M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_44988

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_44988 6581 137.10 Mlig455_047291

Neo: -

Age: logFC(26M/2M)=0.221

 GYG2 Mlig455_047291 {REF} {Length: 3360} {TRANSSPLICED} {Pfam: Glycosyl transferase family 8 [PF01501.22, score=42.4]} {Human: ENSG00000056998, GYG2, glycogenin 2, [Score=151, Expect=4e-40]} {Mouse: ENSMUSG00000019528, Gyg, glycogenin, [Score=140, Expect=4e-37]} {Dmel: FBgn0265191, Glycogenin, [Score=105, Expect=7e-25]} {Celegans: WBGene00006863, gyg-1, Glycogenin-1, [Score=104, Expect=8e-25]} {Smed: dd_Smed_v6_647_1_1, dd_Smed_v6_647_1_1, [Score=119, Expect=8e-30]} {RNA1509_511} {RNA1310_14272.1} {RNA815_13036.1}

Cumulative graph for MligTC455_44988

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.004 7.197 0.99282 1.00000
RegionR2 -0.577 7.197 0.11600 0.42147
RegionR3 0.778 7.197 0.00724 0.12279
RegionR4 0.998 7.197 0.00325 0.02598
RegionR5 0.358 7.197 0.22091 0.52301
RegionR6 0.349 7.197 0.24679 0.83236
RegionR7 -0.986 7.197 0.00508 0.11138
RegionR8 -0.924 7.197 0.02100 0.28261

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.032 7.197 0.96123 1.00000
RegenerationR2 0.078 7.197 0.83761 1.00000
RegenerationR3 -0.144 7.197 0.71188 0.95199
RegenerationR4 0.149 7.197 0.70847 0.95677
RegenerationR5 0.561 7.197 0.14701 0.56374
RegenerationR6 0.406 7.197 0.29287 0.64355
RegenerationBL 0.865 7.197 0.01201 0.11192
RegenerationTP 0.846 7.197 0.03111 0.29637


Genes with expression patterns similar to MligTC455_44988

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_44988 6581 137.1 Mlig455_047291

Neo: -

Age: logFC(26M/2M)=0.221

 GYG2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_047291 {REF} {Length: 3360} {TRANSSPLICED} {Pfam: Glycosyl transferase family 8 [PF01501.22, score=42.4]} {Human: ENSG00000056998, GYG2, glycogenin 2, [Score=151, Expect=4e-40]} {Mouse: ENSMUSG00000019528, Gyg, glycogenin, [Score=140, Expect=4e-37]} {Dmel: FBgn0265191, Glycogenin, [Score=105, Expect=7e-25]} {Celegans: WBGene00006863, gyg-1, Glycogenin-1, [Score=104, Expect=8e-25]} {Smed: dd_Smed_v6_647_1_1, dd_Smed_v6_647_1_1, [Score=119, Expect=8e-30]} {RNA1509_511} {RNA1310_14272.1} {RNA815_13036.1}
2. MligTC455_44989 6960 145 Mlig455_069324

Neo: -

Age: logFC(26M/2M)=0.260

Region-enriched R4: 1.074/0.01168

 GYG1 5.92 0.997 0.995 0.978 0.972 0.991 0.987 Mlig455_069324 {REF} {Length: 3749} {TRANSSPLICED} {Pfam: Glycosyl transferase family 8 [PF01501.22, score=86.9]; Nucleotide-diphospho-sugar transferase [PF03407.18, score=19.4]} {Human: ENSG00000163754, GYG1, glycogenin 1, [RH, Score=306, Expect=7e-99]} {Mouse: ENSMUSG00000019528, Gyg, glycogenin, [RH, Score=311, Expect=2e-100]} {Dmel: FBgn0265191, Glycogenin, [RH, Score=303, Expect=1e-93]} {Celegans: WBGene00006863, gyg-1, Glycogenin-1, [RH, Score=258, Expect=1e-79]} {Smed: dd_Smed_v6_647_1_1, dd_Smed_v6_647_1_1, [RH, Score=362, Expect=2e-121]} {RNA1509_31124, RNA1509_511} {RNA1310_1979.3, RNA1509_31124} {RNA1509_31124, RNA815_13036.1}
3. MligTC455_18398 2184 45.5 Mlig455_005862

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.618

Region-enriched R5: 1.237/0.00000

 C1orf123 1.684 - - - 0.972 0.712 - Mlig455_005862 {REF} {Length: 847} {TRANSSPLICED} {Pfam: Eukaryotic protein of unknown function (DUF866) [PF05907.15, score=176.6]} {Human: ENSG00000162384, C1orf123, chromosome 1 open reading frame 123, [RH, Score=178, Expect=1e-57]} {Mouse: ENSMUSG00000028608, 0610037L13Rik, RIKEN cDNA 0610037L13 gene, [RH, Score=179, Expect=3e-58]} {Dmel: FBgn0033810, CG4646, [RH, Score=139, Expect=9e-43]} {Celegans: WBGene00009776, F46B6.12, UPF0587 protein F46B6.12, [RH, Score=150, Expect=6e-47]} {Smed: dd_Smed_v6_8635_0_1, dd_Smed_v6_8635_0_1, [RH, Score=149, Expect=1e-46]} {RNA1509_54892} {RNA1310_36979.2} {RNA815_20279}
4. MligTC455_49069 3685 76.77 Mlig455_070251

Neo: -

Age: logFC(26M/2M)=0.212

Region-enriched R4: 1.746/0.00071

 CS 1.684 - - - 0.971 - 0.713 Mlig455_070251 {REF} {Length: 2221} {TRANSSPLICED} {Pfam: Citrate synthase, C-terminal domain [PF00285.23, score=347.7]} {Human: ENSG00000062485, CS, citrate synthase, [RH, Score=701, Expect=0.0]} {Mouse: ENSMUSG00000005683, Cs, citrate synthase, [RH, Score=699, Expect=0.0]; ENSMUSG00000046934, Csl, citrate synthase like, [RH, Score=687, Expect=0.0]} {Dmel: FBgn0261955, kdn, knockdown, [RH, Score=694, Expect=0.0]} {Celegans: WBGene00000833, cts-1, Probable citrate synthase, mitochondrial, [RH, Score=641, Expect=0.0]} {Smed: dd_Smed_v6_335_0_1, dd_Smed_v6_335_0_1, [RH, Score=706, Expect=0.0]} {RNA1509_762} {RNA1310_11494.1} {RNA815_3764.1}
5. MligTC455_22795 949 19.76 Mlig455_024439

Neo: -

Age: -

 D2HGDH 0.962 - - - 0.962 - - Mlig455_024439 {REF} {Length: 2313} {TRANSSPLICED} {Pfam: FAD linked oxidases, C-terminal domain [PF02913.21, score=184.7]; FAD binding domain [PF01565.25, score=128.8]} {Human: ENSG00000180902, D2HGDH, D-2-hydroxyglutarate dehydrogenase, [RH, Score=559, Expect=0.0]} {Mouse: ENSMUSG00000073609, D2hgdh, D-2-hydroxyglutarate dehydrogenase, [RH, Score=561, Expect=0.0]} {Dmel: FBgn0023507, D2hgdh, D-2-hydroxyglutaric acid dehydrogenase, [RH, Score=503, Expect=1e-174]} {Celegans: WBGene00010055, F54D5.12, [RH, Score=423, Expect=3e-144]} {Smed: dd_Smed_v6_6440_0_1, dd_Smed_v6_6440_0_1, [RH, Score=533, Expect=0.0]} {RNA1509_57878, RNA1509_7824} {RNA1310_15861, RNA1509_57878, RNA1509_7824} {RNA1509_57878, RNA1509_7824, RNA815_6139}
6. MligTC455_34718 17741 369.61 Mlig455_032180, Mlig455_051197

Neo: -

Age: -

Region-enriched R4: 1.171/0.00001

 ATP5MG 0.953 - - - 0.953 - -

Mlig455_032180 {REF} {Length: 743} {TRANSSPLICED} {Pfam: Mitochondrial ATP synthase g subunit [PF04718.17, score=73.0]} {Human: ENSG00000167283, ATP5MG, ATP synthase membrane subunit g, [RH, Score=89.7, Expect=3e-24]} {Mouse: ENSMUSG00000038717, Atp5l, ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G, [RH, Score=87.4, Expect=2e-23]; ENSMUSG00000096486, Gm5426, predicted pseudogene 5426, [RH, Score=85.5, Expect=1e-22]} {Dmel: FBgn0010612, ATPsynG, ATP synthase, [RH, Score=82.0, Expect=1e-21]} {Celegans: WBGene00000209, asg-1, Probable ATP synthase subunit g 1, mitochondrial, [RH, Score=66.6, Expect=2e-15]} {Smed: dd_Smed_v6_428_0_1, dd_Smed_v6_428_0_1, [RH, Score=88.2, Expect=4e-24]} {RNA1509_10193, RNA1509_4151, RNA1509_4154, RNA1509_8268} {RNA1310_44478.1, RNA1509_10193, RNA1509_4151, RNA1509_4154, RNA1509_8268} {RNA1509_10193, RNA1509_4151, RNA1509_4154, RNA1509_8268, RNA815_24565.1}

Mlig455_051197 {REF} {Length: 738} {TRANSSPLICED} {Pfam: Mitochondrial ATP synthase g subunit [PF04718.17, score=73.0]} {Human: ENSG00000167283, ATP5MG, ATP synthase membrane subunit g, [RH, Score=89.7, Expect=3e-24]} {Mouse: ENSMUSG00000038717, Atp5l, ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G, [RH, Score=87.4, Expect=2e-23]; ENSMUSG00000096486, Gm5426, predicted pseudogene 5426, [RH, Score=85.5, Expect=1e-22]} {Dmel: FBgn0010612, ATPsynG, ATP synthase, [RH, Score=82.0, Expect=1e-21]} {Celegans: WBGene00000209, asg-1, Probable ATP synthase subunit g 1, mitochondrial, [RH, Score=66.6, Expect=2e-15]} {Smed: dd_Smed_v6_428_0_1, dd_Smed_v6_428_0_1, [RH, Score=88.2, Expect=4e-24]} {RNA1509_11893, RNA1509_6284} {RNA1310_44478.1, RNA1509_11893, RNA1509_6284} {RNA1509_11893, RNA1509_6284, RNA815_24565.1}
7. MligTC455_45429 764 15.92 Mlig455_000855

Neo: -

Age: -

 CAND1 0.953 - - - 0.953 - - Mlig455_000855 {REF} {Length: 5555} {Pfam: TATA-binding protein interacting (TIP20) [PF08623.12, score=154.4]; Adaptin N terminal region [PF01602.22, score=39.6]; HEAT repeats [PF13646.8, score=33.6]; UME (NUC010) domain [PF08064.15, score=25.1]} {Human: ENSG00000111530, CAND1, cullin associated and neddylation dissociated 1, [RH, Score=895, Expect=0.0]} {Mouse: ENSMUSG00000020114, Cand1, cullin associated and neddylation disassociated 1, [RH, Score=892, Expect=0.0]} {Dmel: FBgn0027568, Cand1, Cullin-associated and neddylation-dissociated 1, [RH, Score=796, Expect=0.0]} {Celegans: WBGene00013606, cand-1, Cullin-associated NEDD8-dissociated protein 1, [RH, Score=466, Expect=1e-141]} {Smed: dd_Smed_v6_6507_0_1, dd_Smed_v6_6507_0_1, [RH, Score=629, Expect=0.0]} {RNA1509_16395, RNA1509_4060} {RNA1310_1644.1, RNA1509_16395} {RNA1509_16395, RNA815_456}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA