Data search


search
Exact
Search

Results for MligTC455_42864

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_42864 708 14.76 Mlig455_015796, Mlig455_045760

Neo: -

Age: logFC(26M/2M)=-0.253

MINDY4

Mlig455_015796 {REF} {Length: 5062} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4205) [PF13898.8, score=179.9]} {Human: ENSG00000106125, MINDY4, MINDY lysine 48 deubiquitinase 4, [Score=113, Expect=1e-24]} {Mouse: ENSMUSG00000038022, Mindy4, MINDY lysine 48 deubiquitinase 4, [Score=127, Expect=3e-29]} {Dmel: FBgn0036143, CG14142, [Score=86.3, Expect=5e-17]} {Smed: dd_Smed_v6_13105_0_1, dd_Smed_v6_13105_0_1, [RH, Score=99.0, Expect=8e-21]} {RNA1509_19414} {RNA1310_5390.2, RNA1509_19414} {RNA1509_19414, RNA815_2292}

Mlig455_045760 {REF} {Length: 5069} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4205) [PF13898.8, score=177.8]} {Human: ENSG00000106125, MINDY4, MINDY lysine 48 deubiquitinase 4, [Score=112, Expect=2e-24]} {Mouse: ENSMUSG00000038022, Mindy4, MINDY lysine 48 deubiquitinase 4, [Score=126, Expect=6e-29]} {Dmel: FBgn0036143, CG14142, [Score=85.5, Expect=8e-17]} {Smed: dd_Smed_v6_13105_0_1, dd_Smed_v6_13105_0_1, [RH, Score=98.2, Expect=1e-20]} {RNA1509_19414} {RNA1310_5390.2} {RNA815_2292}

Cumulative graph for MligTC455_42864

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.988 4.114 0.36574 1.00000
RegionR2 0.164 4.114 0.75755 1.00000
RegionR3 -1.186 4.114 0.01157 0.16906
RegionR4 0.563 4.114 0.28017 0.58766
RegionR5 0.682 4.114 0.05872 0.21010
RegionR6 -0.835 4.114 0.06382 0.47359
RegionR7 0.375 4.114 0.47829 1.00000
RegionR8 -0.751 4.114 0.33489 0.96768

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.92 4.114 0.44876 1.00000
RegenerationR2 -0.018 4.114 0.96768 1.00000
RegenerationR3 1.005 4.114 0.06042 0.41862
RegenerationR4 -0.178 4.114 0.73273 0.96505
RegenerationR5 0.163 4.114 0.71542 0.95811
RegenerationR6 0.757 4.114 0.14672 0.46929
RegenerationBL 0.912 4.114 0.11836 0.40748
RegenerationTP -0.555 4.114 0.43413 0.85576


Genes with expression patterns similar to MligTC455_42864

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_42864 708 14.76 Mlig455_015796, Mlig455_045760

Neo: -

Age: logFC(26M/2M)=-0.253

MINDY4 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_015796 {REF} {Length: 5062} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4205) [PF13898.8, score=179.9]} {Human: ENSG00000106125, MINDY4, MINDY lysine 48 deubiquitinase 4, [Score=113, Expect=1e-24]} {Mouse: ENSMUSG00000038022, Mindy4, MINDY lysine 48 deubiquitinase 4, [Score=127, Expect=3e-29]} {Dmel: FBgn0036143, CG14142, [Score=86.3, Expect=5e-17]} {Smed: dd_Smed_v6_13105_0_1, dd_Smed_v6_13105_0_1, [RH, Score=99.0, Expect=8e-21]} {RNA1509_19414} {RNA1310_5390.2, RNA1509_19414} {RNA1509_19414, RNA815_2292}

Mlig455_045760 {REF} {Length: 5069} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4205) [PF13898.8, score=177.8]} {Human: ENSG00000106125, MINDY4, MINDY lysine 48 deubiquitinase 4, [Score=112, Expect=2e-24]} {Mouse: ENSMUSG00000038022, Mindy4, MINDY lysine 48 deubiquitinase 4, [Score=126, Expect=6e-29]} {Dmel: FBgn0036143, CG14142, [Score=85.5, Expect=8e-17]} {Smed: dd_Smed_v6_13105_0_1, dd_Smed_v6_13105_0_1, [RH, Score=98.2, Expect=1e-20]} {RNA1509_19414} {RNA1310_5390.2} {RNA815_2292}
2. MligTC455_23790 453 9.43 Mlig455_009423

Neo: -

Age: logFC(26M/2M)=0.217

1.796 - - - 0.842 - 0.954 Mlig455_009423 {REF} {Length: 6863} {TRANSSPLICED} {RNA1509_36669, RNA1509_39243, RNA1509_40806, RNA1509_60010} {RNA1310_11105, RNA1509_36669, RNA1509_40806, RNA1509_60010} {RNA1509_36669, RNA1509_40806, RNA1509_60010, RNA815_1240.1}
3. MligTC455_35457 590 12.3 Mlig455_025018

Neo: -

Age: -

Region-enriched R5: 1.112/0.00472

TRAPPC8 1.78 - - 0.794 - - 0.986 Mlig455_025018 {REF} {Length: 7696} {Pfam: ER-Golgi trafficking TRAPP I complex 85 kDa subunit [PF12739.9, score=353.3]} {Human: ENSG00000153339, TRAPPC8, trafficking protein particle complex 8, [RH, Score=546, Expect=1e-170]} {Mouse: ENSMUSG00000033382, Trappc8, trafficking protein particle complex 8, [RH, Score=541, Expect=2e-168]} {Dmel: FBgn0260655, l(3)76BDm, lethal (3) 76BDm, [Score=393, Expect=2e-115]} {Celegans: WBGene00018512, trpp-8, TRansport Protein Particle, [RH, Score=162, Expect=4e-40]} {Smed: dd_Smed_v6_7549_0_1, dd_Smed_v6_7549_0_1, [RH, Score=616, Expect=0.0]} {RNA1509_3381} {RNA1310_1277, RNA1509_3381} {RNA1509_3381, RNA815_2844}
4. MligTC455_41381 1161 24.19 Mlig455_057022

Neo: -

Age: -

ATAD1 1.779 - 0.823 - - - 0.956 Mlig455_057022 {REF} {Length: 2357} {TRANSSPLICED} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=121.3]; AAA+ lid domain [PF17862.3, score=27.8]; AAA ATPase domain [PF13191.8, score=22.6]; AAA domain (dynein-related subfamily) [PF07728.16, score=22.4]; Protein of unknown function (DUF815) [PF05673.15, score=20.7]} {Human: ENSG00000283024, ATAD1, ATPase family, AAA domain containing 1, [RH, Score=294, Expect=7e-97]; ENSG00000138138, ATAD1, ATPase family, AAA domain containing 1, [RH, Score=294, Expect=7e-97]} {Mouse: ENSMUSG00000013662, Atad1, ATPase family, AAA domain containing 1, [RH, Score=294, Expect=5e-97]} {Dmel: FBgn0005322, nmd, no mitochondrial derivative, [RH, Score=308, Expect=1e-102]} {Celegans: WBGene00010557, mspn-1, Mitochondrial sorting homolog, [RH, Score=268, Expect=1e-87]} {Smed: dd_Smed_v6_3468_0_1, dd_Smed_v6_3468_0_1, [RH, Score=257, Expect=1e-82]} {RNA1509_10594, RNA1509_55644} {RNA1310_16934, RNA1509_10594, RNA1509_55644} {RNA1509_10594, RNA1509_55644, RNA815_15950}
5. MligTC455_37612 366 7.62 Mlig455_026659

Neo: Int S/G2/M

Age: -

Region-enriched R5: 3.326/0.00001

1.773 - - 0.821 - - 0.952 Mlig455_026659 {REF} {Length: 1882} {TRANSSPLICED} {RNA1509_32576, RNA1509_34929} {RNA1310_30559.1, RNA1509_32576, RNA1509_34929} {RNA1509_32576, RNA1509_34929, RNA815_13235.1}
6. MligTC455_45529 1112 23.17 Mlig455_023689

Neo: -

Age: -

TMEM33 1.739 - - 0.787 - - 0.952 Mlig455_023689 {REF} {Length: 1827} {TRANSSPLICED} {Pfam: Transmembrane protein 33/Nucleoporin POM33 [PF03661.15, score=200.5]} {Human: ENSG00000109133, TMEM33, transmembrane protein 33, [RH, Score=155, Expect=3e-46]} {Mouse: ENSMUSG00000037720, Tmem33, transmembrane protein 33, [RH, Score=157, Expect=8e-47]} {Dmel: FBgn0266449, Kr-h2, Kruppel homolog 2, [RH, Score=122, Expect=2e-33]} {Celegans: WBGene00012555, npp-25, Transmembrane protein 33 homolog, [RH, Score=127, Expect=4e-35]} {Smed: dd_Smed_v6_3358_0_1, dd_Smed_v6_3358_0_1, [RH, Score=130, Expect=1e-36]} {RNA1509_16724, RNA1509_21588, RNA1509_21640} {RNA1310_15997.2, RNA1509_16724, RNA1509_21588, RNA1509_21640} {RNA1509_16724, RNA1509_21588, RNA1509_21640, RNA815_544.2}
7. MligTC455_48262 167 3.47 Mlig455_037637

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.292

1.668 0.715 - - - - 0.953 Mlig455_037637 {REF} {Length: 3078} {TRANSSPLICED} {RNA1509_35832, RNA1509_49883} {RNA1310_18334.1, RNA1509_35832, RNA1509_49883} {RNA1509_35832, RNA1509_49883, RNA815_7372}
8. MligTC455_29520 443 9.23 Mlig455_049325

Neo: -

Age: -

0.99 - - - - - 0.990 Mlig455_049325 {REF} {Length: 835} {NoTransDecoderORF} {RNA1509_50454} {RNA1310_46564} {RNA815_35755}
9. MligTC455_29521 442 9.22 Mlig455_049335

Neo: -

Age: -

PRKAB2 0.988 - - - - - 0.988 Mlig455_049335 {REF} {Length: 3983} {TRANSSPLICED} {Pfam: Glycogen recognition site of AMP-activated protein kinase [PF16561.7, score=111.2]; 5'-AMP-activated protein kinase beta subunit, interaction domain [PF04739.17, score=89.0]; Starch/carbohydrate-binding module (family 53) [PF16760.7, score=21.0]; Carbohydrate-binding module 48 (Isoamylase N-terminal domain) [PF02922.20, score=20.1]} {Human: ENSG00000131791, PRKAB2, protein kinase AMP-activated non-catalytic subunit beta 2, [RH, Score=238, Expect=1e-77]; ENSG00000111725, PRKAB1, protein kinase AMP-activated non-catalytic subunit beta 1, [RH, Score=233, Expect=1e-75]} {Mouse: ENSMUSG00000038205, Prkab2, protein kinase, AMP-activated, beta 2 non-catalytic subunit, [RH, Score=237, Expect=1e-77]; ENSMUSG00000029513, Prkab1, protein kinase, AMP-activated, beta 1 non-catalytic subunit, [RH, Score=234, Expect=4e-76]} {Dmel: FBgn0260972, alc, alicorn, [RH, Score=202, Expect=4e-63]} {Celegans: WBGene00010115, aakb-1, AMP-Activated Kinase Beta subunit, [RH, Score=218, Expect=2e-70]} {Smed: dd_Smed_v6_4735_0_1, dd_Smed_v6_4735_0_1, [RH, Score=225, Expect=3e-72]} {RNA1509_18723, RNA1509_50031, RNA1509_50454, RNA1509_52608} {RNA1310_30146, RNA1509_18723, RNA1509_50031, RNA1509_50454, RNA1509_52608} {RNA1509_18723, RNA1509_50031, RNA1509_50454, RNA1509_52608, RNA815_15840}
10. MligTC455_40919 443 9.23 Mlig455_018626, Mlig455_018813

Neo: Irradiation

Age: -

MED14 0.973 - - - - - 0.973

Mlig455_018626 {REF} {Length: 4965} {TRANSSPLICED} {Pfam: Mediator complex subunit MED14 [PF08638.13, score=152.7]} {Human: ENSG00000180182, MED14, mediator complex subunit 14, [RH, Score=301, Expect=9e-84]} {Mouse: ENSMUSG00000064127, Med14, mediator complex subunit 14, [RH, Score=300, Expect=1e-87]} {Dmel: FBgn0035145, MED14, Mediator complex subunit 14, [RH, Score=306, Expect=2e-85]} {Celegans: WBGene00004343, rgr-1, Mediator of RNA polymerase II transcription subunit 14, [RH, Score=212, Expect=2e-55]} {Smed: dd_Smed_v6_6370_0_1, dd_Smed_v6_6370_0_1, [RH, Score=227, Expect=1e-60]} {RNA1509_12048} {RNA1310_5782.2, RNA1509_12048} {RNA1509_12048, RNA815_22099}

Mlig455_018813 {REF} {Length: 4732} {TRANSSPLICED} {Pfam: Mediator complex subunit MED14 [PF08638.13, score=152.7]} {Human: ENSG00000180182, MED14, mediator complex subunit 14, [RH, Score=300, Expect=4e-83]} {Mouse: ENSMUSG00000064127, Med14, mediator complex subunit 14, [RH, Score=299, Expect=6e-83]} {Dmel: FBgn0035145, MED14, Mediator complex subunit 14, [RH, Score=303, Expect=2e-84]} {Celegans: WBGene00004343, rgr-1, Mediator of RNA polymerase II transcription subunit 14, [RH, Score=213, Expect=1e-55]} {Smed: dd_Smed_v6_6370_0_1, dd_Smed_v6_6370_0_1, [RH, Score=226, Expect=3e-60]} {RNA1509_12048} {RNA1310_5782.2} {RNA815_22099}
11. MligTC455_46244 565 11.77 Mlig455_047142

Neo: -

Age: -

Region-enriched R5: 1.292/0.00554

TPD52L2 0.967 - - - - - 0.967 Mlig455_047142 {REF} {Length: 1953} {TRANSSPLICED} {Pfam: Tumour protein D52 family [PF04201.17, score=81.6]} {Human: ENSG00000101150, TPD52L2, tumor protein D52 like 2, [RH, Score=85.5, Expect=8e-21]} {Mouse: ENSMUSG00000000827, Tpd52l2, tumor protein D52-like 2, [RH, Score=86.3, Expect=4e-21]} {Dmel: FBgn0034345, CG5174, [RH, Score=129, Expect=8e-38]} {Celegans: WBGene00008745, F13E6.1, [RH, Score=94.4, Expect=3e-24]} {Smed: dd_Smed_v6_2842_0_6, dd_Smed_v6_2842_0_6, [RH, Score=107, Expect=3e-29]} {RNA1509_12270, RNA1509_21203} {RNA1310_21452, RNA1509_12270, RNA1509_21203} {RNA1509_12270, RNA1509_21203, RNA815_15960.1}
12. MligTC455_15249 717 14.93 Mlig455_066749

Neo: -

Age: -

RBM12 0.963 - - - - - 0.963 Mlig455_066749 {REF} {Length: 3255} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=27.4]} {Human: ENSG00000244462, RBM12, RNA binding motif protein 12, [Score=94.0, Expect=6e-19]; ENSG00000183808, RBM12B, RNA binding motif protein 12B, [Score=89.4, Expect=2e-17]} {Mouse: ENSMUSG00000089824, Rbm12, RNA binding motif protein 12, [Score=94.7, Expect=3e-19]; ENSMUSG00000098950, Gm28036, predicted gene, 28036, [Score=92.8, Expect=8e-19]} {Dmel: FBgn0035235, CG7879, [RH, Score=117, Expect=1e-26]} {Celegans: WBGene00013703, Y106G6D.7, [RH, Score=98.2, Expect=1e-20]} {Smed: dd_Smed_v6_5908_0_1, dd_Smed_v6_5908_0_1, [RH, Score=106, Expect=2e-23]} {RNA1509_7941} {RNA1310_4040.1} {RNA815_10772}
13. MligTC455_34347 673 14.03 Mlig455_022881

Neo: -

Age: -

0.959 - - - - - 0.959 Mlig455_022881 {REF} {Length: 2658} {TRANSSPLICED} {RNA1509_15487, RNA1509_24873, RNA1509_35304, RNA1509_40775, RNA1509_47924, RNA1509_53278, RNA1509_57914} {RNA1310_44954, RNA1509_15487, RNA1509_24873, RNA1509_35304, RNA1509_40775, RNA1509_47924, RNA1509_53278, RNA1509_57914} {RNA1509_15487, RNA1509_24873, RNA1509_35304, RNA1509_40775, RNA1509_47924, RNA1509_53278, RNA1509_57914, RNA815_22875}
14. MligTC455_26370 803 16.73 Mlig455_026051

Neo: -

Age: Up-Down-Down

DDB1 0.957 - - - - - 0.957 Mlig455_026051 {REF} {Length: 4654} {Pfam: Mono-functional DNA-alkylating methyl methanesulfonate N-term [PF10433.11, score=294.6]; CPSF A subunit region [PF03178.17, score=224.8]} {Human: ENSG00000167986, DDB1, damage specific DNA binding protein 1, [RH, Score=975, Expect=0.0]} {Mouse: ENSMUSG00000024740, Ddb1, damage specific DNA binding protein 1, [RH, Score=979, Expect=0.0]} {Dmel: FBgn0260962, pic, piccolo, [RH, Score=892, Expect=0.0]} {Celegans: WBGene00010890, ddb-1, DNA damage-binding protein 1, [RH, Score=597, Expect=0.0]} {Smed: dd_Smed_v6_4952_0_1, dd_Smed_v6_4952_0_1, [RH, Score=605, Expect=0.0]} {RNA1509_6460} {RNA1310_1777.1, RNA1509_6460} {RNA1509_6460, RNA815_1989}
15. MligTC455_18952 584 12.17 Mlig455_051281

Neo: -

Age: -

Region-enriched R5: 1.666/0.02584

MEMO1 0.954 - - - - - 0.954 Mlig455_051281 {REF} {Length: 2521} {TRANSSPLICED} {Pfam: Memo-like protein [PF01875.19, score=222.6]} {Human: ENSG00000162959, MEMO1, mediator of cell motility 1, [Score=253, Expect=3e-82]} {Mouse: ENSMUSG00000058704, Memo1, mediator of cell motility 1, [Score=253, Expect=9e-83]} {Dmel: FBgn0038110, CG8031, [Score=270, Expect=1e-89]} {Celegans: WBGene00016500, memo-1, Protein memo-1 homolog, [Score=231, Expect=2e-74]} {Smed: dd_Smed_v6_4673_0_1, dd_Smed_v6_4673_0_1, [Score=273, Expect=7e-91]} {RNA1509_36392} {RNA1310_34170.1, RNA1509_36392} {RNA1509_36392, RNA815_12170}
16. MligTC455_23670 661 13.78 Mlig455_003202

Neo: Irradiation

Age: -

XRN2 0.953 - - - - - 0.953 Mlig455_003202 {REF} {Length: 3715} {TRANSSPLICED} {Pfam: Xrn1 helical domain [PF17846.3, score=514.1]; XRN 5'-3' exonuclease N-terminus [PF03159.20, score=336.1]} {Human: ENSG00000088930, XRN2, 5'-3' exoribonuclease 2, [RH, Score=951, Expect=0.0]} {Mouse: ENSMUSG00000027433, Xrn2, 5'-3' exoribonuclease 2, [RH, Score=946, Expect=0.0]} {Dmel: FBgn0031868, Rat1, Rat1 5'-3' exoribonuclease, [RH, Score=884, Expect=0.0]} {Celegans: WBGene00006964, xrn-2, 5'-3' exoribonuclease 2 homolog, [RH, Score=902, Expect=0.0]} {Smed: dd_Smed_v6_3463_0_1, dd_Smed_v6_3463_0_1, [RH, Score=964, Expect=0.0]} {RNA1509_1472, RNA1509_22392} {RNA1310_2139.1, RNA1509_22392} {RNA1509_22392, RNA815_2958}
17. MligTC455_29046 32 0.67 Mlig455_063674

Neo: -

Age: Up-Down-Up

UBR4 0.953 - - - - - 0.953 Mlig455_063674 {REF} {Length: 3549} {Pfam: E3 ubiquitin-protein ligase UBR4 [PF13764.8, score=838.0]} {Human: ENSG00000127481, UBR4, ubiquitin protein ligase E3 component n-recognin 4, [Score=530, Expect=7e-162]} {Mouse: ENSMUSG00000066036, Ubr4, ubiquitin protein ligase E3 component n-recognin 4, [Score=528, Expect=5e-161]} {Dmel: FBgn0011230, poe, purity of essence, [Score=444, Expect=8e-133]} {Celegans: WBGene00016650, ubr-4, UBR E3 ubiquitin ligase homolog, [Score=242, Expect=2e-65]} {Smed: dd_Smed_v6_2422_0_1, dd_Smed_v6_2422_0_1, [Score=189, Expect=1e-48]} {RNA1509_31376} {RNA1310_384.1} {RNA815_217.1}
18. MligTC455_48550 2150 44.79 Mlig455_025093, Mlig455_025098

Neo: -

Age: -

TLK2 0.953 - - - - - 0.953

Mlig455_025093 {REF} {Length: 5109} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=174.2]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=97.4]} {Human: ENSG00000146872, TLK2, tousled like kinase 2, [RH, Score=511, Expect=9e-170]} {Mouse: ENSMUSG00000020694, Tlk2, tousled-like kinase 2 (Arabidopsis), [RH, Score=511, Expect=6e-170]} {Dmel: FBgn0283657, Tlk, Tousled-like kinase, [Score=442, Expect=3e-138]} {Celegans: WBGene00006579, tlk-1, Serine/threonine-protein kinase tousled-like 1, [Score=440, Expect=5e-141]} {Smed: dd_Smed_v6_6431_0_1, dd_Smed_v6_6431_0_1, [Score=515, Expect=6e-174]} {RNA1509_8060} {RNA1310_6226} {RNA815_3540}

Mlig455_025098 {REF} {Length: 5172} {Pfam: Protein kinase domain [PF00069.27, score=195.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=106.5]} {Human: ENSG00000146872, TLK2, tousled like kinase 2, [RH, Score=536, Expect=2e-178]; ENSG00000198586, TLK1, tousled like kinase 1, [RH, Score=517, Expect=6e-171]} {Mouse: ENSMUSG00000020694, Tlk2, tousled-like kinase 2 (Arabidopsis), [RH, Score=535, Expect=2e-178]; ENSMUSG00000041997, Tlk1, tousled-like kinase 1, [RH, Score=518, Expect=9e-172]} {Dmel: FBgn0283657, Tlk, Tousled-like kinase, [RH, Score=474, Expect=1e-147]} {Celegans: WBGene00006579, tlk-1, Serine/threonine-protein kinase tousled-like 1, [RH, Score=476, Expect=2e-153]} {Smed: dd_Smed_v6_6431_0_1, dd_Smed_v6_6431_0_1, [RH, Score=575, Expect=0.0]} {RNA1509_29351, RNA1509_8060} {RNA1310_6226, RNA1509_29351, RNA1509_8060} {RNA1509_29351, RNA1509_8060, RNA815_3540}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA