05]} {RNA1509_11174} {RNA1310_55188} {RNA815_14259}
6.	MligTC455_47133	537	11.19	Mlig455_000989, Mlig455_037599	Neo: Int S/G2/M Age: - Regeneration-enriched R6: 2.720 Regeneration-enriched BL: 2.610	CBX3	0.953	-	-	-	-	0.953	-	Mlig455_000989 {REF} {Length: 2004} {Pfam: Chromo shadow domain [PF01393.21, score=57.4]} {Human: ENSG00000122565, CBX3, chromobox 3, [Score=96.3, Expect=2e-23]; ENSG00000094916, CBX5, chromobox 5, [Score=92.4, Expect=6e-22]} {Mouse: ENSMUSG00000029836, Cbx3, chromobox 3, [Score=96.3, Expect=1e-23]; ENSMUSG00000009575, Cbx5, chromobox 5, [Score=92.0, Expect=6e-22]} {Dmel: FBgn0030082, HP1b, Heterochromatin Protein 1b, [Score=76.6, Expect=5e-16]} {Smed: dd_Smed_v6_928_0_1, dd_Smed_v6_928_0_1, [Score=86.3, Expect=7e-20]} {RNA1509_46621} {RNA1310_50589} {RNA815_44911} Mlig455_037599 {REF} {Length: 1824} {TRANSSPLICED} {Pfam: Chromo shadow domain [PF01393.21, score=57.4]} {Human: ENSG00000122565, CBX3, chromobox 3, [Score=96.3, Expect=2e-23]; ENSG00000094916, CBX5, chromobox 5, [Score=92.4, Expect=6e-22]} {Mouse: ENSMUSG00000029836, Cbx3, chromobox 3, [Score=96.3, Expect=1e-23]; ENSMUSG00000009575, Cbx5, chromobox 5, [Score=92.0, Expect=6e-22]} {Dmel: FBgn0030082, HP1b, Heterochromatin Protein 1b, [Score=76.6, Expect=5e-16]} {Smed: dd_Smed_v6_928_0_1, dd_Smed_v6_928_0_1, [Score=86.3, Expect=7e-20]} {RNA1509_46621} {RNA1310_50589, RNA1509_46621} {RNA1509_46621, RNA815_44911}
7.	MligTC455_39614	347	7.22	Mlig455_060077	Neo: - Age: -		0.951	-	-	-	-	0.951	-	Mlig455_060077 {REF} {Length: 243} {RNA1509_44026} {RNA1310_29358} {RNA815_40687}

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