Data search
Results for MligTC455_41754
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_41754 | 607 | 12.65 | Mlig455_015696 | Neo: - Age: logFC(26M/2M)=0.671 |
RBBP5 | Mlig455_015696 {REF} {Length: 1966} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=51.9]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=36.0]} {Human: ENSG00000117222, RBBP5, RB binding protein 5, histone lysine methyltransferase complex subunit, [RH, Score=558, Expect=0.0]} {Mouse: ENSMUSG00000026439, Rbbp5, retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit, [RH, Score=558, Expect=0.0]} {Dmel: FBgn0036973, Rbbp5, Retinoblastoma binding protein 5, [RH, Score=562, Expect=0.0]} {Celegans: WBGene00017683, rbbp-5, Retinoblastoma-binding protein homolog 5, [RH, Score=300, Expect=3e-96]} {Smed: dd_Smed_v6_4897_0_1, dd_Smed_v6_4897_0_1, [RH, Score=525, Expect=0.0]} {RNA1509_24461} {RNA1310_14133} {RNA815_5169} |
Cumulative graph for MligTC455_41754
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | 0.576 | 3.913 | 0.63015 | 1.00000 | |
| RegionR2 | -0.035 | 3.913 | 0.95075 | 1.00000 | |
| RegionR3 | -0.222 | 3.913 | 0.62979 | 1.00000 | |
| RegionR4 | 0.833 | 3.913 | 0.09141 | 0.28947 | |
| RegionR5 | 0.458 | 3.913 | 0.24155 | 0.55346 | |
| RegionR6 | -0.09 | 3.913 | 0.84779 | 1.00000 | |
| RegionR7 | 0.005 | 3.913 | 0.99051 | 1.00000 | |
| RegionR8 | -1.525 | 3.913 | 0.13877 | 0.68066 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 1.2 | 3.913 | 0.31955 | 1.00000 | |
| RegenerationR2 | 0.269 | 3.913 | 0.52563 | 0.88215 | |
| RegenerationR3 | 0.145 | 3.913 | 0.75988 | 0.96773 | |
| RegenerationR4 | -0.199 | 3.913 | 0.66806 | 0.94169 | |
| RegenerationR5 | 0.223 | 3.913 | 0.60081 | 0.91031 | |
| RegenerationR6 | 0.46 | 3.913 | 0.33428 | 0.68046 | |
| RegenerationBL | 0.195 | 3.913 | 0.76919 | 1.00000 | |
| RegenerationTP | 0.954 | 3.913 | 0.19215 | 0.63032 |
Genes with expression patterns similar to MligTC455_41754
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_41754 | 607 | 12.65 | Mlig455_015696 | Neo: - Age: logFC(26M/2M)=0.671 |
RBBP5 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_015696 {REF} {Length: 1966} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=51.9]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=36.0]} {Human: ENSG00000117222, RBBP5, RB binding protein 5, histone lysine methyltransferase complex subunit, [RH, Score=558, Expect=0.0]} {Mouse: ENSMUSG00000026439, Rbbp5, retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit, [RH, Score=558, Expect=0.0]} {Dmel: FBgn0036973, Rbbp5, Retinoblastoma binding protein 5, [RH, Score=562, Expect=0.0]} {Celegans: WBGene00017683, rbbp-5, Retinoblastoma-binding protein homolog 5, [RH, Score=300, Expect=3e-96]} {Smed: dd_Smed_v6_4897_0_1, dd_Smed_v6_4897_0_1, [RH, Score=525, Expect=0.0]} {RNA1509_24461} {RNA1310_14133} {RNA815_5169} |
| 2. | MligTC455_10540 | 305 | 6.35 | Mlig455_027490 | Neo: - |
1.682 | - | - | - | - | 0.952 | 0.730 | Mlig455_027490 {REF} {Length: 877} {NoTransDecoderORF} {RNA1509_32737} {RNA1310_50694, RNA1509_32737} {RNA1509_32737, RNA815_25499} | |
| 3. | MligTC455_39672 | 865 | 18.02 | Mlig455_031961, Mlig455_032012 | Neo: - Age: - |
RAP1B, RAP2B | 0.976 | - | - | - | - | 0.976 | - | Mlig455_031961 {REF} {Length: 1982} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=181.2]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=69.5]; ADP-ribosylation factor family [PF00025.23, score=38.0]; RsgA GTPase [PF03193.18, score=26.2]; 50S ribosome-binding GTPase [PF01926.25, score=21.7]} {Human: ENSG00000127314, RAP1B, RAP1B, member of RAS oncogene family, [Score=212, Expect=2e-70]; ENSG00000181467, RAP2B, RAP2B, member of RAS oncogene family, [Score=212, Expect=2e-70]; ENSG00000116473, RAP1A, RAP1A, member of RAS oncogene family, [Score=207, Expect=3e-68]; ENSG00000123728, RAP2C, RAP2C, member of RAS oncogene family, [Score=207, Expect=2e-68]; ENSG00000125249, RAP2A, RAP2A, member of RAS oncogene family, [Score=204, Expect=3e-67]} {Mouse: ENSMUSG00000051615, Rap2a, RAS related protein 2a, [Score=213, Expect=5e-71]; ENSMUSG00000052681, Rap1b, RAS related protein 1b, [Score=212, Expect=2e-70]; ENSMUSG00000036894, Rap2b, RAP2B, member of RAS oncogene family, [Score=212, Expect=1e-70]; ENSMUSG00000050029, Rap2c, RAP2C, member of RAS oncogene family, [Score=207, Expect=1e-68]; ENSMUSG00000068798, Rap1a, RAS-related protein 1a, [Score=207, Expect=2e-68]} {Dmel: FBgn0004636, Rap1, Rap1 GTPase, [Score=206, Expect=3e-68]} {Celegans: WBGene00004308, rap-2, RAP homolog (Vertebrate Rap GTPase family), [Score=220, Expect=7e-74]} {Smed: dd_Smed_v6_1239_0_1, dd_Smed_v6_1239_0_1, [Score=204, Expect=6e-68]} {RNA1509_32276} {RNA1310_2841} {RNA815_8102} Mlig455_032012 {REF} {Length: 1925} {Pfam: Ras family [PF00071.24, score=185.0]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=72.2]; ADP-ribosylation factor family [PF00025.23, score=38.3]; RsgA GTPase [PF03193.18, score=26.7]; 50S ribosome-binding GTPase [PF01926.25, score=21.4]; Elongation factor Tu GTP binding domain [PF00009.29, score=19.7]} {Human: ENSG00000181467, RAP2B, RAP2B, member of RAS oncogene family, [Score=214, Expect=4e-71]; ENSG00000127314, RAP1B, RAP1B, member of RAS oncogene family, [Score=214, Expect=3e-71]; ENSG00000123728, RAP2C, RAP2C, member of RAS oncogene family, [Score=209, Expect=4e-69]; ENSG00000116473, RAP1A, RAP1A, member of RAS oncogene family, [Score=209, Expect=4e-69]; ENSG00000125249, RAP2A, RAP2A, member of RAS oncogene family, [Score=206, Expect=4e-68]} {Mouse: ENSMUSG00000051615, Rap2a, RAS related protein 2a, [Score=215, Expect=7e-72]; ENSMUSG00000036894, Rap2b, RAP2B, member of RAS oncogene family, [Score=214, Expect=3e-71]; ENSMUSG00000052681, Rap1b, RAS related protein 1b, [Score=214, Expect=2e-71]; ENSMUSG00000050029, Rap2c, RAP2C, member of RAS oncogene family, [Score=209, Expect=2e-69]; ENSMUSG00000068798, Rap1a, RAS-related protein 1a, [Score=209, Expect=3e-69]} {Dmel: FBgn0004636, Rap1, Rap1 GTPase, [Score=208, Expect=4e-69]} {Celegans: WBGene00004308, rap-2, RAP homolog (Vertebrate Rap GTPase family), [RH, Score=222, Expect=1e-74]} {Smed: dd_Smed_v6_1239_0_1, dd_Smed_v6_1239_0_1, [Score=207, Expect=9e-69]} {RNA1509_32276} {RNA1310_2841, RNA1509_32276} {RNA1509_32276, RNA815_8102} |
| 4. | MligTC455_20075 | 734 | 15.29 | Mlig455_007395, Mlig455_007492 | Neo: Irradiation Age: - Region-enriched R4: 1.214/0.01747 |
0.974 | - | - | - | - | 0.974 | - | Mlig455_007395 {REF} {Length: 2269} {TRANSSPLICED} {Pfam: Protein-only RNase P [PF16953.7, score=43.0]} {Smed: dd_Smed_v6_9514_0_2, dd_Smed_v6_9514_0_2, [RH, Score=52.4, Expect=7e-07]} {RNA1509_38344} {RNA1310_10187.1} {RNA815_17698} Mlig455_007492 {REF} {Length: 2270} {TRANSSPLICED} {Pfam: Protein-only RNase P [PF16953.7, score=43.0]} {Smed: dd_Smed_v6_9514_0_2, dd_Smed_v6_9514_0_2, [RH, Score=52.4, Expect=6e-07]} {RNA1509_19213, RNA1509_38344} {RNA1310_10187.1, RNA1509_19213, RNA1509_38344} {RNA1509_19213, RNA1509_38344, RNA815_17698} |
|
| 5. | MligTC455_08709 | 35 | 0.72 | Mlig455_057110 | Neo: - Age: - |
PCDHA13 | 0.972 | - | - | - | - | 0.972 | - | Mlig455_057110 {REF} {Length: 4248} {Pfam: Cadherin domain [PF00028.19, score=213.8]; Cadherin-like [PF16184.7, score=23.5]} {Human: ENSG00000239389, PCDHA13, protocadherin alpha 13, [Score=221, Expect=6e-59]; ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=217, Expect=1e-56]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=216, Expect=1e-56]} {Mouse: ENSMUSG00000034755, Pcdh11x, protocadherin 11 X-linked, [Score=214, Expect=7e-56]; ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=204, Expect=3e-53]} {Dmel: FBgn0001075, ft, fat, [Score=152, Expect=1e-36]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=107, Expect=3e-23]} {Smed: dd_Smed_v6_13040_0_1, dd_Smed_v6_13040_0_1, [Score=301, Expect=6e-86]} {RNA1509_59255} {RNA1310_30001} {RNA815_31666} |
| 6. | MligTC455_45755 | 1686 | 35.12 | Mlig455_056541 | Neo: - Age: logFC(26M/2M)=0.434 |
0.972 | - | - | - | 0.972 | - | - | Mlig455_056541 {REF} {Length: 1559} {TRANSSPLICED} {Pfam: Xylose isomerase-like TIM barrel [PF01261.26, score=31.8]} {RNA1509_6228} {RNA1310_7664.2, RNA1509_6228} {RNA1509_6228, RNA815_8469} | |
| 7. | MligTC455_26456 | 246 | 5.12 | Mlig455_012235 | Neo: - Age: - |
PRKDC | 0.967 | - | - | - | 0.967 | - | - | Mlig455_012235 {REF} {Length: 2343} {Pfam: Phosphatidylinositol 3- and 4-kinase [PF00454.29, score=110.8]; FATC domain [PF02260.22, score=28.3]} {Human: ENSG00000253729, PRKDC, protein kinase, DNA-activated, catalytic subunit, [Score=189, Expect=2e-52]} {Mouse: ENSMUSG00000022672, Prkdc, protein kinase, DNA activated, catalytic polypeptide, [Score=190, Expect=3e-53]} {Dmel: FBgn0021796, Tor, Target of rapamycin, [Score=89.7, Expect=4e-19]} {Celegans: WBGene00002583, let-363, Target of rapamycin homolog, [Score=93.6, Expect=2e-20]} {Smed: dd_Smed_v6_8462_0_1, dd_Smed_v6_8462_0_1, [Score=143, Expect=1e-37]} {RNA1509_35967} {RNA1310_372} {RNA815_7114} |
| 8. | MligTC455_46632 | 211 | 4.39 | Mlig455_022724 | Neo: - Age: Down-Up-Down |
ANK1 | 0.965 | - | - | - | - | 0.965 | - | Mlig455_022724 {REF} {Length: 2051} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=69.3]; Ankyrin repeats (many copies) [PF13637.8, score=58.8]; Ankyrin repeats (many copies) [PF13857.8, score=58.6]; Ankyrin repeat [PF00023.32, score=47.5]; Ankyrin repeat [PF13606.8, score=42.9]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=57.4, Expect=4e-08]} {Mouse: ENSMUSG00000014498, Ankrd52, ankyrin repeat domain 52, [Score=52.8, Expect=7e-07]} {Smed: dd_Smed_v6_6201_0_2, dd_Smed_v6_6201_0_2, [Score=51.6, Expect=7e-07]} {RNA1509_25072} {RNA1310_21343.1} {RNA815_23927} |
| 9. | MligTC455_22347 | 140 | 2.91 | Mlig455_005470 | Neo: - Age: - |
0.961 | - | - | - | - | 0.961 | - | Mlig455_005470 {REF} {Length: 3771} {TRANSSPLICED} {RNA1509_35899} {RNA1310_20218} {RNA815_23054} | |
| 10. | MligTC455_40619 | 159 | 3.32 | Mlig455_016768 | Neo: - Age: Up-Up-Down |
KIF1A | 0.959 | - | - | - | - | 0.959 | - | Mlig455_016768 {REF} {Length: 6294} {Pfam: Kinesin protein 1B [PF12423.10, score=36.5]; FHA domain [PF00498.28, score=31.0]; Kinesin-associated [PF16183.7, score=19.9]} {Human: ENSG00000130294, KIF1A, kinesin family member 1A, [Score=87.4, Expect=4e-17]; ENSG00000054523, KIF1B, kinesin family member 1B, [Score=85.9, Expect=1e-16]} {Mouse: ENSMUSG00000087236, Kif28, kinesin family member 28, [Score=212, Expect=5e-58]} {Dmel: FBgn0267002, unc-104, uncoordinated-104, [Score=74.7, Expect=2e-13]} {Celegans: WBGene00002218, klp-6, Kinesin-like protein, [Score=236, Expect=6e-67]} {Smed: dd_Smed_v6_20223_0_1, dd_Smed_v6_20223_0_1, [Score=512, Expect=3e-172]} {RNA1509_18998} {RNA1310_3422, RNA1509_18998} {RNA1509_18998, RNA815_1532} |
| 11. | MligTC455_29629 | 6095 | 126.97 | Mlig455_012029, Mlig455_029148 | Neo: - Age: - |
AKAP1 | 0.958 | - | - | - | 0.958 | - | - | Mlig455_012029 {REF} {Length: 2838} {TRANSSPLICED} {Pfam: Tudor domain [PF00567.26, score=56.2]; KH domain [PF00013.31, score=39.9]} {Human: ENSG00000121057, AKAP1, A-kinase anchoring protein 1, [Score=142, Expect=1e-35]} {Mouse: ENSMUSG00000018428, Akap1, A kinase (PRKA) anchor protein 1, [Score=141, Expect=2e-35]} {Dmel: FBgn0263987, spoon, spoonbill, [Score=131, Expect=1e-32]} {Celegans: WBGene00016977, akap-1, KH domain-containing protein akap-1, [Score=149, Expect=2e-40]} {RNA1509_17637, RNA1509_22251, RNA1509_2444, RNA1509_34421, RNA1509_40179, RNA1509_45139, RNA1509_5875} {RNA1310_6452, RNA1509_17637, RNA1509_22251, RNA1509_2444, RNA1509_34421, RNA1509_40179, RNA1509_45139, RNA1509_5875} {RNA1509_17637, RNA1509_22251, RNA1509_2444, RNA1509_34421, RNA1509_40179, RNA1509_45139, RNA1509_5875, RNA815_1931.1} Mlig455_029148 {REF} {Length: 2757} {TRANSSPLICED} {Pfam: Tudor domain [PF00567.26, score=58.3]; KH domain [PF00013.31, score=29.9]} {Human: ENSG00000121057, AKAP1, A-kinase anchoring protein 1, [Score=131, Expect=2e-33]} {Mouse: ENSMUSG00000018428, Akap1, A kinase (PRKA) anchor protein 1, [Score=130, Expect=2e-33]} {Dmel: FBgn0263987, spoon, spoonbill, [Score=118, Expect=3e-29]} {Celegans: WBGene00016977, akap-1, KH domain-containing protein akap-1, [Score=137, Expect=4e-37]} {RNA1509_15420} {RNA1310_6452, RNA1509_15420} {RNA1509_15420, RNA815_1931.1} |
| 12. | MligTC455_14287 | 376 | 7.83 | Mlig455_016636 | Neo: Neoblast Age: Down-Up-Up Region-enriched R5: 1.218/0.02453 Regeneration-depleted R5: -2.846 |
NCL | 0.956 | - | - | - | - | 0.956 | - | Mlig455_016636 {REF} {Length: 3068} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=67.7]} {Human: ENSG00000115053, NCL, nucleolin, [Score=92.8, Expect=7e-19]} {Mouse: ENSMUSG00000022858, Tra2b, transformer 2 beta, [Score=48.5, Expect=6e-06]; ENSMUSG00000045193, Cirbp, cold inducible RNA binding protein, [Score=46.2, Expect=8e-06]} {Smed: dd_Smed_v6_11504_0_1, dd_Smed_v6_11504_0_1, [Score=106, Expect=2e-24]} {RNA1509_1178} {RNA1310_13731} {RNA815_4445} |
| 13. | MligTC455_15038 | 250 | 5.21 | Mlig455_063064 | Neo: Int S/G2/M Age: - |
0.956 | - | - | - | - | 0.956 | - | Mlig455_063064 {REF} {Length: 2533} {TRANSSPLICED} {tRNA: Undet(NNN),pseudo, score=20.4} {Pfam: Lysine methyltransferase [PF10294.11, score=66.3]} {Mouse: ENSMUSG00000090266, Mettl23, methyltransferase like 23, [RH, Score=51.6, Expect=7e-07]} {Dmel: FBgn0038396, CG5013, [Score=50.8, Expect=9e-07]} {Smed: dd_Smed_v6_7520_0_1, dd_Smed_v6_7520_0_1, [RH, Score=67.8, Expect=8e-13]} {RNA1509_53043} {RNA1310_32954} {RNA815_28785} | |
| 14. | MligTC455_51870 | 192 | 4 | Mlig455_004925 | Neo: - Age: logFC(26M/2M)=-0.367 |
ZFYVE9 | 0.955 | - | - | - | - | 0.955 | - | Mlig455_004925 {REF} {Length: 2113} {Pfam: Domain of unknown function (DUF3480) [PF11979.10, score=83.2]; Atrophin-1 family [PF03154.17, score=16.9]} {Human: ENSG00000157077, ZFYVE9, zinc finger FYVE-type containing 9, [Score=129, Expect=1e-30]} {Mouse: ENSMUSG00000034557, Zfyve9, zinc finger, FYVE domain containing 9, [Score=130, Expect=1e-31]} {Dmel: FBgn0026369, Sara, Smad anchor for receptor activation, [Score=115, Expect=1e-26]} {Smed: dd_Smed_v6_8098_0_1, dd_Smed_v6_8098_0_1, [Score=88.2, Expect=4e-18]} {RNA1509_31204} {RNA1310_16232} {RNA815_22696} |
| 15. | MligTC455_32598 | 616 | 12.83 | Mlig455_005315 | Neo: - Age: logFC(26M/2M)=0.585 |
MAN2B1 | 0.954 | - | - | - | - | 0.954 | - | Mlig455_005315 {REF} {Length: 5133} {Pfam: Glycosyl hydrolases family 38 C-terminal domain [PF07748.15, score=94.0]; Glycosyl hydrolases family 38 C-terminal beta sandwich domain [PF17677.3, score=25.7]} {Human: ENSG00000104774, MAN2B1, mannosidase alpha class 2B member 1, [Score=284, Expect=2e-84]} {Mouse: ENSMUSG00000005142, Man2b1, mannosidase 2, alpha B1, [Score=268, Expect=7e-79]} {Dmel: FBgn0027611, LManII, Lysosomal alpha-mannosidase II, [Score=262, Expect=1e-76]} {Celegans: WBGene00018877, aman-1, Alpha-mannosidase, [Score=164, Expect=4e-43]} {Smed: dd_Smed_v6_1942_0_1, dd_Smed_v6_1942_0_1, [Score=248, Expect=3e-72]} {RNA1509_3414} {RNA1310_2591.1} {RNA815_805.1} |
| 16. | MligTC455_44606 | 95 | 1.97 | Mlig455_031339 | Neo: - Age: - |
CHRNA9 | 0.953 | - | - | - | - | 0.953 | - | Mlig455_031339 {REF} {Length: 3943} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=143.9]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=114.8]} {Human: ENSG00000174343, CHRNA9, cholinergic receptor nicotinic alpha 9 subunit, [Score=213, Expect=9e-62]} {Mouse: ENSMUSG00000029205, Chrna9, cholinergic receptor, nicotinic, alpha polypeptide 9, [Score=209, Expect=1e-60]} {Dmel: FBgn0266347, nAChRalpha4, nicotinic Acetylcholine Receptor alpha4, [Score=196, Expect=1e-55]} {Celegans: WBGene00000050, acr-11, AcetylCholine Receptor, [Score=189, Expect=2e-53]} {Smed: dd_Smed_v6_10322_0_1, dd_Smed_v6_10322_0_1, [RH, Score=446, Expect=4e-151]} {RNA1509_46245, RNA1509_58340} {RNA1310_16441, RNA1509_58340} {RNA1509_58340, RNA815_17572} |
Berezikov Lab - 2020-2021 © ERIBA