M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_43564

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_43564 852 17.76 Mlig455_010345

Neo: -

Age: logFC(26M/2M)=0.757

Region-specific R5: 2.049

Region-enriched R5: 1.969/0.00000

 PLD6 Mlig455_010345 {REF} {Length: 936} {TRANSSPLICED} {Pfam: PLD-like domain [PF13091.8, score=97.6]} {Human: ENSG00000179598, PLD6, phospholipase D family member 6, [RH, Score=112, Expect=1e-29]} {Mouse: ENSMUSG00000043648, Pld6, phospholipase D family, member 6, [RH, Score=115, Expect=3e-31]} {Dmel: FBgn0261266, zuc, zucchini, [RH, Score=110, Expect=2e-29]} {Smed: dd_Smed_v6_11719_0_2, dd_Smed_v6_11719_0_2, [RH, Score=99.0, Expect=5e-25]} {RNA1509_26144} {RNA1310_37212} {RNA815_17664}

Cumulative graph for MligTC455_43564

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.439 4.527 0.27187 0.92216
RegionR2 -0.311 4.527 0.49893 0.87868
RegionR3 -0.186 4.527 0.63429 1.00000
RegionR4 0.808 4.527 0.04335 0.17500
RegionR5 1.969 4.527 0.00000 0.00000 Specific for R5: 2.049
RegionR6 0.58 4.527 0.10068 0.58260
RegionR7 -0.206 4.527 0.69327 1.00000
RegionR8 -1.215 4.527 0.10387 0.60213

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.027 4.527 0.55282 1.00000
RegenerationR2 0.32 4.527 0.32322 0.76128
RegenerationR3 0.681 4.527 0.05769 0.41231
RegenerationR4 0.305 4.527 0.38495 0.80429
RegenerationR5 -0.342 4.527 0.22699 0.66116
RegenerationR6 0.041 4.527 0.90502 1.00000
RegenerationBL 0.377 4.527 0.44834 0.81530
RegenerationTP 0.571 4.527 0.32686 0.77151


Genes with expression patterns similar to MligTC455_43564

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_43564 852 17.76 Mlig455_010345

Neo: -

Age: logFC(26M/2M)=0.757

Region-specific R5: 2.049

Region-enriched R5: 1.969/0.00000

 PLD6 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_010345 {REF} {Length: 936} {TRANSSPLICED} {Pfam: PLD-like domain [PF13091.8, score=97.6]} {Human: ENSG00000179598, PLD6, phospholipase D family member 6, [RH, Score=112, Expect=1e-29]} {Mouse: ENSMUSG00000043648, Pld6, phospholipase D family, member 6, [RH, Score=115, Expect=3e-31]} {Dmel: FBgn0261266, zuc, zucchini, [RH, Score=110, Expect=2e-29]} {Smed: dd_Smed_v6_11719_0_2, dd_Smed_v6_11719_0_2, [RH, Score=99.0, Expect=5e-25]} {RNA1509_26144} {RNA1310_37212} {RNA815_17664}
2. MligTC455_43563 1015 21.15 Mlig455_009843

Neo: Irradiation

Age: Down-Up-Up, logFC(26M/2M)=0.329

Region-specific R5: 2.152

Region-enriched R5: 2.058/0.00000

 PLD6 5.642 0.937 0.988 0.978 0.868 0.881 0.990 Mlig455_009843 {REF} {Length: 936} {TRANSSPLICED} {Pfam: PLD-like domain [PF13091.8, score=97.1]} {Human: ENSG00000179598, PLD6, phospholipase D family member 6, [RH, Score=112, Expect=1e-29]} {Mouse: ENSMUSG00000043648, Pld6, phospholipase D family, member 6, [RH, Score=115, Expect=3e-31]} {Dmel: FBgn0261266, zuc, zucchini, [RH, Score=111, Expect=2e-29]} {Smed: dd_Smed_v6_11719_0_2, dd_Smed_v6_11719_0_2, [RH, Score=98.2, Expect=9e-25]} {RNA1509_19315, RNA1509_26144} {RNA1310_37212, RNA1509_19315, RNA1509_26144} {RNA1509_19315, RNA1509_26144, RNA815_17664}
3. MligTC455_47580 1441 30.01 Mlig455_023584

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.781

Region-specific R5: 2.414

Region-enriched R5: 2.374/0.00000

 C19orf12 4.325 0.842 0.849 0.781 - 0.902 0.951 Mlig455_023584 {REF} {Length: 651} {TRANSSPLICED} {Human: ENSG00000131943, C19orf12, chromosome 19 open reading frame 12, [Score=70.1, Expect=2e-15]} {Mouse: ENSMUSG00000054676, 1600014C10Rik, RIKEN cDNA 1600014C10 gene, [Score=80.9, Expect=6e-20]} {Dmel: FBgn0023530, CG3740, [Score=69.3, Expect=1e-15]} {RNA1509_54973} {RNA1310_48313.3} {RNA815_24031}
4. MligTC455_20987 1769 36.85 Mlig455_028383, Mlig455_035961

Neo: Irradiation

Age: -

Region-specific R5: 2.292

Region-enriched R5: 2.053/0.00000

 4.248 0.793 0.892 0.748 - 0.863 0.952

Mlig455_028383 {REF} {Length: 1097} {TRANSSPLICED} {Pfam: Geminin [PF07412.14, score=23.4]} {RNA1509_12313} {RNA1310_31319} {RNA815_14142}

Mlig455_035961 {REF} {Length: 1098} {TRANSSPLICED} {Pfam: Geminin [PF07412.14, score=23.1]} {RNA1509_12313} {RNA1310_31319} {RNA815_14142}
5. MligTC455_47907 644 13.42 Mlig455_035005

Neo: Irradiation

Age: logFC(26M/2M)=0.978

Region-enriched R5: 2.151/0.00000

 ZNF484 4.157 0.883 - 0.800 0.722 0.800 0.952 Mlig455_035005 {REF} {Length: 1895} {TRANSSPLICED} {Pfam: Activity-dependent neuroprotector homeobox protein N-terminal [PF19627.1, score=18.9]} {Human: ENSG00000127081, ZNF484, zinc finger protein 484, [Score=80.1, Expect=5e-15]; ENSG00000261221, ZNF865, zinc finger protein 865, [Score=76.3, Expect=8e-14]} {Mouse: ENSMUSG00000074405, Zfp865, zinc finger protein 865, [Score=76.6, Expect=4e-14]; ENSMUSG00000042063, Zfp386, zinc finger protein 386 (Kruppel-like), [Score=75.9, Expect=6e-14]} {Dmel: FBgn0002573, sens, senseless, [Score=65.5, Expect=7e-11]} {Celegans: WBGene00003909, pag-3, Zinc finger protein PAG-3, [Score=62.0, Expect=3e-10]} {Smed: dd_Smed_v6_14824_0_1, dd_Smed_v6_14824_0_1, [Score=58.5, Expect=4e-09]} {RNA1509_16533} {RNA1310_10660.1, RNA1509_16533} {RNA1509_16533, RNA815_21272.1}
6. MligTC455_47581 612 12.74 Mlig455_050168

Neo: -

Age: -

Region-specific R5: 3.044

Region-enriched R5: 2.304/0.00003

 C19orf12 4.053 0.802 0.707 0.798 - 0.789 0.957 Mlig455_050168 {REF} {Length: 762} {TRANSSPLICED} {Human: ENSG00000131943, C19orf12, chromosome 19 open reading frame 12, [RH, Score=71.6, Expect=3e-16]} {Mouse: ENSMUSG00000054676, 1600014C10Rik, RIKEN cDNA 1600014C10 gene, [RH, Score=82.4, Expect=1e-20]} {Dmel: FBgn0023530, CG3740, [RH, Score=69.3, Expect=1e-15]} {RNA1509_14124, RNA1509_19078, RNA1509_40112, RNA1509_54973} {RNA1310_48313.1, RNA1509_14124, RNA1509_19078, RNA1509_40112, RNA1509_54973} {RNA1509_14124, RNA1509_19078, RNA1509_40112, RNA1509_54973, RNA815_24031}
7. MligTC455_38864 2757 57.44 Mlig455_037911, Mlig455_038995

Neo: Neoblast, stringent

Age: Down-Up-Up

Region-enriched R5: 1.854/0.00000
Region-enriched R4: 1.085/0.03334

 GINS4 3.627 0.887 - - 0.899 0.886 0.955

Mlig455_037911 {REF} {Length: 1069} {TRANSSPLICED} {Pfam: DNA replication complex GINS protein SLD5 C-terminus [PF16922.7, score=37.1]} {Human: ENSG00000147536, GINS4, GINS complex subunit 4, [RH, Score=121, Expect=6e-33]} {Mouse: ENSMUSG00000031546, Gins4, GINS complex subunit 4 (Sld5 homolog), [RH, Score=122, Expect=1e-33]} {Smed: dd_Smed_v6_23589_0_1, dd_Smed_v6_23589_0_1, [RH, Score=50.1, Expect=2e-07]} {RNA1509_15804} {RNA1310_32959} {RNA815_15723}

Mlig455_038995 {REF} {Length: 1077} {TRANSSPLICED} {Pfam: DNA replication complex GINS protein SLD5 C-terminus [PF16922.7, score=36.9]} {Human: ENSG00000147536, GINS4, GINS complex subunit 4, [RH, Score=125, Expect=3e-34]} {Mouse: ENSMUSG00000031546, Gins4, GINS complex subunit 4 (Sld5 homolog), [RH, Score=125, Expect=2e-34]} {Smed: dd_Smed_v6_23589_0_1, dd_Smed_v6_23589_0_1, [RH, Score=50.1, Expect=2e-07]} {RNA1509_15804, RNA1509_44970, RNA1509_50438} {RNA1310_32959, RNA1509_15804, RNA1509_44970, RNA1509_50438} {RNA1509_15804, RNA1509_44970, RNA1509_50438, RNA815_15723}
8. MligTC455_43592 956 19.92 Mlig455_015053

Neo: Neoblast, stringent

Age: -

Region-enriched R5: 1.464/0.00058

 CDK1 3.443 - - 0.760 0.790 0.929 0.964 Mlig455_015053 {REF} {Length: 1680} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=253.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=124.7]; Haspin like kinase domain [PF12330.10, score=23.8]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=18.0]} {Human: ENSG00000170312, CDK1, cyclin dependent kinase 1, [RH, Score=412, Expect=6e-145]} {Mouse: ENSMUSG00000019942, Cdk1, cyclin-dependent kinase 1, [RH, Score=407, Expect=3e-143]} {Dmel: FBgn0004106, Cdk1, Cyclin-dependent kinase 1, [RH, Score=418, Expect=8e-148]} {Celegans: WBGene00000405, cdk-1, Cyclin-dependent kinase 1, [RH, Score=400, Expect=3e-140]} {Smed: dd_Smed_v6_31502_0_2, dd_Smed_v6_31502_0_2, [RH, Score=412, Expect=5e-145]} {RNA1509_21595, RNA1509_7104} {RNA1310_17831, RNA1509_21595, RNA1509_7104} {RNA1509_21595, RNA1509_7104, RNA815_7489.1}
9. MligTC455_41943 774 16.12 Mlig455_036733

Neo: Irradiation

Age: -

Region-enriched R5: 2.880/0.00000

 NETO2 2.637 0.809 0.866 - - - 0.962 Mlig455_036733 {REF} {Length: 2761} {TRANSSPLICED} {Pfam: CUB domain [PF00431.22, score=62.9]; Low-density lipoprotein receptor domain class A [PF00057.20, score=37.4]} {Human: ENSG00000171208, NETO2, neuropilin and tolloid like 2, [RH, Score=140, Expect=4e-35]; ENSG00000166342, NETO1, neuropilin and tolloid like 1, [RH, Score=134, Expect=8e-33]} {Mouse: ENSMUSG00000036902, Neto2, neuropilin (NRP) and tolloid (TLL)-like 2, [RH, Score=143, Expect=4e-36]} {Dmel: FBgn0265416, Neto, Neuropilin and tolloid-like, [RH, Score=124, Expect=2e-29]} {Celegans: WBGene00019360, neto-1, NETO (NEuropilin and TOlloid-like) homolog, [RH, Score=120, Expect=9e-30]} {Smed: dd_Smed_v6_10760_0_1, dd_Smed_v6_10760_0_1, [RH, Score=149, Expect=2e-38]} {RNA1509_31391} {RNA1310_7823} {RNA815_26060}
10. MligTC455_51527 779 16.22 Mlig455_020582

Neo: -

Age: logFC(26M/2M)=0.260

Region-enriched R5: 1.635/0.00251

 PPP1R3C 2.524 0.833 - - 0.741 0.950 - Mlig455_020582 {REF} {Length: 2357} {Pfam: Carbohydrate/starch-binding module (family 21) [PF03370.15, score=91.5]; Starch/carbohydrate-binding module (family 53) [PF16760.7, score=57.8]} {Human: ENSG00000119938, PPP1R3C, protein phosphatase 1 regulatory subunit 3C, [RH, Score=116, Expect=2e-29]} {Mouse: ENSMUSG00000046794, Ppp1r3b, protein phosphatase 1, regulatory subunit 3B, [RH, Score=110, Expect=1e-27]} {Celegans: WBGene00019211, H18N23.2, Protein phosphatase 1 regulatory subunit, [Score=110, Expect=2e-27]} {Smed: dd_Smed_v6_1526_0_1, dd_Smed_v6_1526_0_1, [RH, Score=93.2, Expect=2e-21]} {RNA1509_25707, RNA1509_35381} {RNA1310_14103, RNA1509_25707, RNA1509_35381} {RNA1509_25707, RNA1509_35381, RNA815_5179}
11. MligTC455_16141 1644 34.25 Mlig455_064276

Neo: Irradiation

Age: Down-Down-Up

Region-enriched R5: 1.589/0.00000

 HPDL 2.515 0.808 - - - 0.757 0.950 Mlig455_064276 {REF} {Length: 1629} {TRANSSPLICED} {Pfam: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily [PF00903.27, score=26.5]; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily [PF13669.8, score=23.0]} {Human: ENSG00000186603, HPDL, 4-hydroxyphenylpyruvate dioxygenase like, [RH, Score=120, Expect=5e-30]} {Mouse: ENSMUSG00000043155, Hpdl, 4-hydroxyphenylpyruvate dioxygenase-like, [RH, Score=127, Expect=1e-32]} {Dmel: FBgn0036992, CG11796, [Score=103, Expect=7e-25]} {Celegans: WBGene00016294, C31H2.4, Putative protein C31H2.4, [Score=103, Expect=2e-24]} {Smed: dd_Smed_v6_13579_0_1, dd_Smed_v6_13579_0_1, [RH, Score=166, Expect=1e-47]} {RNA1509_3068} {RNA1310_18738} {RNA815_12614}
12. MligTC455_36876 1344 28 Mlig455_050382

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.715

Region-enriched R5: 1.207/0.00006
Region-enriched R4: 1.032/0.02458

 2.49 - - 0.786 0.962 0.742 - Mlig455_050382 {REF} {Length: 958} {TRANSSPLICED} {Pfam: Dienelactone hydrolase family [PF01738.20, score=57.6]} {Smed: dd_Smed_v6_2062_0_1, dd_Smed_v6_2062_0_1, [RH, Score=170, Expect=3e-52]} {RNA1509_13663, RNA1509_37934, RNA1509_57231} {RNA1310_33560, RNA1509_13663, RNA1509_37934, RNA1509_57231} {RNA1509_13663, RNA1509_37934, RNA1509_57231, RNA815_22422}
13. MligTC455_49320 971 20.23 Mlig455_019078, Mlig455_064290

Neo: Irradiation

Age: -

Region-enriched R5: 1.946/0.00002

 2.435 0.709 0.770 - - - 0.956

Mlig455_019078 {REF} {Length: 3238} {Mouse: ENSMUSG00000040033, Stat2, signal transducer and activator of transcription 2, [Score=50.1, Expect=8e-06]} {Smed: dd_Smed_v6_2170_0_1, dd_Smed_v6_2170_0_1, [RH, Score=197, Expect=2e-55]} {RNA1509_14513} {RNA1310_10976.1, RNA1509_14513} {RNA1509_14513, RNA815_24594}

Mlig455_064290 {REF} {Length: 2997} {Smed: dd_Smed_v6_2170_0_1, dd_Smed_v6_2170_0_1, [RH, Score=197, Expect=2e-55]} {RNA1509_14513, RNA1509_46345} {RNA1310_10976.1, RNA1509_46345} {RNA1509_46345, RNA815_24594}
14. MligTC455_52060 860 17.92 Mlig455_020170

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.363

 1.808 - - 0.834 - - 0.974 Mlig455_020170 {REF} {Length: 1703} {TRANSSPLICED} {Pfam: Mid-1-related chloride channel (MCLC) [PF05934.13, score=24.2]} {RNA1509_45538} {RNA1310_18152, RNA1509_45538} {RNA1509_45538, RNA815_7271}
15. MligTC455_48053 428 8.91 Mlig455_030322

Neo: -

Age: -

Region-enriched R5: 1.688/0.01804

 1.756 - - 0.951 - - 0.805 Mlig455_030322 {REF} {Length: 2055} {TRANSSPLICED} {Smed: dd_Smed_v6_7312_0_1, dd_Smed_v6_7312_0_1, [RH, Score=64.7, Expect=5e-11]} {RNA1509_33109, RNA1509_48332} {RNA1310_20980.1, RNA1509_33109, RNA1509_48332} {RNA1509_33109, RNA1509_48332, RNA815_15206}
16. MligTC455_14946 482 10.03 Mlig455_014061

Neo: -

Age: -

Region-enriched R5: 2.310/0.00310

 1.745 - - 0.789 - 0.956 - Mlig455_014061 {REF} {Length: 2496} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=54.6]} {Smed: dd_Smed_v6_6819_0_1, dd_Smed_v6_6819_0_1, [Score=92.8, Expect=4e-21]} {RNA1509_19514} {RNA1310_8869.2} {RNA815_3347.1}
17. MligTC455_37971 714 14.87 Mlig455_066094

Neo: -

Age: Down-Up-Down

 PAQR3 1.736 - - 0.748 - 0.988 - Mlig455_066094 {REF} {Length: 1384} {TRANSSPLICED} {Pfam: Haemolysin-III related [PF03006.22, score=159.0]} {Human: ENSG00000163291, PAQR3, progestin and adipoQ receptor family member 3, [RH, Score=224, Expect=8e-71]} {Mouse: ENSMUSG00000055725, Paqr3, progestin and adipoQ receptor family member III, [RH, Score=224, Expect=3e-71]} {Dmel: FBgn0038256, CG7530, [RH, Score=173, Expect=3e-51]} {Celegans: WBGene00013457, paqr-3, Progestin and AdipoQ Receptor family, [Score=151, Expect=6e-43]} {Smed: dd_Smed_v6_10397_0_1, dd_Smed_v6_10397_0_1, [Score=209, Expect=1e-65]} {RNA1509_26005, RNA1509_39815} {RNA1310_2767.1, RNA1509_26005, RNA1509_39815} {RNA1509_26005, RNA1509_39815, RNA815_9793.1}
18. MligTC455_24177 1390 28.95 Mlig455_034202

Neo: -

Age: logFC(26M/2M)=0.443

Region-enriched R5: 1.223/0.01600

 PC 0.965 - - 0.965 - - - Mlig455_034202 {REF} {Length: 4942} {TRANSSPLICED} {Pfam: Carbamoyl-phosphate synthase L chain, ATP binding domain [PF02786.19, score=260.2]; Conserved carboxylase domain [PF02436.20, score=226.3]; Biotin carboxylase, N-terminal domain [PF00289.24, score=143.0]; Biotin carboxylase C-terminal domain [PF02785.21, score=107.6]; HMGL-like [PF00682.21, score=90.0]; Biotin-requiring enzyme [PF00364.24, score=55.9]; D-ala D-ala ligase C-terminus [PF07478.15, score=30.6]; Biotin-lipoyl like [PF13533.8, score=23.7]; ATP-grasp domain [PF02222.24, score=23.4]; Na(+)-translocating NADH-quinone reductase subunit A (NQRA) [PF05896.13, score=21.3]; HlyD family secretion protein [PF13437.8, score=20.8]} {Human: ENSG00000173599, PC, pyruvate carboxylase, [RH, Score=1476, Expect=0.0]} {Mouse: ENSMUSG00000024892, Pcx, pyruvate carboxylase, [RH, Score=1466, Expect=0.0]} {Dmel: FBgn0027580, PCB, Pyruvate carboxylase, [RH, Score=1524, Expect=0.0]} {Celegans: WBGene00004258, pyc-1, Pyruvate carboxylase 1, [RH, Score=1470, Expect=0.0]} {Smed: dd_Smed_v6_2393_0_1, dd_Smed_v6_2393_0_1, [RH, Score=1536, Expect=0.0]} {RNA1509_30437, RNA1509_35913, RNA1509_57702, RNA1509_886} {RNA1310_1164.1, RNA1509_30437, RNA1509_35913, RNA1509_57702, RNA1509_886} {RNA1509_30437, RNA1509_35913, RNA1509_57702, RNA1509_886, RNA815_728}
19. MligTC455_43099 279 5.81 Mlig455_040231

Neo: Int S/G2/M

Age: Down-Up-Down

Region-enriched R5: 1.572/0.00243

 ANAPC11 0.953 - - 0.953 - - - Mlig455_040231 {REF} {Length: 1837} {TRANSSPLICED} {Pfam: Anaphase-promoting complex subunit 11 RING-H2 finger [PF12861.9, score=135.1]; RING-H2 zinc finger domain [PF12678.9, score=80.4]; Ring finger domain [PF13639.8, score=32.0]} {Human: ENSG00000141552, ANAPC11, anaphase promoting complex subunit 11, [RH, Score=134, Expect=3e-42]} {Mouse: ENSMUSG00000025135, Anapc11, anaphase promoting complex subunit 11, [RH, Score=136, Expect=4e-43]} {Dmel: FBgn0250903, lmgA, lemming A, [RH, Score=136, Expect=3e-43]} {Celegans: WBGene00000145, apc-11, Anaphase-promoting complex subunit 11, [RH, Score=99.4, Expect=4e-28]} {Smed: dd_Smed_v6_3468_1_1, dd_Smed_v6_3468_1_1, [RH, Score=65.1, Expect=1e-15]} {RNA1509_23435} {RNA1310_20665, RNA1509_23435} {RNA1509_23435, RNA815_22424.1}
20. MligTC455_48467 443 9.23 Mlig455_001867

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.727/0.00001

 TRIM27 0.953 - - 0.953 - - - Mlig455_001867 {REF} {Length: 3460} {TRANSSPLICED} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=24.1]; zinc finger of C3HC4-type, RING [PF15227.8, score=22.3]} {Human: ENSG00000233948, TRIM27, tripartite motif containing 27, [RH, Score=51.2, Expect=3e-06]; ENSG00000237462, TRIM27, tripartite motif containing 27, [RH, Score=51.2, Expect=3e-06]} {Mouse: ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=53.1, Expect=2e-06]} {RNA1509_29275} {RNA1310_6643, RNA1509_29275} {RNA1509_29275, RNA815_6552}
21. MligTC455_10372 4993 104.02 Mlig455_028602

Neo: Int S/G2/M

Age: Down-Down-Down, logFC(26M/2M)=-0.968

 COPE 0.952 - - - - - 0.952 Mlig455_028602 {REF} {Length: 1166} {TRANSSPLICED} {Pfam: Coatomer epsilon subunit [PF04733.16, score=347.5]; Tetratricopeptide repeat [PF14559.8, score=26.0]; Tetratricopeptide repeat [PF13428.8, score=25.1]; Tetratricopeptide repeat [PF13424.8, score=24.5]; Tetratricopeptide repeat [PF07719.19, score=23.8]; Tetratricopeptide repeat [PF13432.8, score=22.1]; Anaphase-promoting complex, cyclosome, subunit 3 [PF12895.9, score=20.3]; Tetratricopeptide repeat [PF13176.8, score=19.2]; Tetratricopeptide repeat [PF00515.30, score=18.3]} {Human: ENSG00000105669, COPE, coatomer protein complex subunit epsilon, [RH, Score=335, Expect=6e-115]} {Mouse: ENSMUSG00000055681, Cope, coatomer protein complex, subunit epsilon, [RH, Score=332, Expect=7e-114]} {Dmel: FBgn0027496, epsilonCOP, Coat Protein (coatomer) epsilon, [RH, Score=168, Expect=4e-50]} {Celegans: WBGene00009732, cope-1, Coatomer subunit epsilon, [RH, Score=178, Expect=4e-54]} {Smed: dd_Smed_v6_1956_0_1, dd_Smed_v6_1956_0_1, [RH, Score=269, Expect=1e-89]} {RNA1509_3221} {RNA1310_24235.1} {RNA815_10191.1}
22. MligTC455_44356 1916 39.93 Mlig455_018537

Neo: Int S/G2/M

Age: -

Region-enriched R4: 1.181/0.00106

 0.952 - - - 0.952 - - Mlig455_018537 {REF} {Length: 1019} {TRANSSPLICED} {RNA1509_10153, RNA1509_26453, RNA1509_56095} {RNA1310_30932, RNA1509_10153, RNA1509_26453, RNA1509_56095} {RNA1509_10153, RNA1509_26453, RNA1509_56095, RNA815_15717}
23. MligTC455_10373 10137 211.18 Mlig455_028584, Mlig455_056914

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=0.821

 COPE 0.95 - - - - - 0.950

Mlig455_028584 {REF} {Length: 1159} {TRANSSPLICED} {Pfam: Coatomer epsilon subunit [PF04733.16, score=356.1]; Tetratricopeptide repeat [PF14559.8, score=28.6]; Tetratricopeptide repeat [PF13428.8, score=26.6]; Tetratricopeptide repeat [PF13424.8, score=24.7]; Tetratricopeptide repeat [PF07719.19, score=23.8]; Tetratricopeptide repeat [PF13432.8, score=21.4]; Anaphase-promoting complex, cyclosome, subunit 3 [PF12895.9, score=20.6]; Tetratricopeptide repeat [PF13176.8, score=19.2]} {Human: ENSG00000105669, COPE, coatomer protein complex subunit epsilon, [RH, Score=340, Expect=4e-117]} {Mouse: ENSMUSG00000055681, Cope, coatomer protein complex, subunit epsilon, [RH, Score=337, Expect=5e-116]} {Dmel: FBgn0027496, epsilonCOP, Coat Protein (coatomer) epsilon, [RH, Score=173, Expect=5e-52]} {Celegans: WBGene00009732, cope-1, Coatomer subunit epsilon, [RH, Score=184, Expect=2e-56]} {Smed: dd_Smed_v6_1956_0_1, dd_Smed_v6_1956_0_1, [RH, Score=275, Expect=6e-92]} {RNA1509_3221} {RNA1310_24235.1} {RNA815_10191.1}

Mlig455_056914 {REF} {Length: 6395} {Pfam: Coatomer epsilon subunit [PF04733.16, score=232.6]; Tetratricopeptide repeat [PF13424.8, score=26.5]; Tetratricopeptide repeat [PF13432.8, score=21.5]; Tetratricopeptide repeat [PF14559.8, score=20.8]; Tetratricopeptide repeat [PF13428.8, score=20.7]; Tetratricopeptide repeat [PF07719.19, score=19.9]} {Human: ENSG00000105669, COPE, coatomer protein complex subunit epsilon, [Score=225, Expect=6e-72]} {Mouse: ENSMUSG00000055681, Cope, coatomer protein complex, subunit epsilon, [Score=215, Expect=1e-68]} {Dmel: FBgn0027496, epsilonCOP, Coat Protein (coatomer) epsilon, [Score=111, Expect=1e-28]} {Celegans: WBGene00009732, cope-1, Coatomer subunit epsilon, [Score=100, Expect=9e-25]} {Smed: dd_Smed_v6_1956_0_1, dd_Smed_v6_1956_0_1, [Score=180, Expect=2e-55]} {RNA1509_37310} {RNA1310_5066} {RNA815_10191.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA