M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_51058

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_51058 1498 31.20 Mlig455_001170, Mlig455_070585

Neo: Int S/G2/M

Age: -

Region-enriched R4: 1.529/0.00001

Mlig455_001170 {REF} {Length: 1260} {TRANSSPLICED} {RNA1509_27293, RNA1509_31536, RNA1509_40612, RNA1509_59269} {RNA1310_18620.1, RNA1509_31536, RNA1509_40612, RNA1509_59269} {RNA1509_31536, RNA1509_40612, RNA1509_59269, RNA815_14772.1}

Mlig455_070585 {REF} {Length: 1259} {TRANSSPLICED} {RNA1509_27293, RNA1509_28580} {RNA1310_18620.1, RNA1509_27293, RNA1509_28580} {RNA1509_27293, RNA1509_28580, RNA815_14772.1}

Cumulative graph for MligTC455_51058

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.581 5.235 0.40269 1.00000
RegionR2 -0.702 5.235 0.05144 0.27119
RegionR3 -0.092 5.235 0.73605 1.00000
RegionR4 1.529 5.235 0.00000 0.00001
RegionR5 0.632 5.235 0.00673 0.04331
RegionR6 -0.058 5.235 0.83675 1.00000
RegionR7 -0.917 5.235 0.02381 0.28864
RegionR8 -0.973 5.235 0.05435 0.45490

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.355 5.235 0.07793 0.76975
RegenerationR2 -0.067 5.235 0.82981 0.99781
RegenerationR3 0.421 5.235 0.18402 0.62016
RegenerationR4 -0.483 5.235 0.11519 0.51841
RegenerationR5 0.153 5.235 0.58132 0.90094
RegenerationR6 0.883 5.235 0.00439 0.07980
RegenerationBL 1.047 5.235 0.00690 0.08069
RegenerationTP 0.533 5.235 0.25485 0.70245


Genes with expression patterns similar to MligTC455_51058

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_51058 1498 31.2 Mlig455_001170, Mlig455_070585

Neo: Int S/G2/M

Age: -

Region-enriched R4: 1.529/0.00001

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_001170 {REF} {Length: 1260} {TRANSSPLICED} {RNA1509_27293, RNA1509_31536, RNA1509_40612, RNA1509_59269} {RNA1310_18620.1, RNA1509_31536, RNA1509_40612, RNA1509_59269} {RNA1509_31536, RNA1509_40612, RNA1509_59269, RNA815_14772.1}

Mlig455_070585 {REF} {Length: 1259} {TRANSSPLICED} {RNA1509_27293, RNA1509_28580} {RNA1310_18620.1, RNA1509_27293, RNA1509_28580} {RNA1509_27293, RNA1509_28580, RNA815_14772.1}
2. MligTC455_51057 721 15.03 Mlig455_001327

Neo: -

Age: -

Region-enriched R4: 1.518/0.00027

 5.919 0.941 1.000 0.998 0.995 0.988 0.997 Mlig455_001327 {REF} {Length: 1262} {TRANSSPLICED} {RNA1509_27293} {RNA1310_18620.1} {RNA815_14772.1}
3. MligTC455_40273 3609 75.19 Mlig455_019364

Neo: -

Age: logFC(26M/2M)=0.159

 ACADVL 2.475 - - - 0.951 0.708 0.816 Mlig455_019364 {REF} {Length: 2348} {TRANSSPLICED} {Pfam: Acyl-CoA dehydrogenase, C-terminal domain [PF00441.26, score=135.5]; Acyl-CoA dehydrogenase, N-terminal domain [PF02771.18, score=81.9]; Acyl-CoA dehydrogenase, middle domain [PF02770.21, score=79.1]; Acyl-CoA dehydrogenase, C-terminal domain [PF08028.13, score=42.9]} {Human: ENSG00000072778, ACADVL, acyl-CoA dehydrogenase very long chain, [RH, Score=681, Expect=0.0]} {Mouse: ENSMUSG00000018574, Acadvl, acyl-Coenzyme A dehydrogenase, very long chain, [RH, Score=672, Expect=0.0]} {Dmel: FBgn0034432, CG7461, [RH, Score=635, Expect=0.0]} {Celegans: WBGene00017125, acdh-12, Acyl CoA DeHydrogenase, [RH, Score=587, Expect=0.0]} {Smed: dd_Smed_v6_2663_0_1, dd_Smed_v6_2663_0_1, [RH, Score=653, Expect=0.0]} {RNA1509_1423} {RNA1310_8126.1} {RNA815_2564.1}
4. MligTC455_46160 2757 57.44 Mlig455_025985

Neo: Neoblast

Age: Down-Up-Up, logFC(26M/2M)=0.238

Region-enriched R4: 1.014/0.00037

Regeneration-upregulated BL: 1.035

Regeneration-enriched BL: 1.035

 MRPL12 1.829 - - - 0.957 - 0.872 Mlig455_025985 {REF} {Length: 969} {TRANSSPLICED} {Pfam: Ribosomal protein L7/L12 C-terminal domain [PF00542.21, score=61.3]} {Human: ENSG00000262814, MRPL12, mitochondrial ribosomal protein L12, [RH, Score=72.4, Expect=3e-15]} {Mouse: ENSMUSG00000039640, Mrpl12, mitochondrial ribosomal protein L12, [RH, Score=72.0, Expect=3e-15]} {Dmel: FBgn0011787, mRpL12, mitochondrial ribosomal protein L12, [RH, Score=96.7, Expect=7e-25]} {Celegans: WBGene00012361, mrpl-12, Mitochondrial Ribosomal Protein, Large, [RH, Score=90.9, Expect=6e-23]} {Smed: dd_Smed_v6_2166_0_1, dd_Smed_v6_2166_0_1, [RH, Score=99.4, Expect=2e-26]} {RNA1509_5207} {RNA1310_31709, RNA1509_5207} {RNA1509_5207, RNA815_16739}
5. MligTC455_42859 2083 43.39 Mlig455_008722

Neo: Int S/G2/M

Age: Down-Up-Up

 MRPL4 1.712 - - - 0.751 - 0.961 Mlig455_008722 {REF} {Length: 1235} {TRANSSPLICED} {Pfam: Ribosomal protein L4/L1 family [PF00573.24, score=113.5]} {Human: ENSG00000105364, MRPL4, mitochondrial ribosomal protein L4, [RH, Score=176, Expect=2e-52]} {Mouse: ENSMUSG00000003299, Mrpl4, mitochondrial ribosomal protein L4, [RH, Score=178, Expect=2e-53]} {Dmel: FBgn0001995, mRpL4, mitochondrial ribosomal protein L4, [RH, Score=207, Expect=7e-65]} {Celegans: WBGene00020717, mrpl-4, Mitochondrial Ribosomal Protein, Large, [RH, Score=177, Expect=4e-53]} {Smed: dd_Smed_v6_4353_0_1, dd_Smed_v6_4353_0_1, [RH, Score=243, Expect=9e-79]} {RNA1509_15601} {RNA1310_28032, RNA1509_15601} {RNA1509_15601, RNA815_15145}
6. MligTC455_18852 3800 79.16 Mlig455_003950, Mlig455_005977

Neo: Int S/G2/M

Age: Down-Up-Down

Region-enriched R5: 1.873/0.00000
Region-enriched R4: 1.365/0.00002

 MRPL45 0.966 - - - - - 0.966

Mlig455_003950 {REF} {Length: 1105} {TRANSSPLICED} {Human: ENSG00000278845, MRPL45, mitochondrial ribosomal protein L45, [RH, Score=62.0, Expect=2e-10]; ENSG00000277936, MRPL45, mitochondrial ribosomal protein L45, [RH, Score=62.0, Expect=2e-10]} {Mouse: ENSMUSG00000018882, Mrpl45, mitochondrial ribosomal protein L45, [RH, Score=57.8, Expect=4e-09]} {Dmel: FBgn0263863, mRpL45, mitochondrial ribosomal protein L45, [RH, Score=73.9, Expect=1e-14]} {Celegans: WBGene00022493, mrpl-45, Probable 39S ribosomal protein L45, mitochondrial, [RH, Score=75.1, Expect=3e-15]} {Smed: dd_Smed_v6_2740_0_1, dd_Smed_v6_2740_0_1, [RH, Score=64.3, Expect=8e-12]} {RNA1509_16114} {RNA1310_30839} {RNA815_14208}

