M. lignano Tomo-Seq
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Results for MligTC455_48053

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_48053 428 8.91 Mlig455_030322

Neo: -

Age: -

Region-enriched R5: 1.688/0.01804

 Mlig455_030322 {REF} {Length: 2055} {TRANSSPLICED} {Smed: dd_Smed_v6_7312_0_1, dd_Smed_v6_7312_0_1, [RH, Score=64.7, Expect=5e-11]} {RNA1509_33109, RNA1509_48332} {RNA1310_20980.1, RNA1509_33109, RNA1509_48332} {RNA1509_33109, RNA1509_48332, RNA815_15206}

Cumulative graph for MligTC455_48053

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.097 3.65 0.12165 0.71541
RegionR2 1.055 3.65 0.22357 0.59362
RegionR3 0.457 3.65 0.59753 1.00000
RegionR4 0.659 3.65 0.46159 0.78952
RegionR5 1.688 3.65 0.00209 0.01804
RegionR6 1.039 3.65 0.16973 0.72641
RegionR7 -0.4 3.65 0.94379 1.00000
RegionR8 1.599 3.65 0.11709 0.63125

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.573 3.65 0.99995 1.00000
RegenerationR2 0.075 3.65 0.85044 1.00000
RegenerationR3 0.203 3.65 0.66719 0.93614
RegenerationR4 0.13 3.65 0.77771 0.97970
RegenerationR5 -0.163 3.65 0.65606 0.93417
RegenerationR6 0.59 3.65 0.17264 0.50459
RegenerationBL 0.88 3.65 0.12253 0.41537
RegenerationTP 0.041 3.65 0.95139 1.00000


Genes with expression patterns similar to MligTC455_48053

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_48053 428 8.91 Mlig455_030322

Neo: -

Age: -

Region-enriched R5: 1.688/0.01804

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_030322 {REF} {Length: 2055} {TRANSSPLICED} {Smed: dd_Smed_v6_7312_0_1, dd_Smed_v6_7312_0_1, [RH, Score=64.7, Expect=5e-11]} {RNA1509_33109, RNA1509_48332} {RNA1310_20980.1, RNA1509_33109, RNA1509_48332} {RNA1509_33109, RNA1509_48332, RNA815_15206}
2. MligTC455_45954 1793 37.36 Mlig455_008402, Mlig455_008419

Neo: -

Age: Down-Up-Up

Region-enriched R4: 1.356/0.00665

 PDCD5 1.774 - - - 0.951 0.823 -

Mlig455_008402 {REF} {Length: 756} {TRANSSPLICED} {Pfam: Double-stranded DNA-binding domain [PF01984.22, score=92.4]} {Human: ENSG00000105185, PDCD5, programmed cell death 5, [RH, Score=92.8, Expect=5e-25]} {Mouse: ENSMUSG00000030417, Pdcd5, programmed cell death 5, [RH, Score=93.2, Expect=3e-25]} {Dmel: FBgn0036580, PDCD-5, Programmed Cell Death 5, [RH, Score=94.7, Expect=6e-26]} {Celegans: WBGene00008398, D2005.3, [RH, Score=85.5, Expect=2e-22]} {Smed: dd_Smed_v6_2989_0_1, dd_Smed_v6_2989_0_1, [RH, Score=89.0, Expect=4e-24]} {RNA1509_6475} {RNA1310_41588, RNA1509_6475} {RNA1509_6475, RNA815_22842.1}

Mlig455_008419 {REF} {Length: 748} {TRANSSPLICED} {Pfam: Double-stranded DNA-binding domain [PF01984.22, score=92.4]} {Human: ENSG00000105185, PDCD5, programmed cell death 5, [RH, Score=92.8, Expect=5e-25]} {Mouse: ENSMUSG00000030417, Pdcd5, programmed cell death 5, [RH, Score=93.2, Expect=3e-25]} {Dmel: FBgn0036580, PDCD-5, Programmed Cell Death 5, [RH, Score=94.7, Expect=6e-26]} {Celegans: WBGene00008398, D2005.3, [RH, Score=85.5, Expect=2e-22]} {Smed: dd_Smed_v6_2989_0_1, dd_Smed_v6_2989_0_1, [RH, Score=89.0, Expect=4e-24]} {RNA1509_6475} {RNA1310_41588} {RNA815_22842.1}
3. MligTC455_43564 852 17.76 Mlig455_010345

Neo: -

Age: logFC(26M/2M)=0.757

Region-specific R5: 2.049

Region-enriched R5: 1.969/0.00000

 PLD6 1.756 - - 0.951 - - 0.805 Mlig455_010345 {REF} {Length: 936} {TRANSSPLICED} {Pfam: PLD-like domain [PF13091.8, score=97.6]} {Human: ENSG00000179598, PLD6, phospholipase D family member 6, [RH, Score=112, Expect=1e-29]} {Mouse: ENSMUSG00000043648, Pld6, phospholipase D family, member 6, [RH, Score=115, Expect=3e-31]} {Dmel: FBgn0261266, zuc, zucchini, [RH, Score=110, Expect=2e-29]} {Smed: dd_Smed_v6_11719_0_2, dd_Smed_v6_11719_0_2, [RH, Score=99.0, Expect=5e-25]} {RNA1509_26144} {RNA1310_37212} {RNA815_17664}
4. MligTC455_27815 1267 26.39 Mlig455_003681, Mlig455_007743, Mlig455_008454, Mlig455_014548, Mlig455_019559, Mlig455_023634, Mlig455_026256, Mlig455_029577, Mlig455_043741, Mlig455_070803

Neo: -

Age: logFC(26M/2M)=0.722

Regeneration-upregulated BL: 2.777

Regeneration-enriched BL: 2.777

 0.962 - - - 0.962 - -

Mlig455_003681 {REF} {Length: 907} {RNA1509_8341} {RNA1310_50077} {RNA815_2170.1}

Mlig455_007743 {REF} {Length: 185} {NoTransDecoderORF} {RNA1509_8341} {RNA1310_76950} {RNA815_2170.1}

Mlig455_008454 {REF} {Length: 175} {NoTransDecoderORF} {RNA1509_8341} {RNA1310_76950} {RNA815_2170.1}

Mlig455_014548 {REF} {Length: 352} {RNA1509_8341} {RNA1310_50077} {RNA815_2170.1}

Mlig455_019559 {REF} {Length: 1856} {TRANSSPLICED} {RNA1509_8341} {RNA1310_843} {RNA815_2170.1}

Mlig455_023634 {REF} {Length: 1932} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_40233} {RNA1310_27331} {RNA815_2170.1}

Mlig455_026256 {REF} {Length: 1373} {RNA1509_13206} {RNA1310_1311.1} {RNA815_19414}

Mlig455_029577 {REF} {Length: 431} {RNA1509_40233} {RNA1310_27331} {RNA815_2170.2}

Mlig455_043741 {REF} {Length: 1856} {TRANSSPLICED} {RNA1509_8341} {RNA1310_843} {RNA815_2170.1}

Mlig455_070803 {REF} {Length: 7254} {RNA1509_55315} {RNA1310_14431} {RNA815_2170.1}
5. MligTC455_50066 1079 22.47 Mlig455_049427

Neo: -

Age: Up-Down-Down

 SEC31A 0.959 - - - 0.959 - - Mlig455_049427 {REF} {Length: 4739} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=28.2]; Sec23-binding domain of Sec16 [PF12931.9, score=24.1]} {Human: ENSG00000138674, SEC31A, SEC31 homolog A, COPII coat complex component, [RH, Score=607, Expect=0.0]} {Mouse: ENSMUSG00000035325, Sec31a, Sec31 homolog A (S. cerevisiae), [RH, Score=613, Expect=0.0]} {Dmel: FBgn0033339, Sec31, Secretory 31, [RH, Score=486, Expect=3e-151]} {Celegans: WBGene00011338, sec-31, Yeast SEC homolog, [RH, Score=148, Expect=7e-36]} {Smed: dd_Smed_v6_4230_0_1, dd_Smed_v6_4230_0_1, [RH, Score=490, Expect=1e-153]} {RNA1509_3243} {RNA1310_7977} {RNA815_4740}

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