M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_41819

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_41819 4493 93.61 Mlig455_019994

Neo: -

Age: -

 NDUFA10 Mlig455_019994 {REF} {Length: 2118} {Pfam: Deoxynucleoside kinase [PF01712.21, score=81.5]} {Human: ENSG00000281434, NDUFA10, NADH:ubiquinone oxidoreductase subunit A10, [RH, Score=95.5, Expect=4e-21]; ENSG00000130414, NDUFA10, NADH:ubiquinone oxidoreductase subunit A10, [RH, Score=95.5, Expect=4e-21]} {Mouse: ENSMUSG00000026260, Ndufa10, NADH:ubiquinone oxidoreductase subunit A10, [RH, Score=89.0, Expect=4e-19]} {Dmel: FBgn0019957, ND-42, NADH dehydrogenase (ubiquinone) 42 kDa subunit, [RH, Score=120, Expect=4e-30]} {Celegans: WBGene00019401, nuo-4, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial, [RH, Score=104, Expect=2e-24]} {Smed: dd_Smed_v6_5279_0_1, dd_Smed_v6_5279_0_1, [RH, Score=175, Expect=2e-50]} {RNA1509_1325} {RNA1310_14617} {RNA815_5337}

Cumulative graph for MligTC455_41819

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.073 6.691 0.05740 0.55343
RegionR2 -0.143 6.691 0.58839 0.94259
RegionR3 0.196 6.691 0.36505 0.89945
RegionR4 0.959 6.691 0.00016 0.00237
RegionR5 0.294 6.691 0.15111 0.40506
RegionR6 0.172 6.691 0.43348 0.99563
RegionR7 -0.087 6.691 0.74129 1.00000
RegionR8 -0.317 6.691 0.34368 0.97681

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.136 6.691 0.85790 1.00000
RegenerationR2 0.271 6.691 0.25694 0.70347
RegenerationR3 0.205 6.691 0.41579 0.81255
RegenerationR4 -0.212 6.691 0.42156 0.82617
RegenerationR5 0.169 6.691 0.48631 0.85036
RegenerationR6 0.141 6.691 0.58006 0.85775
RegenerationBL 0.573 6.691 0.02221 0.16270
RegenerationTP 0.215 6.691 0.46309 0.87629


Genes with expression patterns similar to MligTC455_41819

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_41819 4493 93.61 Mlig455_019994

Neo: -

Age: -

 NDUFA10 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_019994 {REF} {Length: 2118} {Pfam: Deoxynucleoside kinase [PF01712.21, score=81.5]} {Human: ENSG00000281434, NDUFA10, NADH:ubiquinone oxidoreductase subunit A10, [RH, Score=95.5, Expect=4e-21]; ENSG00000130414, NDUFA10, NADH:ubiquinone oxidoreductase subunit A10, [RH, Score=95.5, Expect=4e-21]} {Mouse: ENSMUSG00000026260, Ndufa10, NADH:ubiquinone oxidoreductase subunit A10, [RH, Score=89.0, Expect=4e-19]} {Dmel: FBgn0019957, ND-42, NADH dehydrogenase (ubiquinone) 42 kDa subunit, [RH, Score=120, Expect=4e-30]} {Celegans: WBGene00019401, nuo-4, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial, [RH, Score=104, Expect=2e-24]} {Smed: dd_Smed_v6_5279_0_1, dd_Smed_v6_5279_0_1, [RH, Score=175, Expect=2e-50]} {RNA1509_1325} {RNA1310_14617} {RNA815_5337}
2. MligTC455_47578 1101 22.94 Mlig455_032916

Neo: -

Age: Down-Down-Up

 1.731 - - - - 0.966 0.765 Mlig455_032916 {REF} {Length: 2168} {TRANSSPLICED} {RNA1509_36784, RNA1509_43500, RNA1509_56493} {RNA1310_37626, RNA1509_36784, RNA1509_43500, RNA1509_56493} {RNA1509_36784, RNA1509_43500, RNA1509_56493, RNA815_15592}
3. MligTC455_51216 5475 114.05 Mlig455_047550, Mlig455_069680

Neo: -

Age: Down-Down-Up

 LSAMP 1.694 - - - - 0.955 0.739

Mlig455_047550 {REF} {Length: 2394} {Pfam: Immunoglobulin domain [PF13927.8, score=113.9]; Immunoglobulin domain [PF00047.27, score=86.0]; Immunoglobulin I-set domain [PF07679.18, score=78.9]; Immunoglobulin domain [PF13895.8, score=72.5]; Immunoglobulin V-set domain [PF07686.19, score=59.0]; CD80-like C2-set immunoglobulin domain [PF08205.14, score=38.6]} {Human: ENSG00000185565, LSAMP, limbic system associated membrane protein, [Score=83.6, Expect=2e-17]; ENSG00000172260, NEGR1, neuronal growth regulator 1, [Score=82.4, Expect=9e-17]} {Mouse: ENSMUSG00000061080, Lsamp, limbic system-associated membrane protein, [Score=84.0, Expect=2e-17]; ENSMUSG00000040037, Negr1, neuronal growth regulator 1, [Score=83.2, Expect=3e-17]} {Dmel: FBgn0085382, CG34353, [Score=90.1, Expect=3e-19]} {Celegans: WBGene00006820, unc-89, Muscle M-line assembly protein unc-89, [Score=60.5, Expect=1e-09]} {Smed: dd_Smed_v6_2826_0_1, dd_Smed_v6_2826_0_1, [RH, Score=225, Expect=1e-69]} {RNA1509_3076} {RNA1310_10384.1, RNA1509_3076} {RNA1509_3076, RNA815_3524.1}

Mlig455_069680 {REF} {Length: 2760} {Pfam: Immunoglobulin domain [PF13927.8, score=113.9]; Immunoglobulin domain [PF00047.27, score=86.0]; Immunoglobulin I-set domain [PF07679.18, score=78.9]; Immunoglobulin domain [PF13895.8, score=72.5]; Immunoglobulin V-set domain [PF07686.19, score=59.0]; CD80-like C2-set immunoglobulin domain [PF08205.14, score=38.6]} {Human: ENSG00000185565, LSAMP, limbic system associated membrane protein, [Score=83.6, Expect=2e-17]; ENSG00000172260, NEGR1, neuronal growth regulator 1, [Score=82.4, Expect=9e-17]} {Mouse: ENSMUSG00000061080, Lsamp, limbic system-associated membrane protein, [Score=84.0, Expect=2e-17]; ENSMUSG00000040037, Negr1, neuronal growth regulator 1, [Score=83.2, Expect=3e-17]} {Dmel: FBgn0085382, CG34353, [Score=90.1, Expect=3e-19]} {Celegans: WBGene00006820, unc-89, Muscle M-line assembly protein unc-89, [Score=60.5, Expect=1e-09]} {Smed: dd_Smed_v6_2826_0_1, dd_Smed_v6_2826_0_1, [RH, Score=225, Expect=1e-69]} {RNA1509_3076, RNA1509_56669} {RNA1310_10384.2, RNA1509_56669} {RNA1509_56669, RNA815_3524.1}
4. MligTC455_31751 390 8.12 Mlig455_020399

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.428

 PCCA 0.958 - - - - 0.958 - Mlig455_020399 {REF} {Length: 4079} {TRANSSPLICED} {Pfam: Carbamoyl-phosphate synthase L chain, ATP binding domain [PF02786.19, score=273.4]; Biotin carboxylase, N-terminal domain [PF00289.24, score=146.4]; Biotin carboxylase C-terminal domain [PF02785.21, score=118.5]; Propionyl-coenzyme A carboxylase BT domain [PF18140.3, score=67.3]; Biotin-requiring enzyme [PF00364.24, score=57.8]; Biotin-lipoyl like [PF13533.8, score=37.5]; D-ala D-ala ligase C-terminus [PF07478.15, score=33.8]; ATP-grasp domain [PF02222.24, score=30.0]; RimK-like ATP-grasp domain [PF08443.13, score=23.8]; ATP-grasp domain [PF02655.16, score=21.2]} {Human: ENSG00000175198, PCCA, propionyl-CoA carboxylase subunit alpha, [RH, Score=848, Expect=0.0]} {Mouse: ENSMUSG00000041650, Pcca, propionyl-Coenzyme A carboxylase, alpha polypeptide, [RH, Score=864, Expect=0.0]} {Dmel: FBgn0039877, CG2118, [Score=454, Expect=2e-150]} {Celegans: WBGene00017864, pcca-1, Propionyl-CoA carboxylase alpha chain, mitochondrial, [RH, Score=826, Expect=0.0]} {Smed: dd_Smed_v6_1247_0_1, dd_Smed_v6_1247_0_1, [RH, Score=1031, Expect=0.0]} {RNA1509_275} {RNA1310_9293.1} {RNA815_1830.1}
5. MligTC455_15829 660 13.76 Mlig455_002880

Neo: -

Age: -

 KY 0.953 - - - - 0.953 - Mlig455_002880 {REF} {Length: 6997} {TRANSSPLICED} {Human: ENSG00000174611, KY, kyphoscoliosis peptidase, [Score=105, Expect=4e-22]} {Mouse: ENSMUSG00000035606, Ky, kyphoscoliosis peptidase, [Score=106, Expect=1e-22]} {Dmel: FBgn0050147, Hil, Hillarin, [Score=209, Expect=3e-55]} {Celegans: WBGene00003089, ltd-1, Lim and Transglutaminase Domain; Lim and transglutaminase domain protein, [Score=173, Expect=1e-45]} {Smed: dd_Smed_v6_5330_0_1, dd_Smed_v6_5330_0_1, [RH, Score=561, Expect=3e-170]} {RNA1509_40353, RNA1509_43981, RNA1509_6471} {RNA1310_662.1, RNA1509_40353, RNA1509_43981} {RNA1509_40353, RNA1509_43981, RNA815_228}
6. MligTC455_27425 187 3.89 Mlig455_047152

Neo: -

Age: logFC(26M/2M)=0.348

Region-enriched R5: 2.140/0.00643

 CTDSP1 0.951 - - - - 0.951 - Mlig455_047152 {REF} {Length: 5508} {Pfam: NLI interacting factor-like phosphatase [PF03031.20, score=152.4]} {Human: ENSG00000144579, CTDSP1, CTD small phosphatase 1, [RH, Score=232, Expect=1e-73]; ENSG00000144677, CTDSPL, CTD small phosphatase like, [RH, Score=228, Expect=1e-71]; ENSG00000175215, CTDSP2, CTD small phosphatase 2, [RH, Score=222, Expect=1e-69]} {Mouse: ENSMUSG00000026176, Ctdsp1, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1, [RH, Score=232, Expect=1e-73]; ENSMUSG00000047409, Ctdspl, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like, [RH, Score=229, Expect=3e-72]; ENSMUSG00000078429, Ctdsp2, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2, [RH, Score=224, Expect=1e-70]} {Dmel: FBgn0036556, CG5830, [RH, Score=221, Expect=8e-69]} {Celegans: WBGene00007054, scpl-1, CTD small phosphatase-like protein 1, [RH, Score=223, Expect=2e-67]} {Smed: dd_Smed_v6_8196_0_1, dd_Smed_v6_8196_0_1, [RH, Score=245, Expect=4e-74]} {RNA1509_41690} {RNA1310_6011.1} {RNA815_20170.1}
7. MligTC455_54323 5959 124.14 Mlig455_051144, Mlig455_062999, Mlig455_069714

Neo: -

Age: logFC(26M/2M)=0.356

 COPG2 0.951 - - - - - 0.951

Mlig455_051144 {REF} {Length: 3093} {Pfam: Adaptin N terminal region [PF01602.22, score=408.8]; Coatomer gamma subunit appendage platform subdomain [PF08752.12, score=174.6]; Coatomer subunit gamma-1 C-terminal appendage platform [PF16381.7, score=121.3]; HEAT repeats [PF13646.8, score=59.1]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=26.5]} {Human: ENSG00000158623, COPG2, coatomer protein complex subunit gamma 2, [RH, Score=1065, Expect=0.0]; ENSG00000181789, COPG1, coatomer protein complex subunit gamma 1, [RH, Score=1039, Expect=0.0]} {Mouse: ENSMUSG00000025607, Copg2, coatomer protein complex, subunit gamma 2, [RH, Score=1059, Expect=0.0]; ENSMUSG00000030058, Copg1, coatomer protein complex, subunit gamma 1, [RH, Score=1048, Expect=0.0]} {Dmel: FBgn0028968, gammaCOP, Coat Protein (coatomer) gamma, [RH, Score=971, Expect=0.0]} {Celegans: WBGene00011775, T14G10.5, Probable coatomer subunit gamma, [RH, Score=964, Expect=0.0]} {Smed: dd_Smed_v6_2214_0_1, dd_Smed_v6_2214_0_1, [RH, Score=827, Expect=0.0]} {RNA1509_29983, RNA1509_44274, RNA1509_51211} {RNA1310_2644.1, RNA1509_29983, RNA1509_44274} {RNA1509_29983, RNA1509_44274, RNA815_462.1}

Mlig455_062999 {REF} {Length: 3029} {TRANSSPLICED} {Pfam: Adaptin N terminal region [PF01602.22, score=408.8]; Coatomer gamma subunit appendage platform subdomain [PF08752.12, score=174.1]; Coatomer subunit gamma-1 C-terminal appendage platform [PF16381.7, score=121.3]; HEAT repeats [PF13646.8, score=59.0]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=26.5]} {Human: ENSG00000158623, COPG2, coatomer protein complex subunit gamma 2, [RH, Score=1063, Expect=0.0]; ENSG00000181789, COPG1, coatomer protein complex subunit gamma 1, [RH, Score=1038, Expect=0.0]} {Mouse: ENSMUSG00000025607, Copg2, coatomer protein complex, subunit gamma 2, [RH, Score=1056, Expect=0.0]; ENSMUSG00000030058, Copg1, coatomer protein complex, subunit gamma 1, [RH, Score=1048, Expect=0.0]} {Dmel: FBgn0028968, gammaCOP, Coat Protein (coatomer) gamma, [RH, Score=974, Expect=0.0]} {Celegans: WBGene00011775, T14G10.5, Probable coatomer subunit gamma, [RH, Score=962, Expect=0.0]} {Smed: dd_Smed_v6_2214_0_1, dd_Smed_v6_2214_0_1, [RH, Score=829, Expect=0.0]} {RNA1509_1160, RNA1509_25179, RNA1509_51211} {RNA1310_2644.1, RNA1509_1160, RNA1509_25179, RNA1509_51211} {RNA1509_1160, RNA1509_25179, RNA1509_51211, RNA815_462.1}

Mlig455_069714 {REF} {Length: 3094} {Pfam: Adaptin N terminal region [PF01602.22, score=408.8]; Coatomer gamma subunit appendage platform subdomain [PF08752.12, score=174.1]; Coatomer subunit gamma-1 C-terminal appendage platform [PF16381.7, score=121.3]; HEAT repeats [PF13646.8, score=59.0]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=26.5]} {Human: ENSG00000158623, COPG2, coatomer protein complex subunit gamma 2, [RH, Score=1063, Expect=0.0]; ENSG00000181789, COPG1, coatomer protein complex subunit gamma 1, [RH, Score=1038, Expect=0.0]} {Mouse: ENSMUSG00000025607, Copg2, coatomer protein complex, subunit gamma 2, [RH, Score=1056, Expect=0.0]; ENSMUSG00000030058, Copg1, coatomer protein complex, subunit gamma 1, [RH, Score=1048, Expect=0.0]} {Dmel: FBgn0028968, gammaCOP, Coat Protein (coatomer) gamma, [RH, Score=974, Expect=0.0]} {Celegans: WBGene00011775, T14G10.5, Probable coatomer subunit gamma, [RH, Score=962, Expect=0.0]} {Smed: dd_Smed_v6_2214_0_1, dd_Smed_v6_2214_0_1, [RH, Score=829, Expect=0.0]} {RNA1509_3930, RNA1509_51211} {RNA1310_2644.1, RNA1509_3930} {RNA1509_3930, RNA815_462.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA