M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_43951

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_43951 218 4.55 Mlig455_007315

Neo: -

Age: -

 NEMP2 Mlig455_007315 {REF} {Length: 2661} {TRANSSPLICED} {Pfam: NEMP family [PF10225.11, score=163.5]} {Human: ENSG00000189362, NEMP2, nuclear envelope integral membrane protein 2, [RH, Score=103, Expect=2e-23]; ENSG00000166881, NEMP1, nuclear envelope integral membrane protein 1, [RH, Score=102, Expect=9e-23]} {Mouse: ENSMUSG00000043015, Nemp2, nuclear envelope integral membrane protein 2, [RH, Score=77.0, Expect=1e-14]} {RNA1509_26871, RNA1509_42654} {RNA1310_10680, RNA1509_26871, RNA1509_42654} {RNA1509_26871, RNA1509_42654, RNA815_39512}

Cumulative graph for MligTC455_43951

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.789 2.935 0.32997 0.97641
RegionR2 0.784 2.935 0.46749 0.85329
RegionR3 0.003 2.935 0.85236 1.00000
RegionR4 1.351 2.935 0.17877 0.44772
RegionR5 1.192 2.935 0.11344 0.33267
RegionR6 0.303 2.935 0.71988 1.00000
RegionR7 0.449 2.935 0.66922 1.00000
RegionR8 0.709 2.935 0.56529 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.374 2.935 0.99987 1.00000
RegenerationR2 -0.921 2.935 0.13570 0.56274
RegenerationR3 1.066 2.935 0.11199 0.52530
RegenerationR4 0.098 2.935 0.89430 1.00000
RegenerationR5 0.695 2.935 0.19954 0.63199
RegenerationR6 1.959 2.935 0.00149 0.04312
RegenerationBL -1.42 2.935 0.27851 0.63921
RegenerationTP -0.32 2.935 0.74077 1.00000


Genes with expression patterns similar to MligTC455_43951

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_43951 218 4.55 Mlig455_007315

Neo: -

Age: -

 NEMP2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_007315 {REF} {Length: 2661} {TRANSSPLICED} {Pfam: NEMP family [PF10225.11, score=163.5]} {Human: ENSG00000189362, NEMP2, nuclear envelope integral membrane protein 2, [RH, Score=103, Expect=2e-23]; ENSG00000166881, NEMP1, nuclear envelope integral membrane protein 1, [RH, Score=102, Expect=9e-23]} {Mouse: ENSMUSG00000043015, Nemp2, nuclear envelope integral membrane protein 2, [RH, Score=77.0, Expect=1e-14]} {RNA1509_26871, RNA1509_42654} {RNA1310_10680, RNA1509_26871, RNA1509_42654} {RNA1509_26871, RNA1509_42654, RNA815_39512}
2. MligTC455_00419 109 2.27 Mlig455_003934

Neo: -

Age: -

 0.983 - - - 0.983 - - Mlig455_003934 {REF} {Length: 780} {NoTransDecoderORF} {RNA1509_46406} {RNA1310_72097} {RNA815_61152.1}
3. MligTC455_47794 767 15.99 Mlig455_061481

Neo: -

Age: -

 COPS8 0.979 - - - - - 0.979 Mlig455_061481 {REF} {Length: 1276} {TRANSSPLICED} {Pfam: CSN8/PSMD8/EIF3K family [PF10075.11, score=46.0]} {Human: ENSG00000198612, COPS8, COP9 signalosome subunit 8, [Score=67.4, Expect=2e-13]} {Mouse: ENSMUSG00000034432, Cops8, COP9 signalosome subunit 8, [Score=65.9, Expect=4e-13]} {RNA1509_27754, RNA1509_54334} {RNA1310_39752, RNA1509_27754} {RNA1509_27754, RNA815_30337}
4. MligTC455_46020 110 2.29 Mlig455_055591

Neo: Int S/G2/M

Age: -

Region-enriched R2: 3.851/0.03747

 RRP8 0.97 - - 0.970 - - - Mlig455_055591 {REF} {Length: 1084} {TRANSSPLICED} {Pfam: Hypothetical methyltransferase [PF05148.17, score=214.3]; Methyltransferase domain [PF08241.14, score=19.7]} {Human: ENSG00000132275, RRP8, ribosomal RNA processing 8, [RH, Score=177, Expect=3e-51]} {Mouse: ENSMUSG00000030888, Rrp8, ribosomal RNA processing 8, methyltransferase, homolog (yeast), [RH, Score=181, Expect=4e-53]} {Dmel: FBgn0034422, CG7137, [RH, Score=152, Expect=6e-43]} {Celegans: WBGene00020296, T07A9.8, Ribosomal RNA-processing protein 8, [RH, Score=175, Expect=3e-52]} {Smed: dd_Smed_v6_11164_0_1, dd_Smed_v6_11164_0_1, [RH, Score=163, Expect=2e-48]} {RNA1509_19284, RNA1509_28448} {RNA1310_32382, RNA1509_19284, RNA1509_28448} {RNA1509_19284, RNA1509_28448, RNA815_14841}
5. MligTC455_25684 191 3.99 Mlig455_005063

Neo: -

Age: Down-Down-Up

 MED21 0.963 - - 0.963 - - - Mlig455_005063 {REF} {Length: 919} {TRANSSPLICED} {Pfam: Subunit 21 of Mediator complex [PF11221.10, score=76.3]} {Human: ENSG00000152944, MED21, mediator complex subunit 21, [RH, Score=90.9, Expect=2e-23]} {Mouse: ENSMUSG00000030291, Med21, mediator complex subunit 21, [RH, Score=91.3, Expect=6e-24]} {Dmel: FBgn0040020, MED21, Mediator complex subunit 21, [RH, Score=85.9, Expect=5e-22]} {Celegans: WBGene00007704, mdt-21, Mediator of RNA polymerase II transcription subunit 21, [RH, Score=49.7, Expect=3e-08]} {RNA1509_27093} {RNA1310_34223} {RNA815_18272}
6. MligTC455_39505 66 1.37 Mlig455_030969

Neo: -

Age: -

Region-enriched R2: 4.896/0.02013

 0.956 - - 0.956 - - - Mlig455_030969 {REF} {Length: 482} {NoTransDecoderORF} {RNA1509_9917} {RNA1310_4320.1} {RNA815_4192.2}
7. MligTC455_34812 109 2.27 Mlig455_019010

Neo: -

Age: -

 INTS11 0.955 - - - 0.955 - - Mlig455_019010 {REF} {Length: 2959} {TRANSSPLICED} {Pfam: Beta-Casp domain [PF10996.10, score=92.5]; Metallo-beta-lactamase superfamily domain [PF16661.7, score=66.7]; Zn-dependent metallo-hydrolase RNA specificity domain [PF07521.14, score=57.6]; Metallo-beta-lactamase superfamily [PF00753.29, score=47.1]; Beta-lactamase superfamily domain [PF12706.9, score=35.6]} {Human: ENSG00000127054, INTS11, integrator complex subunit 11, [RH, Score=752, Expect=0.0]} {Mouse: ENSMUSG00000029034, Ints11, integrator complex subunit 11, [RH, Score=748, Expect=0.0]} {Dmel: FBgn0039691, IntS11, Integrator 11, [RH, Score=713, Expect=0.0]} {Celegans: WBGene00008642, F10B5.8, [RH, Score=662, Expect=0.0]} {Smed: dd_Smed_v6_10577_0_1, dd_Smed_v6_10577_0_1, [RH, Score=715, Expect=0.0]} {RNA1509_11563} {RNA1310_10198, RNA1509_11563} {RNA1509_11563, RNA815_3817}
8. MligTC455_24559 550 11.45 Mlig455_021389

Neo: -

Age: -

 0.954 - - - - - 0.954 Mlig455_021389 {REF} {Length: 1617} {NoTransDecoderORF} {RNA1509_36722} {RNA1310_26276} {RNA815_12141}
9. MligTC455_41552 70 1.45 Mlig455_009750

Neo: -

Age: logFC(26M/2M)=-0.702

 0.954 - - - 0.954 - - Mlig455_009750 {REF} {Length: 2251} {Pfam: PH domain [PF00169.31, score=35.5]; Pleckstrin homology domain [PF15413.8, score=21.5]} {Smed: dd_Smed_v6_8815_0_1, dd_Smed_v6_8815_0_1, [RH, Score=54.7, Expect=4e-08]} {RNA1310_17119.1} {RNA815_17375}
10. MligTC455_40581 643 13.4 Mlig455_048424, Mlig455_048567

Neo: Irradiation

Age: logFC(26M/2M)=0.697

 POGZ 0.951 - - - 0.951 - -

Mlig455_048424 {REF} {Length: 2507} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=29.6]; C2H2-type zinc finger [PF13894.8, score=22.4]; Drought induced 19 protein (Di19), zinc-binding [PF05605.14, score=19.0]} {Human: ENSG00000143442, POGZ, pogo transposable element derived with ZNF domain, [RH, Score=129, Expect=2e-30]} {Mouse: ENSMUSG00000038902, Pogz, pogo transposable element with ZNF domain, [RH, Score=131, Expect=3e-31]} {Smed: dd_Smed_v6_2118_0_1, dd_Smed_v6_2118_0_1, [Score=212, Expect=5e-59]} {RNA1509_5429} {RNA1310_8161} {RNA815_4388}

Mlig455_048567 {REF} {Length: 2583} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=29.3]; C2H2-type zinc finger [PF13894.8, score=22.1]; Drought induced 19 protein (Di19), zinc-binding [PF05605.14, score=19.2]} {Human: ENSG00000143442, POGZ, pogo transposable element derived with ZNF domain, [RH, Score=129, Expect=3e-30]} {Mouse: ENSMUSG00000038902, Pogz, pogo transposable element with ZNF domain, [RH, Score=131, Expect=3e-31]} {Smed: dd_Smed_v6_2118_0_1, dd_Smed_v6_2118_0_1, [RH, Score=223, Expect=7e-63]} {RNA1509_5429} {RNA1310_8161} {RNA815_4388}
11. MligTC455_47575 203 4.23 Mlig455_068827

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-1.457

 MAN1C1 0.95 - - 0.950 - - - Mlig455_068827 {REF} {Length: 3468} {Pfam: Glycosyl hydrolase family 47 [PF01532.22, score=378.5]} {Human: ENSG00000117643, MAN1C1, mannosidase alpha class 1C member 1, [Score=268, Expect=7e-82]; ENSG00000198162, MAN1A2, mannosidase alpha class 1A member 2, [Score=268, Expect=2e-81]} {Mouse: ENSMUSG00000037306, Man1c1, mannosidase, alpha, class 1C, member 1, [Score=267, Expect=2e-81]; ENSMUSG00000008763, Man1a2, mannosidase, alpha, class 1A, member 2, [Score=267, Expect=2e-81]; ENSMUSG00000003746, Man1a, mannosidase 1, alpha, [Score=264, Expect=6e-80]} {Dmel: FBgn0259170, alpha-Man-Ia, alpha-Mannosidase class I a, [Score=268, Expect=1e-81]} {Celegans: WBGene00008258, mans-2, Mannosyl-oligosaccharide 1,2-alpha-mannosidase C52E4.5, [Score=250, Expect=1e-75]} {Smed: dd_Smed_v6_6801_0_1, dd_Smed_v6_6801_0_1, [Score=267, Expect=3e-82]} {RNA1509_48511, RNA1509_9530} {RNA1310_9474.1, RNA1509_48511, RNA1509_9530} {RNA1509_48511, RNA1509_9530, RNA815_6962}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA