TomoSeq data search

Data search

Results for MligTC455_40773

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_40773

169

3.51

Mlig455_029915

Neo: -

Age: Up-Up-Down

Mlig455_029915 {REF} {Length: 1588} {Mouse: ENSMUSG00000095663, Gm2310, predicted gene 2310, [Score=71.6, Expect=3e-14]} {RNA1509_17717} {RNA1310_10918.1} {RNA815_53483}

Cumulative graph for MligTC455_40773

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	1.109	2.665	0.56751	1.00000
RegionR2	-1.482	2.665	0.99346	1.00000
RegionR3	2.133	2.665	0.00251	0.05880
RegionR4	1.47	2.665	0.09446	0.29614
RegionR5	1.477	2.665	0.02837	0.12470
RegionR6	0.942	2.665	0.21899	0.79888
RegionR7	-5.089	2.665	0.03983	0.38151
RegionR8	-0.56	2.665	0.93858	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-5.701	2.665	0.33605	1.00000
RegenerationR2	0.575	2.665	0.49037	0.86768
RegenerationR3	-1.119	2.665	0.06940	0.44210
RegenerationR4	-0.36	2.665	0.58363	0.90645
RegenerationR5	-0.233	2.665	0.67615	0.94326
RegenerationR6	0.42	2.665	0.52795	0.82539
RegenerationBL	2.163	2.665	0.10519	0.38293
RegenerationTP	1.673	2.665	0.38371	0.81785

Genes with expression patterns similar to MligTC455_40773

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_40773	169	3.51	Mlig455_029915	Neo: - Age: Up-Up-Down		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_029915 {REF} {Length: 1588} {Mouse: ENSMUSG00000095663, Gm2310, predicted gene 2310, [Score=71.6, Expect=3e-14]} {RNA1509_17717} {RNA1310_10918.1} {RNA815_53483}
2.	MligTC455_40772	633	13.18	Mlig455_000911	Neo: - Age: Up-Down-Down Region-enriched R3: 1.927/0.00277	BEST3	4.141	-	0.813	0.714	0.852	0.964	0.798	Mlig455_000911 {REF} {Length: 2760} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=178.5]} {Human: ENSG00000127325, BEST3, bestrophin 3, [Score=159, Expect=2e-41]} {Mouse: ENSMUSG00000020169, Best3, bestrophin 3, [Score=162, Expect=2e-42]} {Dmel: FBgn0040238, Best1, Bestrophin 1, [Score=190, Expect=3e-52]} {Celegans: WBGene00015286, best-3, Bestrophin homolog, [Score=160, Expect=2e-42]} {Smed: dd_Smed_v6_2084_0_1, dd_Smed_v6_2084_0_1, [RH, Score=322, Expect=8e-105]} {RNA1509_44952} {RNA1310_13111} {RNA815_15310}
3.	MligTC455_29130	289	6.02	Mlig455_009307	Neo: - Age: -		2.521	-	-	0.983	0.705	0.833	-	Mlig455_009307 {REF} {Length: 1068} {RNA1509_54671} {RNA1310_20601} {RNA815_6311.1}
4.	MligTC455_49468	3574	74.46	Mlig455_015846, Mlig455_016064	Neo: - Age: logFC(26M/2M)=0.226 Region-enriched R3: 1.620/0.01404	SRR	1.769	-	-	-	0.819	0.950	-	Mlig455_015846 {REF} {Length: 2263} {Pfam: Pyridoxal-phosphate dependent enzyme [PF00291.27, score=269.4]; ACT domain [PF01842.27, score=26.5]} {Human: ENSG00000167720, SRR, serine racemase, [Score=169, Expect=3e-47]} {Mouse: ENSMUSG00000001323, Srr, serine racemase, [Score=139, Expect=9e-37]} {Dmel: FBgn0037684, CG8129, [RH, Score=469, Expect=3e-162]} {Celegans: WBGene00010456, K01C8.1, [RH, Score=484, Expect=8e-168]} {Smed: dd_Smed_v6_6737_0_1, dd_Smed_v6_6737_0_1, [Score=555, Expect=0.0]} {RNA1509_3329} {RNA1310_12273.1} {RNA815_4112.1} Mlig455_016064 {REF} {Length: 2342} {Pfam: Pyridoxal-phosphate dependent enzyme [PF00291.27, score=269.6]; ACT domain [PF01842.27, score=26.5]} {Human: ENSG00000167720, SRR, serine racemase, [Score=167, Expect=6e-47]} {Mouse: ENSMUSG00000001323, Srr, serine racemase, [Score=139, Expect=2e-36]} {Dmel: FBgn0037684, CG8129, [RH, Score=468, Expect=7e-162]} {Celegans: WBGene00010456, K01C8.1, [RH, Score=486, Expect=1e-168]} {Smed: dd_Smed_v6_6737_0_1, dd_Smed_v6_6737_0_1, [Score=558, Expect=0.0]} {RNA1509_3329} {RNA1310_12273.1, RNA1509_3329} {RNA1509_3329, RNA815_4112.1}
5.	MligTC455_24995	360	7.5	Mlig455_018552	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.349	CYP3A4	0.977	-	-	-	-	0.977	-	Mlig455_018552 {REF} {Length: 2896} {Pfam: Cytochrome P450 [PF00067.24, score=324.3]; Dynein light chain type 1 [PF01221.20, score=42.9]} {Human: ENSG00000160868, CYP3A4, cytochrome P450 family 3 subfamily A member 4, [RH, Score=281, Expect=1e-85]; ENSG00000021461, CYP3A43, cytochrome P450 family 3 subfamily A member 43, [RH, Score=276, Expect=7e-84]} {Mouse: ENSMUSG00000029727, Cyp3a13, cytochrome P450, family 3, subfamily a, polypeptide 13, [Score=286, Expect=1e-87]; ENSMUSG00000056035, Cyp3a11, cytochrome P450, family 3, subfamily a, polypeptide 11, [Score=279, Expect=3e-85]; ENSMUSG00000038656, Cyp3a16, cytochrome P450, family 3, subfamily a, polypeptide 16, [Score=274, Expect=2e-83]; ENSMUSG00000075552, Cyp3a41b, cytochrome P450, family 3, subfamily a, polypeptide 41B, [Score=273, Expect=9e-83]; ENSMUSG00000075551, Cyp3a41a, cytochrome P450, family 3, subfamily a, polypeptide 41A, [Score=273, Expect=9e-83]} {Dmel: FBgn0000473, Cyp6a2, Cytochrome P450-6a2, [RH, Score=241, Expect=4e-71]} {Celegans: WBGene00011676, cyp-13A2, Putative cytochrome P450 CYP13A2, [Score=196, Expect=9e-55]} {Smed: dd_Smed_v6_4319_0_1, dd_Smed_v6_4319_0_1, [Score=309, Expect=8e-97]} {RNA1509_25480} {RNA1310_14452} {RNA815_6310}
6.	MligTC455_26534	853	17.77	Mlig455_028594, Mlig455_028610, Mlig455_056924	Neo: - Age: logFC(26M/2M)=0.331 Region-enriched R1: 3.804/0.04788 Region-enriched R4: 2.379/0.01029		0.975	-	-	-	0.975	-	-	Mlig455_028594 {REF} {Length: 2591} {TRANSSPLICED} {Pfam: Guanine nucleotide exchange factor synembryn [PF10165.11, score=17.7]} {RNA1509_38508} {RNA1310_18940} {RNA815_4977} Mlig455_028610 {REF} {Length: 3011} {TRANSSPLICED} {Pfam: Guanine nucleotide exchange factor synembryn [PF10165.11, score=55.9]} {RNA1509_37009} {RNA1310_10694.2} {RNA815_4977} Mlig455_056924 {REF} {Length: 2852} {TRANSSPLICED} {Pfam: Guanine nucleotide exchange factor synembryn [PF10165.11, score=46.0]} {RNA1509_37009} {RNA1310_18940} {RNA815_4977}
7.	MligTC455_47403	87	1.81	Mlig455_046383	Neo: - Age: Up-Down-Down Region-enriched R3: 3.211/0.02444		0.968	-	-	-	0.968	-	-	Mlig455_046383 {REF} {Length: 441} {RNA1509_52911} {RNA1310_85828.2, RNA1509_52911} {RNA1509_52911, RNA815_44050}
8.	MligTC455_20726	1772	36.91	Mlig455_035274	Neo: - Age: - Region-enriched R3: 2.119/0.00009	SLC1A6	0.964	-	-	-	-	0.964	-	Mlig455_035274 {REF} {Length: 2086} {Pfam: Sodium:dicarboxylate symporter family [PF00375.20, score=422.3]} {Human: ENSG00000105143, SLC1A6, solute carrier family 1 member 6, [RH, Score=462, Expect=9e-158]} {Mouse: ENSMUSG00000024935, Slc1a1, solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1, [RH, Score=457, Expect=3e-156]; ENSMUSG00000005357, Slc1a6, solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6, [RH, Score=452, Expect=6e-154]} {Dmel: FBgn0026439, Eaat1, Excitatory amino acid transporter 1, [RH, Score=373, Expect=4e-124]} {Celegans: WBGene00001620, glt-1, Excitatory amino acid transporter, [Score=421, Expect=6e-143]} {Smed: dd_Smed_v6_1106_0_1, dd_Smed_v6_1106_0_1, [Score=427, Expect=2e-145]} {RNA1509_5272, RNA1509_57758, RNA1509_7401} {RNA1310_8553.1, RNA1509_5272, RNA1509_57758} {RNA1509_5272, RNA1509_57758, RNA815_2974.1}
9.	MligTC455_40901	265	5.52	Mlig455_034098	Neo: Int S/G2/M Age: Up-Down-Down, logFC(26M/2M)=-0.202		0.964	-	-	-	0.964	-	-	Mlig455_034098 {REF} {Length: 3665} {TRANSSPLICED} {Pfam: Shugoshin C terminus [PF07557.13, score=36.7]} {RNA1509_15251, RNA1509_41036, RNA1509_45335} {RNA1310_22742.1, RNA1509_15251, RNA1509_41036, RNA1509_45335} {RNA1509_15251, RNA1509_41036, RNA1509_45335, RNA815_8551.1}
10.	MligTC455_24996	342	7.13	Mlig455_019421	Neo: - Age: -	CYP3A5	0.963	-	-	-	-	0.963	-	Mlig455_019421 {REF} {Length: 1953} {Pfam: Cytochrome P450 [PF00067.24, score=312.8]} {Human: ENSG00000106258, CYP3A5, cytochrome P450 family 3 subfamily A member 5, [Score=265, Expect=2e-82]; ENSG00000160868, CYP3A4, cytochrome P450 family 3 subfamily A member 4, [Score=261, Expect=7e-81]; ENSG00000021461, CYP3A43, cytochrome P450 family 3 subfamily A member 43, [Score=261, Expect=5e-81]; ENSG00000160870, CYP3A7, cytochrome P450 family 3 subfamily A member 7, [Score=256, Expect=3e-79]; ENSG00000282301, CYP3A7-CYP3A51P, CYP3A7-CYP3A51P readthrough, [Score=255, Expect=2e-78]} {Mouse: ENSMUSG00000029727, Cyp3a13, cytochrome P450, family 3, subfamily a, polypeptide 13, [Score=265, Expect=9e-83]; ENSMUSG00000056035, Cyp3a11, cytochrome P450, family 3, subfamily a, polypeptide 11, [Score=261, Expect=6e-81]; ENSMUSG00000038656, Cyp3a16, cytochrome P450, family 3, subfamily a, polypeptide 16, [Score=255, Expect=8e-79]; ENSMUSG00000075551, Cyp3a41a, cytochrome P450, family 3, subfamily a, polypeptide 41A, [Score=253, Expect=3e-78]; ENSMUSG00000029630, Cyp3a25, cytochrome P450, family 3, subfamily a, polypeptide 25, [Score=253, Expect=3e-78]; ENSMUSG00000075552, Cyp3a41b, cytochrome P450, family 3, subfamily a, polypeptide 41B, [Score=253, Expect=3e-78]} {Dmel: FBgn0013772, Cyp6a8, Cytochrome P450-6a8, [RH, Score=224, Expect=5e-67]} {Celegans: WBGene00011676, cyp-13A2, Putative cytochrome P450 CYP13A2, [Score=185, Expect=2e-52]} {Smed: dd_Smed_v6_4319_0_1, dd_Smed_v6_4319_0_1, [Score=296, Expect=7e-95]} {RNA1509_49442} {RNA1310_14452} {RNA815_6310}
11.	MligTC455_49667	263	5.48	Mlig455_002359	Neo: - Age: Down-Down-Up, logFC(26M/2M)=-0.508		0.961	-	-	-	0.961	-	-	Mlig455_002359 {REF} {Length: 1226} {Pfam: Thioredoxin [PF00085.22, score=31.5]} {RNA1509_12738} {RNA1310_35985.1} {RNA815_17683}
12.	MligTC455_51058	1498	31.2	Mlig455_001170, Mlig455_070585	Neo: Int S/G2/M Age: - Region-enriched R4: 1.529/0.00001		0.961	-	-	-	-	0.961	-	Mlig455_001170 {REF} {Length: 1260} {TRANSSPLICED} {RNA1509_27293, RNA1509_31536, RNA1509_40612, RNA1509_59269} {RNA1310_18620.1, RNA1509_31536, RNA1509_40612, RNA1509_59269} {RNA1509_31536, RNA1509_40612, RNA1509_59269, RNA815_14772.1} Mlig455_070585 {REF} {Length: 1259} {TRANSSPLICED} {RNA1509_27293, RNA1509_28580} {RNA1310_18620.1, RNA1509_27293, RNA1509_28580} {RNA1509_27293, RNA1509_28580, RNA815_14772.1}
13.	MligTC455_51057	721	15.03	Mlig455_001327	Neo: - Age: - Region-enriched R4: 1.518/0.00027		0.955	-	-	-	-	0.955	-	Mlig455_001327 {REF} {Length: 1262} {TRANSSPLICED} {RNA1509_27293} {RNA1310_18620.1} {RNA815_14772.1}
14.	MligTC455_50270	1381	28.78	Mlig455_043519	Neo: - Age: logFC(26M/2M)=-0.250 Regeneration-upregulated R5: 1.198 Regeneration-enriched R5: 1.198	PTK7	0.954	-	-	-	0.954	-	-	Mlig455_043519 {REF} {Length: 5584} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=169.2]; Immunoglobulin domain [PF13927.8, score=142.9]; Immunoglobulin I-set domain [PF07679.18, score=110.6]; Protein kinase domain [PF00069.27, score=107.3]; Immunoglobulin domain [PF00047.27, score=91.5]; Immunoglobulin V-set domain [PF07686.19, score=76.1]; Immunoglobulin domain [PF13895.8, score=68.2]; Kinase-like [PF14531.8, score=19.3]; Transmembrane protein 51 [PF15345.8, score=19.0]} {Human: ENSG00000112655, PTK7, protein tyrosine kinase 7 (inactive), [Score=152, Expect=8e-37]} {Mouse: ENSMUSG00000023972, Ptk7, PTK7 protein tyrosine kinase 7, [Score=147, Expect=4e-35]} {Dmel: FBgn0003502, Btk29A, Btk family kinase at 29A, [Score=137, Expect=8e-34]} {Celegans: WBGene00000812, csk-1, Tyrosine-protein kinase csk-1, [Score=127, Expect=4e-30]} {Smed: dd_Smed_v6_6999_0_1, dd_Smed_v6_6999_0_1, [RH, Score=329, Expect=8e-94]} {RNA1509_41670, RNA1509_4351} {RNA1310_1753.1, RNA1509_41670} {RNA1509_41670, RNA815_731}
15.	MligTC455_17936	83	1.72	Mlig455_015624	Neo: - Age: -		0.953	-	-	-	0.953	-	-	Mlig455_015624 {REF} {Length: 700} {RNA1509_39987} {RNA1310_11976} {RNA815_1768.1}
16.	MligTC455_22814	692	14.41	Mlig455_038786, Mlig455_038794	Neo: Int S/G2/M Age: - Region-enriched R5: 1.342/0.01253	PDCD2	0.953	-	-	-	0.953	-	-	Mlig455_038786 {REF} {Length: 2953} {Pfam: Programmed cell death protein 2, C-terminal putative domain [PF04194.15, score=101.8]} {Human: ENSG00000071994, PDCD2, programmed cell death 2, [RH, Score=89.7, Expect=3e-19]} {Mouse: ENSMUSG00000014771, Pdcd2, programmed cell death 2, [RH, Score=106, Expect=1e-25]} {Dmel: FBgn0021875, Zfrp8, Zinc finger protein RP-8, [RH, Score=110, Expect=1e-26]} {Celegans: WBGene00011116, pdcd-2, Vacuolar ATPase assembly integral membrane protein VMA21 homolog, [RH, Score=83.6, Expect=3e-17]} {RNA1509_23536, RNA1509_24796, RNA1509_31309, RNA1509_37120, RNA1509_49435, RNA1509_50456} {RNA1310_18277, RNA1509_23536, RNA1509_24796, RNA1509_31309, RNA1509_37120, RNA1509_49435, RNA1509_50456} {RNA1509_23536, RNA1509_24796, RNA1509_31309, RNA1509_37120, RNA1509_49435, RNA1509_50456, RNA815_12771} Mlig455_038794 {REF} {Length: 2652} {Pfam: Programmed cell death protein 2, C-terminal putative domain [PF04194.15, score=101.4]} {Human: ENSG00000071994, PDCD2, programmed cell death 2, [RH, Score=89.0, Expect=5e-19]} {Mouse: ENSMUSG00000014771, Pdcd2, programmed cell death 2, [RH, Score=104, Expect=7e-25]} {Dmel: FBgn0021875, Zfrp8, Zinc finger protein RP-8, [RH, Score=107, Expect=2e-25]} {Celegans: WBGene00011116, pdcd-2, Vacuolar ATPase assembly integral membrane protein VMA21 homolog, [RH, Score=83.2, Expect=4e-17]} {RNA1509_24796, RNA1509_56227} {RNA1310_18277, RNA1509_56227} {RNA1509_56227, RNA815_12771}
17.	MligTC455_49658	3392	70.66	Mlig455_011590	Neo: - Age: - Region-enriched R3: 1.949/0.00002		0.95	-	-	-	-	0.950	-	Mlig455_011590 {REF} {Length: 2376} {RNA1509_3964} {RNA1310_32368} {RNA815_14237.1}

Berezikov Lab - 2020-2021 © ERIBA