Data search
Results for MligTC455_42144
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_42144 | 377 | 7.86 | Mlig455_022869 | Neo: Irradiation Age: - Region-enriched R5: 1.739/0.04174 |
BRIP1 | Mlig455_022869 {REF} {Length: 3883} {TRANSSPLICED} {Pfam: Helicase C-terminal domain [PF13307.8, score=179.3]; DEAD_2 [PF06733.17, score=167.3]; DEAD/DEAH box helicase [PF00270.31, score=18.7]} {Human: ENSG00000136492, BRIP1, BRCA1 interacting protein C-terminal helicase 1, [RH, Score=608, Expect=0.0]} {Mouse: ENSMUSG00000034329, Brip1, BRCA1 interacting protein C-terminal helicase 1, [RH, Score=656, Expect=0.0]} {Dmel: FBgn0029798, CG4078, [Score=217, Expect=9e-58]} {Celegans: WBGene00009124, rtel-1, Regulator of telomere elongation helicase 1 homolog, [RH, Score=267, Expect=2e-74]} {Smed: dd_Smed_v6_16638_0_2, dd_Smed_v6_16638_0_2, [RH, Score=435, Expect=2e-138]} {RNA1509_12020} {RNA1310_2305.2, RNA1509_12020} {RNA1509_12020, RNA815_995} |
Cumulative graph for MligTC455_42144
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -6.494 | 3.484 | 0.08920 | 0.64299 | |
| RegionR2 | 0.827 | 3.484 | 0.41239 | 0.80570 | |
| RegionR3 | 0.632 | 3.484 | 0.49694 | 0.99316 | |
| RegionR4 | 1.059 | 3.484 | 0.21850 | 0.50659 | |
| RegionR5 | 1.739 | 3.484 | 0.00640 | 0.04174 | |
| RegionR6 | 1.162 | 3.484 | 0.16439 | 0.71885 | |
| RegionR7 | 0.597 | 3.484 | 0.58573 | 1.00000 | |
| RegionR8 | 0.479 | 3.484 | 0.68674 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 0.192 | 3.484 | 0.99998 | 1.00000 | |
| RegenerationR2 | 0.846 | 3.484 | 0.09579 | 0.49123 | |
| RegenerationR3 | 1.332 | 3.484 | 0.01907 | 0.25290 | |
| RegenerationR4 | 0.417 | 3.484 | 0.44287 | 0.83843 | |
| RegenerationR5 | 0.798 | 3.484 | 0.08539 | 0.45050 | |
| RegenerationR6 | 1.379 | 3.484 | 0.00999 | 0.12324 | |
| RegenerationBL | 1.323 | 3.484 | 0.04274 | 0.23569 | |
| RegenerationTP | 1.245 | 3.484 | 0.11113 | 0.51268 |
Genes with expression patterns similar to MligTC455_42144
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_42144 | 377 | 7.86 | Mlig455_022869 | Neo: Irradiation Age: - Region-enriched R5: 1.739/0.04174 |
BRIP1 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_022869 {REF} {Length: 3883} {TRANSSPLICED} {Pfam: Helicase C-terminal domain [PF13307.8, score=179.3]; DEAD_2 [PF06733.17, score=167.3]; DEAD/DEAH box helicase [PF00270.31, score=18.7]} {Human: ENSG00000136492, BRIP1, BRCA1 interacting protein C-terminal helicase 1, [RH, Score=608, Expect=0.0]} {Mouse: ENSMUSG00000034329, Brip1, BRCA1 interacting protein C-terminal helicase 1, [RH, Score=656, Expect=0.0]} {Dmel: FBgn0029798, CG4078, [Score=217, Expect=9e-58]} {Celegans: WBGene00009124, rtel-1, Regulator of telomere elongation helicase 1 homolog, [RH, Score=267, Expect=2e-74]} {Smed: dd_Smed_v6_16638_0_2, dd_Smed_v6_16638_0_2, [RH, Score=435, Expect=2e-138]} {RNA1509_12020} {RNA1310_2305.2, RNA1509_12020} {RNA1509_12020, RNA815_995} |
| 2. | MligTC455_31445 | 1205 | 25.1 | Mlig455_063665 | Neo: Int S/G2/M Age: - Region-enriched R5: 1.051/0.00174 |
AHCYL2 | 2.586 | - | - | - | 0.875 | 0.958 | 0.753 | Mlig455_063665 {REF} {Length: 2796} {Pfam: S-adenosyl-L-homocysteine hydrolase [PF05221.19, score=234.2]; S-adenosyl-L-homocysteine hydrolase, NAD binding domain [PF00670.23, score=225.0]; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [PF02826.21, score=38.9]; Acetohydroxy acid isomeroreductase, NADPH-binding domain [PF07991.14, score=23.5]; Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain [PF02882.21, score=19.6]} {Human: ENSG00000158467, AHCYL2, adenosylhomocysteinase like 2, [Score=483, Expect=1e-164]} {Mouse: ENSMUSG00000029772, Ahcyl2, S-adenosylhomocysteine hydrolase-like 2, [Score=483, Expect=4e-166]} {Dmel: FBgn0035371, AhcyL1, Adenosylhomocysteinase like 1, [Score=493, Expect=3e-170]} {Celegans: WBGene00019322, ahcy-1, Adenosylhomocysteinase, [Score=330, Expect=5e-108]} {Smed: dd_Smed_v6_5492_0_1, dd_Smed_v6_5492_0_1, [Score=475, Expect=3e-163]} {RNA1509_7070} {RNA1310_5412} {RNA815_4105} |
| 3. | MligTC455_47692 | 358 | 7.46 | Mlig455_004798 | Neo: - Age: Up-Down-Down Region-enriched R5: 1.250/0.00667 |
2.527 | - | - | 0.792 | 0.962 | 0.773 | - | Mlig455_004798 {REF} {Length: 1270} {NoTransDecoderORF} {RNA1509_31836} {RNA1310_47389, RNA1509_31836} {RNA1509_31836, RNA815_23742} | |
| 4. | MligTC455_47993 | 701 | 14.6 | Mlig455_041093 | Neo: - Age: - |
LSM1 | 1.713 | - | - | 0.747 | 0.966 | - | - | Mlig455_041093 {REF} {Length: 1552} {TRANSSPLICED} {Pfam: LSM domain [PF01423.24, score=48.3]} {Human: ENSG00000175324, LSM1, LSM1 homolog, mRNA degradation associated, [RH, Score=123, Expect=5e-36]} {Mouse: ENSMUSG00000037296, Lsm1, LSM1 homolog, mRNA degradation associated, [RH, Score=120, Expect=8e-35]} {Dmel: FBgn0261067, LSm1, Like Sm 1, [RH, Score=103, Expect=2e-28]} {Celegans: WBGene00003076, lsm-1, LSM Sm-like protein, [RH, Score=92.4, Expect=2e-24]} {Smed: dd_Smed_v6_6794_0_2, dd_Smed_v6_6794_0_2, [RH, Score=95.9, Expect=1e-25]} {RNA1509_23538} {RNA1310_19832.1} {RNA815_18339} |
| 5. | MligTC455_48487 | 433 | 9.02 | Mlig455_019752 | Neo: - Age: - Region-enriched R7: 2.416/0.04729 |
TBC1D12 | 1.653 | - | - | - | 0.703 | - | 0.950 | Mlig455_019752 {REF} {Length: 3840} {TRANSSPLICED} {Pfam: Rab-GTPase-TBC domain [PF00566.20, score=150.6]} {Human: ENSG00000108239, TBC1D12, TBC1 domain family member 12, [RH, Score=311, Expect=9e-96]; ENSG00000132405, TBC1D14, TBC1 domain family member 14, [RH, Score=310, Expect=4e-96]} {Mouse: ENSMUSG00000048720, Tbc1d12, TBC1D12: TBC1 domain family, member 12, [RH, Score=309, Expect=6e-96]; ENSMUSG00000029192, Tbc1d14, TBC1 domain family, member 14, [RH, Score=306, Expect=1e-94]} {Dmel: FBgn0035879, GAPcenA, GTPase activating protein and centrosome-associated, [Score=99.0, Expect=4e-21]} {Celegans: WBGene00044061, tbc-12, TBC (Tre-2/Bub2/Cdc16) domain family, [RH, Score=267, Expect=6e-81]} {Smed: dd_Smed_v6_7827_0_1, dd_Smed_v6_7827_0_1, [RH, Score=261, Expect=1e-78]} {RNA1509_49497} {RNA1310_16549} {RNA815_3936.1} |
| 6. | MligTC455_40188 | 272 | 5.67 | Mlig455_062295 | Neo: Irradiation Age: - Region-enriched R5: 1.002/0.04846 |
0.963 | - | - | - | - | - | 0.963 | Mlig455_062295 {REF} {Length: 5152} {TRANSSPLICED} {RNA1509_31164, RNA1509_6022} {RNA1310_1836, RNA1509_31164, RNA1509_6022} {RNA1509_31164, RNA1509_6022, RNA815_1211} | |
| 7. | MligTC455_23792 | 179 | 3.73 | Mlig455_033630 | Neo: - Age: - |
CDK6 | 0.961 | - | - | - | - | - | 0.961 | Mlig455_033630 {REF} {Length: 2758} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=158.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=91.9]} {Human: ENSG00000105810, CDK6, cyclin dependent kinase 6, [Score=140, Expect=3e-37]; ENSG00000135446, CDK4, cyclin dependent kinase 4, [Score=138, Expect=9e-37]} {Mouse: ENSMUSG00000006728, Cdk4, cyclin-dependent kinase 4, [Score=149, Expect=1e-41]} {Dmel: FBgn0016131, Cdk4, Cyclin-dependent kinase 4, [Score=137, Expect=7e-37]} {Celegans: WBGene00000405, cdk-1, Cyclin-dependent kinase 1, [Score=120, Expect=1e-30]} {Smed: dd_Smed_v6_6179_0_5, dd_Smed_v6_6179_0_5, [Score=135, Expect=2e-36]} {RNA1509_24860, RNA1509_58426} {RNA1310_17562, RNA1509_24860, RNA1509_58426} {RNA1509_24860, RNA1509_58426, RNA815_8098} |
| 8. | MligTC455_25223 | 281 | 5.85 | Mlig455_053623 | Neo: - Age: - |
ESF1 | 0.961 | - | - | - | - | - | 0.961 | Mlig455_053623 {REF} {Length: 2309} {TRANSSPLICED} {Pfam: NUC153 domain [PF08159.14, score=41.6]; CDC45-like protein [PF02724.16, score=22.8]; Nop14-like family [PF04147.14, score=20.9]; SDA1 [PF05285.14, score=20.3]} {Human: ENSG00000089048, ESF1, ESF1 nucleolar pre-rRNA processing protein homolog, [RH, Score=142, Expect=9e-35]} {Mouse: ENSMUSG00000045624, Esf1, ESF1 nucleolar pre-rRNA processing protein homolog, [RH, Score=144, Expect=1e-35]} {Dmel: FBgn0024364, CG11417, [Score=184, Expect=2e-49]} {Smed: dd_Smed_v6_12089_0_1, dd_Smed_v6_12089_0_1, [Score=75.1, Expect=3e-14]} {RNA1509_37466, RNA1509_48220, RNA1509_54928} {RNA1310_10403, RNA1509_37466, RNA1509_48220, RNA1509_54928} {RNA1509_37466, RNA1509_48220, RNA1509_54928, RNA815_3468} |
| 9. | MligTC455_16590 | 909 | 18.95 | Mlig455_051504, Mlig455_051541 | Neo: - Age: - |
ONECUT1 | 0.959 | - | - | - | - | - | 0.959 | Mlig455_051504 {REF} {Length: 4615} {Pfam: Homeodomain [PF00046.31, score=42.5]; Homeobox KN domain [PF05920.13, score=20.3]} {Human: ENSG00000169856, ONECUT1, one cut homeobox 1, [Score=144, Expect=2e-39]} {Mouse: ENSMUSG00000043013, Onecut1, one cut domain, family member 1, [Score=144, Expect=7e-40]} {Dmel: FBgn0028996, onecut, [Score=140, Expect=2e-37]} {Celegans: WBGene00015934, ceh-48, One cut domain family member, [Score=114, Expect=4e-29]} {Smed: dd_Smed_v6_16472_0_1, dd_Smed_v6_16472_0_1, [Score=140, Expect=1e-37]} {RNA1509_10654} {RNA1310_2337.1, RNA1509_10654} {RNA1509_10654, RNA815_7905} Mlig455_051541 {REF} {Length: 3687} {Pfam: CUT domain [PF02376.17, score=114.0]; Homeodomain [PF00046.31, score=40.3]; Homeobox KN domain [PF05920.13, score=19.5]} {Human: ENSG00000169856, ONECUT1, one cut homeobox 1, [RH, Score=262, Expect=1e-81]; ENSG00000119547, ONECUT2, one cut homeobox 2, [RH, Score=253, Expect=1e-77]} {Mouse: ENSMUSG00000043013, Onecut1, one cut domain, family member 1, [RH, Score=263, Expect=4e-82]; ENSMUSG00000045991, Onecut2, one cut domain, family member 2, [RH, Score=253, Expect=5e-78]} {Dmel: FBgn0028996, onecut, [RH, Score=265, Expect=4e-78]} {Celegans: WBGene00015934, ceh-48, One cut domain family member, [RH, Score=232, Expect=1e-70]} {Smed: dd_Smed_v6_16472_0_1, dd_Smed_v6_16472_0_1, [RH, Score=275, Expect=1e-83]} {RNA1509_10654} {RNA1310_2337.1} {RNA815_21352} |
| 10. | MligTC455_21288 | 421 | 8.76 | Mlig455_054900 | Neo: - Age: - |
CCNY | 0.958 | - | - | - | - | - | 0.958 | Mlig455_054900 {REF} {Length: 3728} {TRANSSPLICED} {Pfam: Cyclin, N-terminal domain [PF00134.25, score=37.2]; Cyclin [PF08613.13, score=29.5]} {Human: ENSG00000108100, CCNY, cyclin Y, [RH, Score=268, Expect=2e-86]; ENSG00000163249, CCNYL1, cyclin Y like 1, [RH, Score=260, Expect=7e-83]} {Mouse: ENSMUSG00000024286, Ccny, cyclin Y, [RH, Score=271, Expect=1e-87]; ENSMUSG00000070871, Ccnyl1, cyclin Y-like 1, [RH, Score=261, Expect=2e-83]} {Dmel: FBgn0032378, CycY, Cyclin Y, [RH, Score=261, Expect=4e-83]} {Celegans: WBGene00022697, cyy-1, Cyclin-Y, [RH, Score=275, Expect=3e-89]} {Smed: dd_Smed_v6_8226_0_1, dd_Smed_v6_8226_0_1, [Score=245, Expect=6e-77]} {RNA1509_8018} {RNA1310_8716, RNA1509_8018} {RNA1509_8018, RNA815_15699} |
| 11. | MligTC455_40187 | 270 | 5.62 | Mlig455_049370 | Neo: Irradiation |
0.957 | - | - | - | - | - | 0.957 | Mlig455_049370 {REF} {Length: 5146} {TRANSSPLICED} {RNA1509_31164, RNA1509_58180} {RNA1310_1836, RNA1509_58180} {RNA1509_58180, RNA815_1211} | |
| 12. | MligTC455_19316 | 221 | 4.6 | Mlig455_050415 | Neo: Irradiation Age: - |
ZNF626 | 0.954 | - | - | - | - | - | 0.954 | Mlig455_050415 {REF} {Length: 3403} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=68.5]; Zinc-finger double domain [PF13465.8, score=68.0]; C2H2-type zinc finger [PF13894.8, score=56.1]; C2H2-type zinc finger [PF13912.8, score=36.3]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=26.1]; Zinc ribbon domain [PF09723.12, score=25.6]; Transposase zinc-ribbon domain [PF12760.9, score=22.3]; Zic proteins zinc finger domain [PF18366.3, score=19.2]} {Human: ENSG00000188171, ZNF626, zinc finger protein 626, [Score=122, Expect=9e-30]} {Mouse: ENSMUSG00000092416, Zfp141, zinc finger protein 141, [Score=112, Expect=4e-26]; ENSMUSG00000074863, Platr25, pluripotency associated transcript 25, [Score=110, Expect=8e-26]; ENSMUSG00000054715, Zscan22, zinc finger and SCAN domain containing 22, [Score=110, Expect=9e-26]; ENSMUSG00000091183, Gm5141, predicted gene 5141, [Score=108, Expect=5e-25]; ENSMUSG00000069476, Zfp616, zinc finger protein 616, [Score=108, Expect=1e-24]; ENSMUSG00000047603, Zfp235, zinc finger protein 235, [Score=107, Expect=1e-24]; ENSMUSG00000030757, Zkscan2, zinc finger with KRAB and SCAN domains 2, [Score=107, Expect=3e-24]; ENSMUSG00000045639, Zfp629, zinc finger protein 629, [Score=107, Expect=3e-24]} {Dmel: FBgn0004618, gl, glass, [Score=112, Expect=2e-26]} {Celegans: WBGene00000483, che-1, Transcription factor che-1, [Score=97.8, Expect=2e-23]} {Smed: dd_Smed_v6_14824_0_1, dd_Smed_v6_14824_0_1, [Score=99.4, Expect=5e-23]} {RNA1509_16295, RNA1509_53463} {RNA1310_10064, RNA1509_16295, RNA1509_53463} {RNA1509_16295, RNA1509_53463, RNA815_10615} |
| 13. | MligTC455_41991 | 456 | 9.5 | Mlig455_062277 | Neo: - Age: - |
NDST3 | 0.952 | - | - | - | - | - | 0.952 | Mlig455_062277 {REF} {Length: 5128} {Pfam: heparan sulfate-N-deacetylase [PF12062.10, score=456.8]; Sulfotransferase domain [PF00685.29, score=92.8]; Sulfotransferase family [PF13469.8, score=43.9]} {Human: ENSG00000164100, NDST3, N-deacetylase and N-sulfotransferase 3, [RH, Score=682, Expect=0.0]; ENSG00000166507, NDST2, N-deacetylase and N-sulfotransferase 2, [RH, Score=679, Expect=0.0]; ENSG00000070614, NDST1, N-deacetylase and N-sulfotransferase 1, [RH, Score=667, Expect=0.0]; ENSG00000138653, NDST4, N-deacetylase and N-sulfotransferase 4, [RH, Score=661, Expect=0.0]} {Mouse: ENSMUSG00000027977, Ndst3, N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3, [RH, Score=683, Expect=0.0]; ENSMUSG00000039308, Ndst2, N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2, [RH, Score=679, Expect=0.0]; ENSMUSG00000027971, Ndst4, N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4, [RH, Score=669, Expect=0.0]; ENSMUSG00000054008, Ndst1, N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1, [RH, Score=666, Expect=0.0]} {Dmel: FBgn0020251, sfl, sulfateless, [RH, Score=716, Expect=0.0]} {Celegans: WBGene00002028, hst-1, Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 Heparan sulfate N-deacetylase 1 Heparan sulfate N-sulfotransferase 1, [RH, Score=605, Expect=0.0]} {Smed: dd_Smed_v6_12192_0_2, dd_Smed_v6_12192_0_2, [RH, Score=541, Expect=8e-179]} {RNA1509_9775} {RNA1310_5396, RNA1509_9775} {RNA1509_9775, RNA815_1944} |
Berezikov Lab - 2020-2021 © ERIBA