Mlig455_005977 {REF} {Length: 1105} {TRANSSPLICED} {Human: ENSG00000277936, MRPL45, mitochondrial ribosomal protein L45, [RH, Score=62.0, Expect=2e-10]; ENSG00000278845, MRPL45, mitochondrial ribosomal protein L45, [RH, Score=62.0, Expect=2e-10]} {Mouse: ENSMUSG00000018882, Mrpl45, mitochondrial ribosomal protein L45, [RH, Score=57.8, Expect=3e-09]} {Dmel: FBgn0263863, mRpL45, mitochondrial ribosomal protein L45, [RH, Score=73.2, Expect=2e-14]} {Celegans: WBGene00022493, mrpl-45, Probable 39S ribosomal protein L45, mitochondrial, [RH, Score=75.5, Expect=3e-15]} {Smed: dd_Smed_v6_2740_0_1, dd_Smed_v6_2740_0_1, [RH, Score=65.9, Expect=2e-12]} {RNA1509_16114} {RNA1310_30839} {RNA815_14208}
7. MligTC455_17574 150 3.12 Mlig455_068350

Neo: -

Age: Down-Up-Down

 0.963 - - - - - 0.963 Mlig455_068350 {REF} {Length: 353} {TRANSSPLICED} {Pfam: PET assembly of cytochrome c oxidase, mitochondrial [PF15786.7, score=45.7]} {RNA1509_37276} {RNA1310_21851} {RNA815_12138.1}
8. MligTC455_40773 169 3.51 Mlig455_029915

Neo: -

Age: Up-Up-Down

 0.961 - - - - 0.961 - Mlig455_029915 {REF} {Length: 1588} {Mouse: ENSMUSG00000095663, Gm2310, predicted gene 2310, [Score=71.6, Expect=3e-14]} {RNA1509_17717} {RNA1310_10918.1} {RNA815_53483}
9. MligTC455_18851 1893 39.44 Mlig455_003970

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=0.269

Region-enriched R5: 1.923/0.00000
Region-enriched R4: 1.440/0.00007

 MRPL45 0.959 - - - - - 0.959 Mlig455_003970 {REF} {Length: 1106} {TRANSSPLICED} {Human: ENSG00000277936, MRPL45, mitochondrial ribosomal protein L45, [RH, Score=62.0, Expect=2e-10]; ENSG00000278845, MRPL45, mitochondrial ribosomal protein L45, [RH, Score=62.0, Expect=2e-10]} {Mouse: ENSMUSG00000018882, Mrpl45, mitochondrial ribosomal protein L45, [RH, Score=57.8, Expect=3e-09]} {Dmel: FBgn0263863, mRpL45, mitochondrial ribosomal protein L45, [RH, Score=74.3, Expect=9e-15]} {Celegans: WBGene00022493, mrpl-45, Probable 39S ribosomal protein L45, mitochondrial, [RH, Score=75.1, Expect=3e-15]} {Smed: dd_Smed_v6_2740_0_1, dd_Smed_v6_2740_0_1, [RH, Score=64.7, Expect=6e-12]} {RNA1509_16114, RNA1509_59577, RNA1509_6788} {RNA1310_30839, RNA1509_16114, RNA1509_59577, RNA1509_6788} {RNA1509_16114, RNA1509_59577, RNA1509_6788, RNA815_14208}
10. MligTC455_53624 1813 37.76 Mlig455_008467, Mlig455_009918

Neo: -

Age: logFC(26M/2M)=0.449

Region-enriched R5: 1.585/0.00006
Region-enriched R4: 1.345/0.01281

 0.959 - - - - - 0.959

Mlig455_008467 {REF} {Length: 838} {TRANSSPLICED} {Pfam: 3' exoribonuclease family, domain 1 [PF01138.23, score=32.5]} {RNA1509_17896} {RNA1310_42888.1} {RNA815_22192}

Mlig455_009918 {REF} {Length: 840} {TRANSSPLICED} {Pfam: 3' exoribonuclease family, domain 1 [PF01138.23, score=32.5]} {RNA1509_17896} {RNA1310_42888.1, RNA1509_17896} {RNA1509_17896, RNA815_22192}
11. MligTC455_42084 1828 38.07 Mlig455_001444

Neo: Int S/G2/M

Age: -

 ETF1 0.957 - - - - 0.957 - Mlig455_001444 {REF} {Length: 3397} {TRANSSPLICED} {Pfam: eRF1 domain 2 [PF03464.17, score=158.3]; eRF1 domain 3 [PF03465.17, score=129.0]; eRF1 domain 1 [PF03463.17, score=51.5]; Bacterial archaeo-eukaryotic release factor family 10 [PF18854.3, score=34.5]; Actinobacteria/chloroflexi VLRF1 release factor [PF18859.3, score=32.8]} {Human: ENSG00000120705, ETF1, eukaryotic translation termination factor 1, [RH, Score=736, Expect=0.0]} {Mouse: ENSMUSG00000024360, Etf1, eukaryotic translation termination factor 1, [RH, Score=736, Expect=0.0]} {Dmel: FBgn0036974, eRF1, eukaryotic translation release factor 1, [RH, Score=746, Expect=0.0]} {Celegans: WBGene00020269, erfa-1, Eukaryotic peptide chain release factor subunit 1, [RH, Score=680, Expect=0.0]} {Smed: dd_Smed_v6_5017_0_1, dd_Smed_v6_5017_0_1, [RH, Score=673, Expect=0.0]} {RNA1509_1928, RNA1509_30112} {RNA1310_2584.2, RNA1509_1928, RNA1509_30112} {RNA1509_1928, RNA1509_30112, RNA815_1129.1}
12. MligTC455_46300 592 12.33 Mlig455_029207

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.553/0.00026

 0.954 - - 0.954 - - - Mlig455_029207 {REF} {Length: 1314} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_30245, RNA1509_35999, RNA1509_52366} {RNA1310_3145, RNA1509_30245, RNA1509_35999, RNA1509_52366} {RNA1509_30245, RNA1509_35999, RNA1509_52366, RNA815_27045}
13. MligTC455_35650 2002 41.7 Mlig455_046752

Neo: -

Age: -

 CALR 0.951 - - - - 0.951 - Mlig455_046752 {REF} {Length: 1713} {Pfam: Calreticulin family [PF00262.20, score=28.8]} {Human: ENSG00000179218, CALR, calreticulin, [Score=98.2, Expect=1e-25]} {Mouse: ENSMUSG00000003814, Calr, calreticulin, [Score=87.0, Expect=6e-20]} {Dmel: FBgn0005585, Calr, Calreticulin, [Score=102, Expect=8e-26]} {Celegans: WBGene00000802, crt-1, Calreticulin, [Score=79.7, Expect=1e-17]} {Smed: dd_Smed_v6_220_0_4, dd_Smed_v6_220_0_4, [Score=115, Expect=1e-30]} {RNA1509_1668} {RNA1310_7869} {RNA815_3522.1}
14. MligTC455_43966 972 20.25 Mlig455_070780

Neo: Int S/G2/M

Age: -

 EMC10 0.951 - - - - - 0.951 Mlig455_070780 {REF} {Length: 876} {TRANSSPLICED} {Human: ENSG00000161671, EMC10, ER membrane protein complex subunit 10, [RH, Score=75.5, Expect=1e-15]} {Mouse: ENSMUSG00000008140, Emc10, ER membrane protein complex subunit 10, [RH, Score=79.0, Expect=2e-17]} {Dmel: FBgn0052441, CG32441, [RH, Score=64.7, Expect=1e-12]} {Celegans: WBGene00012829, Y43F8C.7, [RH, Score=62.4, Expect=8e-12]} {Smed: dd_Smed_v6_2594_0_1, dd_Smed_v6_2594_0_1, [RH, Score=89.7, Expect=5e-22]} {RNA1509_27493, RNA1509_41782} {RNA1310_9560, RNA1509_41782} {RNA1509_41782, RNA815_13374}
15. MligTC455_49239 254 5.29 Mlig455_002495

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_002495 {REF} {Length: 1078} {NoTransDecoderORF} {RNA1509_1763} {RNA1310_14034.1} {RNA815_4894}
16. MligTC455_28348 253 5.27 Mlig455_062624

Neo: -

Age: -

Region-enriched R4: 2.660/0.00291

 0.95 - - - - 0.950 - Mlig455_062624 {REF} {Length: 3425} {TRANSSPLICED} {RNA1509_26302} {RNA1310_7764} {RNA815_10526}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA