TomoSeq data search

Data search

Results for MligTC455_43652

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_43652

2107

43.90

Mlig455_029978

Neo: -

Age: -

TMOD3

Mlig455_029978 {REF} {Length: 2972} {TRANSSPLICED} {Pfam: Tropomodulin [PF03250.16, score=185.9]} {Human: ENSG00000138594, TMOD3, tropomodulin 3, [RH, Score=224, Expect=4e-70]; ENSG00000128872, TMOD2, tropomodulin 2, [RH, Score=214, Expect=2e-66]} {Mouse: ENSMUSG00000058587, Tmod3, tropomodulin 3, [RH, Score=221, Expect=4e-69]; ENSMUSG00000032186, Tmod2, tropomodulin 2, [RH, Score=213, Expect=4e-66]; ENSMUSG00000028328, Tmod1, tropomodulin 1, [RH, Score=213, Expect=4e-66]} {Dmel: FBgn0082582, tmod, tropomodulin, [RH, Score=273, Expect=1e-87]} {Celegans: WBGene00006823, unc-94, Tropomodulin, [RH, Score=247, Expect=6e-79]} {Smed: dd_Smed_v6_3279_0_1, dd_Smed_v6_3279_0_1, [RH, Score=322, Expect=8e-109]} {RNA1509_1524, RNA1509_29918, RNA1509_52135, RNA1509_7985} {RNA1310_10808.2, RNA1509_29918, RNA1509_52135, RNA1509_7985} {RNA1509_29918, RNA1509_52135, RNA1509_7985, RNA815_3504.1}

Cumulative graph for MligTC455_43652

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.92	5.606	0.14429	0.75627
RegionR2	0.413	5.606	0.15557	0.49380
RegionR3	0.507	5.606	0.02003	0.23737
RegionR4	-0.445	5.606	0.10746	0.32262
RegionR5	0.3	5.606	0.13739	0.38014
RegionR6	0.587	5.606	0.00870	0.15420
RegionR7	-0.187	5.606	0.52118	1.00000
RegionR8	-0.256	5.606	0.47149	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	1.317	5.606	0.14600	0.88623
RegenerationR2	0.099	5.606	0.69802	0.95556
RegenerationR3	-0.067	5.606	0.80900	0.98458
RegenerationR4	0.106	5.606	0.71221	0.95820
RegenerationR5	0.083	5.606	0.74012	0.96849
RegenerationR6	0.198	5.606	0.46090	0.77850
RegenerationBL	0.5	5.606	0.12702	0.42376
RegenerationTP	0.128	5.606	0.72875	1.00000

Genes with expression patterns similar to MligTC455_43652

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_43652	2107	43.9	Mlig455_029978	Neo: - Age: -	TMOD3	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_029978 {REF} {Length: 2972} {TRANSSPLICED} {Pfam: Tropomodulin [PF03250.16, score=185.9]} {Human: ENSG00000138594, TMOD3, tropomodulin 3, [RH, Score=224, Expect=4e-70]; ENSG00000128872, TMOD2, tropomodulin 2, [RH, Score=214, Expect=2e-66]} {Mouse: ENSMUSG00000058587, Tmod3, tropomodulin 3, [RH, Score=221, Expect=4e-69]; ENSMUSG00000032186, Tmod2, tropomodulin 2, [RH, Score=213, Expect=4e-66]; ENSMUSG00000028328, Tmod1, tropomodulin 1, [RH, Score=213, Expect=4e-66]} {Dmel: FBgn0082582, tmod, tropomodulin, [RH, Score=273, Expect=1e-87]} {Celegans: WBGene00006823, unc-94, Tropomodulin, [RH, Score=247, Expect=6e-79]} {Smed: dd_Smed_v6_3279_0_1, dd_Smed_v6_3279_0_1, [RH, Score=322, Expect=8e-109]} {RNA1509_1524, RNA1509_29918, RNA1509_52135, RNA1509_7985} {RNA1310_10808.2, RNA1509_29918, RNA1509_52135, RNA1509_7985} {RNA1509_29918, RNA1509_52135, RNA1509_7985, RNA815_3504.1}
2.	MligTC455_43651	2083	43.4	Mlig455_005311	Neo: Int S/G2/M Age: Down-Up-Up, logFC(26M/2M)=0.329	TMOD3	5.983	0.999	0.999	0.999	0.993	0.994	0.999	Mlig455_005311 {REF} {Length: 2334} {TRANSSPLICED} {Pfam: Tropomodulin [PF03250.16, score=185.9]} {Human: ENSG00000138594, TMOD3, tropomodulin 3, [RH, Score=224, Expect=4e-70]; ENSG00000128872, TMOD2, tropomodulin 2, [RH, Score=214, Expect=2e-66]} {Mouse: ENSMUSG00000058587, Tmod3, tropomodulin 3, [RH, Score=221, Expect=4e-69]; ENSMUSG00000032186, Tmod2, tropomodulin 2, [RH, Score=213, Expect=4e-66]; ENSMUSG00000028328, Tmod1, tropomodulin 1, [RH, Score=213, Expect=4e-66]} {Dmel: FBgn0082582, tmod, tropomodulin, [RH, Score=273, Expect=1e-87]} {Celegans: WBGene00006823, unc-94, Tropomodulin, [RH, Score=247, Expect=6e-79]} {Smed: dd_Smed_v6_3279_0_1, dd_Smed_v6_3279_0_1, [RH, Score=322, Expect=8e-109]} {RNA1509_1524, RNA1509_28172, RNA1509_37888, RNA1509_48993, RNA1509_52065} {RNA1310_10808.2, RNA1509_1524, RNA1509_28172, RNA1509_37888, RNA1509_48993, RNA1509_52065} {RNA1509_1524, RNA1509_28172, RNA1509_37888, RNA1509_48993, RNA1509_52065, RNA815_3504.1}
3.	MligTC455_31565	1493	31.1	Mlig455_021821	Neo: Neoblast, stringent Age: -	LNX2	1.709	-	-	0.758	0.951	-	-	Mlig455_021821 {REF} {Length: 2215} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=38.1]; RING-type zinc-finger [PF13445.8, score=34.0]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=32.9]; Ring finger domain [PF13639.8, score=30.6]; zinc finger of C3HC4-type, RING [PF15227.8, score=28.0]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=25.7]; U-box domain [PF04564.17, score=23.0]; zinc-RING finger domain [PF14634.8, score=22.1]; RING-H2 zinc finger domain [PF12678.9, score=19.7]} {Human: ENSG00000139517, LNX2, ligand of numb-protein X 2, [Score=63.9, Expect=1e-10]} {Mouse: ENSMUSG00000008482, Rnf151, ring finger protein 151, [RH, Score=75.5, Expect=2e-15]} {Dmel: FBgn0265464, Traf6, TNF-receptor-associated factor 6, [Score=56.6, Expect=1e-08]} {Smed: dd_Smed_v6_6297_0_2, dd_Smed_v6_6297_0_2, [RH, Score=119, Expect=4e-32]} {RNA1509_33996, RNA1509_7107} {RNA1310_11993, RNA1509_33996, RNA1509_7107} {RNA1509_33996, RNA1509_7107, RNA815_4996.1}
4.	MligTC455_39285	503	10.48	Mlig455_026954	Neo: Int S/G2/M Age: Down-Up-Up Region-enriched R5: 2.273/0.00002		1.703	-	-	0.753	0.950	-	-	Mlig455_026954 {REF} {Length: 2234} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25432} {RNA1310_22232} {RNA815_10193}
5.	MligTC455_52611	2214	46.12	Mlig455_069407	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.448 Region-enriched R5: 1.005/0.00000	PA2G4	0.982	-	-	-	0.982	-	-	Mlig455_069407 {REF} {Length: 3169} {Pfam: Metallopeptidase family M24 [PF00557.26, score=72.2]} {Human: ENSG00000170515, PA2G4, proliferation-associated 2G4, [RH, Score=416, Expect=3e-144]} {Mouse: ENSMUSG00000025364, Pa2g4, proliferation-associated 2G4, [RH, Score=420, Expect=7e-146]} {Dmel: FBgn0035630, CG10576, [RH, Score=385, Expect=3e-132]} {Celegans: WBGene00021088, W08E12.7, [RH, Score=345, Expect=4e-117]} {Smed: dd_Smed_v6_2102_0_1, dd_Smed_v6_2102_0_1, [RH, Score=355, Expect=4e-121]} {RNA1509_21937} {RNA1310_16489.1, RNA1509_21937} {RNA1509_21937, RNA815_7518}
6.	MligTC455_52610	2169	45.19	Mlig455_008639	Neo: - Age: Up-Down-Up, logFC(26M/2M)=1.168 Region-enriched R5: 1.020/0.00000	PA2G4	0.972	-	-	-	0.972	-	-	Mlig455_008639 {REF} {Length: 3279} {Pfam: Metallopeptidase family M24 [PF00557.26, score=72.2]} {Human: ENSG00000170515, PA2G4, proliferation-associated 2G4, [RH, Score=416, Expect=3e-144]} {Mouse: ENSMUSG00000025364, Pa2g4, proliferation-associated 2G4, [RH, Score=420, Expect=7e-146]} {Dmel: FBgn0035630, CG10576, [RH, Score=385, Expect=3e-132]} {Celegans: WBGene00021088, W08E12.7, [RH, Score=345, Expect=4e-117]} {Smed: dd_Smed_v6_2102_0_1, dd_Smed_v6_2102_0_1, [RH, Score=355, Expect=4e-121]} {RNA1509_21937} {RNA1310_16489.1} {RNA815_7518}
7.	MligTC455_28167	889	18.53	Mlig455_041562	Neo: Int S/G2/M Age: logFC(26M/2M)=0.271 Region-enriched R5: 1.459/0.00003 Region-enriched R4: 1.099/0.04929	DDX60	0.969	-	-	-	0.969	-	-	Mlig455_041562 {REF} {Length: 6838} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=61.6]; Type III restriction enzyme, res subunit [PF04851.17, score=45.6]; Helicase conserved C-terminal domain [PF00271.33, score=33.2]; Zinc finger, ZZ type [PF00569.19, score=25.6]} {Human: ENSG00000137628, DDX60, DExD/H-box helicase 60, [RH, Score=639, Expect=0.0]} {Mouse: ENSMUSG00000037921, Ddx60, DEAD (Asp-Glu-Ala-Asp) box polypeptide 60, [RH, Score=618, Expect=0.0]} {Dmel: FBgn0039117, tst, twister, [Score=84.7, Expect=5e-16]} {Celegans: WBGene00016194, C28H8.3, Uncharacterized helicase C28H8.3, [RH, Score=403, Expect=6e-116]} {Smed: dd_Smed_v6_10069_0_1, dd_Smed_v6_10069_0_1, [Score=84.7, Expect=3e-16]} {RNA1509_25102, RNA1509_2815} {RNA1310_707, RNA1509_25102, RNA1509_2815} {RNA1509_25102, RNA1509_2815, RNA815_269.1}
8.	MligTC455_46159	1471	30.64	Mlig455_047468	Neo: - Age: Down-Up-Down, logFC(26M/2M)=1.700 Region-enriched R4: 1.770/0.00003	EHD1	0.965	-	-	-	0.965	-	-	Mlig455_047468 {REF} {Length: 3382} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF5600) [PF18150.3, score=143.5]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=62.1]; N-terminal EH-domain containing protein [PF16880.7, score=58.8]; Dynamin family [PF00350.25, score=54.3]; 50S ribosome-binding GTPase [PF01926.25, score=34.5]; Elongation factor Tu GTP binding domain [PF00009.29, score=21.5]; EF hand [PF00036.34, score=20.0]} {Human: ENSG00000110047, EHD1, EH domain containing 1, [RH, Score=709, Expect=0.0]; ENSG00000013016, EHD3, EH domain containing 3, [RH, Score=704, Expect=0.0]; ENSG00000103966, EHD4, EH domain containing 4, [RH, Score=693, Expect=0.0]} {Mouse: ENSMUSG00000024772, Ehd1, EH-domain containing 1, [RH, Score=711, Expect=0.0]; ENSMUSG00000107039, Ehd1, EH-domain containing 1, [RH, Score=711, Expect=0.0]; ENSMUSG00000024065, Ehd3, EH-domain containing 3, [RH, Score=698, Expect=0.0]; ENSMUSG00000027293, Ehd4, EH-domain containing 4, [RH, Score=690, Expect=0.0]} {Dmel: FBgn0016693, Past1, Putative Achaete Scute Target 1, [RH, Score=736, Expect=0.0]} {Celegans: WBGene00004373, rme-1, Receptor Mediated Endocytosis; Receptor-mediated endocytosis 1 isoform I, [RH, Score=729, Expect=0.0]} {Smed: dd_Smed_v6_3148_0_1, dd_Smed_v6_3148_0_1, [RH, Score=741, Expect=0.0]} {RNA1509_2034} {RNA1310_6511.3} {RNA815_5849.2}
9.	MligTC455_48111	1192	24.84	Mlig455_003138	Neo: Int S/G2/M Age: -	CNOT7	0.957	-	-	0.957	-	-	-	Mlig455_003138 {REF} {Length: 3134} {TRANSSPLICED} {Pfam: CAF1 family ribonuclease [PF04857.22, score=70.6]} {Human: ENSG00000198791, CNOT7, CCR4-NOT transcription complex subunit 7, [RH, Score=270, Expect=1e-89]; ENSG00000155508, CNOT8, CCR4-NOT transcription complex subunit 8, [RH, Score=266, Expect=6e-88]} {Mouse: ENSMUSG00000031601, Cnot7, CCR4-NOT transcription complex, subunit 7, [RH, Score=270, Expect=9e-90]; ENSMUSG00000020515, Cnot8, CCR4-NOT transcription complex, subunit 8, [RH, Score=266, Expect=4e-88]} {Dmel: FBgn0036239, Pop2, [RH, Score=277, Expect=2e-92]} {Celegans: WBGene00000369, ccf-1, CCR4-NOT transcription complex subunit 7, [RH, Score=189, Expect=4e-58]} {Smed: dd_Smed_v6_10225_0_1, dd_Smed_v6_10225_0_1, [RH, Score=266, Expect=2e-86]} {RNA1509_11515, RNA1509_15417, RNA1509_20534, RNA1509_35734, RNA1509_38866, RNA1509_53668} {RNA1310_20569.1, RNA1509_11515, RNA1509_15417, RNA1509_20534, RNA1509_35734, RNA1509_38866, RNA1509_53668} {RNA1509_11515, RNA1509_15417, RNA1509_20534, RNA1509_35734, RNA1509_38866, RNA1509_53668, RNA815_9569}
10.	MligTC455_43843	1915	39.89	Mlig455_054774	Neo: Int S/G2/M Age: Up-Down-Up	PSMD14	0.951	-	-	-	0.951	-	-	Mlig455_054774 {REF} {Length: 1685} {TRANSSPLICED} {Pfam: JAB1/Mov34/MPN/PAD-1 ubiquitin protease [PF01398.23, score=112.1]; Maintenance of mitochondrial structure and function [PF13012.8, score=54.5]; Prokaryotic homologs of the JAB domain [PF14464.8, score=25.7]} {Human: ENSG00000115233, PSMD14, proteasome 26S subunit, non-ATPase 14, [RH, Score=513, Expect=0.0]} {Mouse: ENSMUSG00000026914, Psmd14, proteasome (prosome, macropain) 26S subunit, non-ATPase, 14, [RH, Score=513, Expect=0.0]} {Dmel: FBgn0028694, Rpn11, Regulatory particle non-ATPase 11, [RH, Score=529, Expect=0.0]} {Celegans: WBGene00004467, rpn-11, 26S proteasome non-ATPase regulatory subunit 14, [RH, Score=454, Expect=6e-162]} {Smed: dd_Smed_v6_2126_0_1, dd_Smed_v6_2126_0_1, [RH, Score=520, Expect=0.0]} {RNA1509_2523} {RNA1310_22197.1} {RNA815_10026}
11.	MligTC455_28520	2013	41.93	Mlig455_052699	Neo: Neoblast Age: Down-Down-Up Region-enriched R4: 1.382/0.00004	SEM1	0.95	-	-	-	0.950	-	-	Mlig455_052699 {REF} {Length: 1402} {Pfam: DSS1/SEM1 family [PF05160.15, score=78.0]} {Human: ENSG00000127922, SEM1, SEM1, 26S proteasome complex subunit, [RH, Score=60.1, Expect=2e-12]} {Mouse: ENSMUSG00000042541, Sem1, SEM1, 26S proteasome complex subunit, [RH, Score=60.1, Expect=1e-12]} {Dmel: FBgn0266666, Sem1, Suppressor of exocyst mutations 1, [RH, Score=50.1, Expect=9e-09]} {Celegans: WBGene00022492, dss-1, Probable 26S proteasome complex subunit dss-1, [Score=48.9, Expect=2e-08]} {Smed: dd_Smed_v6_1550_0_1, dd_Smed_v6_1550_0_1, [RH, Score=72.4, Expect=1e-17]} {RNA1509_14991, RNA1509_48638} {RNA1310_33997.1, RNA1509_14991} {RNA1509_14991, RNA815_15780.3}
12.	MligTC455_36871	4132	86.08	Mlig455_061085	Neo: Irradiation Age: logFC(26M/2M)=0.831 Region-enriched R4: 1.146/0.00083 Region-enriched R5: 1.080/0.00009 Regeneration-upregulated BL: 1.165 Regeneration-enriched BL: 1.165	H2AFV	0.95	-	-	-	0.950	-	-	Mlig455_061085 {REF} {Length: 929} {TRANSSPLICED} {Pfam: Core histone H2A/H2B/H3/H4 [PF00125.26, score=69.1]; C-terminus of histone H2A [PF16211.7, score=49.4]} {Human: ENSG00000105968, H2AFV, H2A histone family member V, [RH, Score=224, Expect=8e-77]; ENSG00000164032, H2AFZ, H2A histone family member Z, [RH, Score=223, Expect=2e-76]} {Mouse: ENSMUSG00000041126, H2afv, H2A histone family, member V, [RH, Score=224, Expect=5e-77]; ENSMUSG00000037894, H2afz, H2A histone family, member Z, [RH, Score=223, Expect=2e-76]} {Dmel: FBgn0001197, His2Av, Histone H2A variant, [RH, Score=223, Expect=3e-76]} {Celegans: WBGene00019947, htz-1, Histone H2A.V, [RH, Score=222, Expect=5e-76]} {Smed: dd_Smed_v6_2614_0_1, dd_Smed_v6_2614_0_1, [RH, Score=196, Expect=5e-66]} {RNA1509_18636} {RNA1310_60280} {RNA815_1839.1}

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