M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_43956

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_43956 275 5.74 Mlig455_037223

Neo: Irradiation

Age: logFC(26M/2M)=0.464

 OXA1L Mlig455_037223 {REF} {Length: 1420} {Pfam: 60Kd inner membrane protein [PF02096.22, score=44.1]} {Human: ENSG00000155463, OXA1L, OXA1L, mitochondrial inner membrane protein, [Score=96.3, Expect=2e-22]} {Mouse: ENSMUSG00000000959, Oxa1l, oxidase assembly 1-like, [Score=101, Expect=2e-24]} {Dmel: FBgn0027615, CG6404, [Score=91.3, Expect=9e-21]} {Celegans: WBGene00007215, oxa-1, OXA mitochondrial inner membrane insertase homolog, [Score=77.4, Expect=3e-16]} {Smed: dd_Smed_v6_6233_1_2, dd_Smed_v6_6233_1_2, [Score=74.3, Expect=3e-15]} {RNA1509_10268} {RNA1310_18722.1} {RNA815_10959}

Cumulative graph for MligTC455_43956

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.284 3.112 1.00000 1.00000
RegionR2 0.345 3.112 0.80686 1.00000
RegionR3 0.72 3.112 0.65581 1.00000
RegionR4 1.59 3.112 0.46458 0.79247
RegionR5 1.605 3.112 0.39591 0.75247
RegionR6 0.755 3.112 0.67548 1.00000
RegionR7 0.966 3.112 0.59148 1.00000
RegionR8 -3.697 3.112 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.703 3.112 1.00000 1.00000
RegenerationR2 0.586 3.112 0.78583 0.98526
RegenerationR3 0.228 3.112 0.98938 1.00000
RegenerationR4 0.576 3.112 0.87928 1.00000
RegenerationR5 0.689 3.112 0.81895 0.99404
RegenerationR6 2.716 3.112 0.28333 0.63317
RegenerationBL 0.919 3.112 0.67031 1.00000
RegenerationTP 4.226 3.112 0.18151 0.61708


Genes with expression patterns similar to MligTC455_43956

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_43956 275 5.74 Mlig455_037223

Neo: Irradiation

Age: logFC(26M/2M)=0.464

 OXA1L 4 1.000 - 1.000 - 1.000 1.000 Mlig455_037223 {REF} {Length: 1420} {Pfam: 60Kd inner membrane protein [PF02096.22, score=44.1]} {Human: ENSG00000155463, OXA1L, OXA1L, mitochondrial inner membrane protein, [Score=96.3, Expect=2e-22]} {Mouse: ENSMUSG00000000959, Oxa1l, oxidase assembly 1-like, [Score=101, Expect=2e-24]} {Dmel: FBgn0027615, CG6404, [Score=91.3, Expect=9e-21]} {Celegans: WBGene00007215, oxa-1, OXA mitochondrial inner membrane insertase homolog, [Score=77.4, Expect=3e-16]} {Smed: dd_Smed_v6_6233_1_2, dd_Smed_v6_6233_1_2, [Score=74.3, Expect=3e-15]} {RNA1509_10268} {RNA1310_18722.1} {RNA815_10959}
2. MligTC455_47021 609 12.68 Mlig455_042879

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.571

Region-enriched R5: 1.845/0.00023

 NUP35 1.875 - - - - 0.956 0.919 Mlig455_042879 {REF} {Length: 3231} {Pfam: Nup53/35/40-type RNA recognition motif [PF05172.15, score=62.0]; Nup53/35/40-type RNA recognition motif [PF14605.8, score=39.2]} {Human: ENSG00000163002, NUP35, nucleoporin 35, [RH, Score=110, Expect=8e-27]} {Mouse: ENSMUSG00000026999, Nup35, nucleoporin 35, [RH, Score=115, Expect=1e-28]; ENSMUSG00000091900, Gm4353, predicted gene 4353, [RH, Score=115, Expect=1e-28]} {Dmel: FBgn0030943, CG6540, [RH, Score=76.3, Expect=5e-15]} {Celegans: WBGene00003805, npp-19, Nucleoporin NUP53, [RH, Score=62.4, Expect=2e-10]} {Smed: dd_Smed_v6_10329_0_1, dd_Smed_v6_10329_0_1, [RH, Score=75.9, Expect=4e-15]} {RNA1509_29514} {RNA1310_9308.1} {RNA815_19261}
3. MligTC455_21852 452 9.41 Mlig455_070888

Neo: -

Age: Down-Up-Down

 ALAD 1.707 - - 0.741 - - 0.966 Mlig455_070888 {REF} {Length: 1219} {TRANSSPLICED} {Pfam: Delta-aminolevulinic acid dehydratase [PF00490.23, score=389.9]} {Human: ENSG00000148218, ALAD, aminolevulinate dehydratase, [RH, Score=377, Expect=8e-131]} {Mouse: ENSMUSG00000028393, Alad, aminolevulinate, delta-, dehydratase, [RH, Score=369, Expect=7e-128]} {Dmel: FBgn0036271, Pbgs, Porphobilinogen synthase, [RH, Score=329, Expect=2e-112]} {Smed: dd_Smed_v6_6364_0_1, dd_Smed_v6_6364_0_1, [RH, Score=365, Expect=1e-126]} {RNA1509_20362, RNA1509_45703} {RNA1310_26908, RNA1509_20362, RNA1509_45703} {RNA1509_20362, RNA1509_45703, RNA815_12467}
4. MligTC455_36926 232 4.83 Mlig455_050619

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=0.706

 1.682 0.704 - - - - 0.978 Mlig455_050619 {REF} {Length: 655} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_49677} {RNA815_29761}
5. MligTC455_36925 236 4.92 Mlig455_049273

Neo: Int S/G2/M

Age: Down-Up-Up

 RFX7 1.679 0.703 - - - - 0.976 Mlig455_049273 {REF} {Length: 3627} {TRANSSPLICED} {Pfam: RFX DNA-binding domain [PF02257.17, score=94.5]; RFX5 N-terminal domain [PF18326.3, score=27.5]; Poxvirus D5 protein-like [PF03288.18, score=19.2]} {Human: ENSG00000181827, RFX7, regulatory factor X7, [RH, Score=139, Expect=4e-34]; ENSG00000143390, RFX5, regulatory factor X5, [RH, Score=139, Expect=1e-34]} {Mouse: ENSMUSG00000037674, Rfx7, regulatory factor X, 7, [RH, Score=166, Expect=3e-43]} {Dmel: FBgn0037445, CG9727, [RH, Score=155, Expect=1e-39]} {Celegans: WBGene00000914, daf-19, RFX-like transcription factor daf-19, [Score=65.5, Expect=6e-11]} {Smed: dd_Smed_v6_15486_0_1, dd_Smed_v6_15486_0_1, [Score=142, Expect=7e-37]} {RNA1509_24096} {RNA1310_12960, RNA1509_24096} {RNA1509_24096, RNA815_14577}
6. MligTC455_46565 601 12.51 Mlig455_059227

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.582

Region-enriched R5: 1.261/0.00175

 GTPBP6 1.654 - - 0.704 - - 0.950 Mlig455_059227 {REF} {Length: 1547} {TRANSSPLICED} {Pfam: 50S ribosome-binding GTPase [PF01926.25, score=45.0]; GTP-binding GTPase N-terminal [PF13167.8, score=37.5]} {Human: ENSG00000178605, GTPBP6, GTP binding protein 6 (putative), [RH, Score=201, Expect=2e-58]} {Mouse: ENSMUSG00000033434, Gtpbp6, GTP binding protein 6 (putative), [RH, Score=176, Expect=3e-49]} {Dmel: FBgn0039339, CG5116, [RH, Score=194, Expect=3e-56]} {Celegans: WBGene00009769, F46B6.4, [RH, Score=202, Expect=1e-59]} {Smed: dd_Smed_v6_13896_0_1, dd_Smed_v6_13896_0_1, [RH, Score=236, Expect=3e-72]} {RNA1509_50612} {RNA1310_21595, RNA1509_50612} {RNA1509_50612, RNA815_16007}
7. MligTC455_51940 294 6.12 Mlig455_021853, Mlig455_022022

Neo: -

Age: -

 TOX4 0.969 0.969 - - - - -

Mlig455_021853 {REF} {Length: 2206} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=31.2]; HMG-box domain [PF09011.12, score=30.7]; Coiled-coil domain-containing protein 124 /Oxs1 [PF06244.14, score=20.8]} {Human: ENSG00000092203, TOX4, TOX high mobility group box family member 4, [Score=53.1, Expect=7e-07]; ENSG00000124191, TOX2, TOX high mobility group box family member 2, [Score=52.8, Expect=9e-07]; ENSG00000103460, TOX3, TOX high mobility group box family member 3, [Score=52.4, Expect=1e-06]} {Mouse: ENSMUSG00000043668, Tox3, TOX high mobility group box family member 3, [RH, Score=52.4, Expect=9e-07]} {Dmel: FBgn0035238, CG12104, [Score=68.6, Expect=1e-12]} {Smed: dd_Smed_v6_22626_0_1, dd_Smed_v6_22626_0_1, [Score=46.2, Expect=5e-06]} {RNA1509_13216} {RNA1310_11409.1} {RNA815_3695.1}

Mlig455_022022 {REF} {Length: 2326} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=31.2]; HMG-box domain [PF09011.12, score=30.7]; Coiled-coil domain-containing protein 124 /Oxs1 [PF06244.14, score=20.8]} {Human: ENSG00000092203, TOX4, TOX high mobility group box family member 4, [Score=53.1, Expect=7e-07]; ENSG00000124191, TOX2, TOX high mobility group box family member 2, [Score=52.8, Expect=9e-07]; ENSG00000103460, TOX3, TOX high mobility group box family member 3, [Score=52.4, Expect=1e-06]} {Mouse: ENSMUSG00000043668, Tox3, TOX high mobility group box family member 3, [RH, Score=52.4, Expect=9e-07]} {Dmel: FBgn0035238, CG12104, [Score=68.6, Expect=1e-12]} {Smed: dd_Smed_v6_22626_0_1, dd_Smed_v6_22626_0_1, [Score=46.2, Expect=5e-06]} {RNA1509_13216} {RNA1310_11409.1, RNA1509_13216} {RNA1509_13216, RNA815_3695.1}
8. MligTC455_26867 5676 118.25 Mlig455_040575

Neo: -

Age: Down-Down-Up

 0.95 - - - - 0.950 - Mlig455_040575 {REF} {Length: 3337} {TRANSSPLICED} {RNA1509_18957} {RNA1310_20612.1} {RNA815_26913}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA