M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_44989

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_44989 6960 145.00 Mlig455_069324

Neo: -

Age: logFC(26M/2M)=0.260

Region-enriched R4: 1.074/0.01168

 GYG1 Mlig455_069324 {REF} {Length: 3749} {TRANSSPLICED} {Pfam: Glycosyl transferase family 8 [PF01501.22, score=86.9]; Nucleotide-diphospho-sugar transferase [PF03407.18, score=19.4]} {Human: ENSG00000163754, GYG1, glycogenin 1, [RH, Score=306, Expect=7e-99]} {Mouse: ENSMUSG00000019528, Gyg, glycogenin, [RH, Score=311, Expect=2e-100]} {Dmel: FBgn0265191, Glycogenin, [RH, Score=303, Expect=1e-93]} {Celegans: WBGene00006863, gyg-1, Glycogenin-1, [RH, Score=258, Expect=1e-79]} {Smed: dd_Smed_v6_647_1_1, dd_Smed_v6_647_1_1, [RH, Score=362, Expect=2e-121]} {RNA1509_31124, RNA1509_511} {RNA1310_1979.3, RNA1509_31124} {RNA1509_31124, RNA815_13036.1}

Cumulative graph for MligTC455_44989

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.06 7.268 0.90805 1.00000
RegionR2 -0.601 7.268 0.09343 0.37514
RegionR3 0.751 7.268 0.00793 0.13061
RegionR4 1.074 7.268 0.00116 0.01168
RegionR5 0.428 7.268 0.13203 0.36989
RegionR6 0.381 7.268 0.19354 0.76106
RegionR7 -1.03 7.268 0.00285 0.07438
RegionR8 -0.943 7.268 0.01580 0.24478

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.099 7.268 0.87869 1.00000
RegenerationR2 0.085 7.268 0.81887 0.99479
RegenerationR3 -0.096 7.268 0.80081 0.98293
RegenerationR4 0.169 7.268 0.66308 0.93900
RegenerationR5 0.502 7.268 0.18288 0.61299
RegenerationR6 0.368 7.268 0.32700 0.67321
RegenerationBL 0.852 7.268 0.01104 0.10674
RegenerationTP 0.776 7.268 0.04313 0.34471


Genes with expression patterns similar to MligTC455_44989

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_44989 6960 145 Mlig455_069324

Neo: -

Age: logFC(26M/2M)=0.260

Region-enriched R4: 1.074/0.01168

 GYG1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_069324 {REF} {Length: 3749} {TRANSSPLICED} {Pfam: Glycosyl transferase family 8 [PF01501.22, score=86.9]; Nucleotide-diphospho-sugar transferase [PF03407.18, score=19.4]} {Human: ENSG00000163754, GYG1, glycogenin 1, [RH, Score=306, Expect=7e-99]} {Mouse: ENSMUSG00000019528, Gyg, glycogenin, [RH, Score=311, Expect=2e-100]} {Dmel: FBgn0265191, Glycogenin, [RH, Score=303, Expect=1e-93]} {Celegans: WBGene00006863, gyg-1, Glycogenin-1, [RH, Score=258, Expect=1e-79]} {Smed: dd_Smed_v6_647_1_1, dd_Smed_v6_647_1_1, [RH, Score=362, Expect=2e-121]} {RNA1509_31124, RNA1509_511} {RNA1310_1979.3, RNA1509_31124} {RNA1509_31124, RNA815_13036.1}
2. MligTC455_44988 6581 137.1 Mlig455_047291

Neo: -

Age: logFC(26M/2M)=0.221

 GYG2 5.92 0.997 0.995 0.978 0.972 0.991 0.987 Mlig455_047291 {REF} {Length: 3360} {TRANSSPLICED} {Pfam: Glycosyl transferase family 8 [PF01501.22, score=42.4]} {Human: ENSG00000056998, GYG2, glycogenin 2, [Score=151, Expect=4e-40]} {Mouse: ENSMUSG00000019528, Gyg, glycogenin, [Score=140, Expect=4e-37]} {Dmel: FBgn0265191, Glycogenin, [Score=105, Expect=7e-25]} {Celegans: WBGene00006863, gyg-1, Glycogenin-1, [Score=104, Expect=8e-25]} {Smed: dd_Smed_v6_647_1_1, dd_Smed_v6_647_1_1, [Score=119, Expect=8e-30]} {RNA1509_511} {RNA1310_14272.1} {RNA815_13036.1}
3. MligTC455_34718 17741 369.61 Mlig455_032180, Mlig455_051197

Neo: -

Age: -

Region-enriched R4: 1.171/0.00001

 ATP5MG 0.972 - - - 0.972 - -

Mlig455_032180 {REF} {Length: 743} {TRANSSPLICED} {Pfam: Mitochondrial ATP synthase g subunit [PF04718.17, score=73.0]} {Human: ENSG00000167283, ATP5MG, ATP synthase membrane subunit g, [RH, Score=89.7, Expect=3e-24]} {Mouse: ENSMUSG00000038717, Atp5l, ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G, [RH, Score=87.4, Expect=2e-23]; ENSMUSG00000096486, Gm5426, predicted pseudogene 5426, [RH, Score=85.5, Expect=1e-22]} {Dmel: FBgn0010612, ATPsynG, ATP synthase, [RH, Score=82.0, Expect=1e-21]} {Celegans: WBGene00000209, asg-1, Probable ATP synthase subunit g 1, mitochondrial, [RH, Score=66.6, Expect=2e-15]} {Smed: dd_Smed_v6_428_0_1, dd_Smed_v6_428_0_1, [RH, Score=88.2, Expect=4e-24]} {RNA1509_10193, RNA1509_4151, RNA1509_4154, RNA1509_8268} {RNA1310_44478.1, RNA1509_10193, RNA1509_4151, RNA1509_4154, RNA1509_8268} {RNA1509_10193, RNA1509_4151, RNA1509_4154, RNA1509_8268, RNA815_24565.1}

Mlig455_051197 {REF} {Length: 738} {TRANSSPLICED} {Pfam: Mitochondrial ATP synthase g subunit [PF04718.17, score=73.0]} {Human: ENSG00000167283, ATP5MG, ATP synthase membrane subunit g, [RH, Score=89.7, Expect=3e-24]} {Mouse: ENSMUSG00000038717, Atp5l, ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G, [RH, Score=87.4, Expect=2e-23]; ENSMUSG00000096486, Gm5426, predicted pseudogene 5426, [RH, Score=85.5, Expect=1e-22]} {Dmel: FBgn0010612, ATPsynG, ATP synthase, [RH, Score=82.0, Expect=1e-21]} {Celegans: WBGene00000209, asg-1, Probable ATP synthase subunit g 1, mitochondrial, [RH, Score=66.6, Expect=2e-15]} {Smed: dd_Smed_v6_428_0_1, dd_Smed_v6_428_0_1, [RH, Score=88.2, Expect=4e-24]} {RNA1509_11893, RNA1509_6284} {RNA1310_44478.1, RNA1509_11893, RNA1509_6284} {RNA1509_11893, RNA1509_6284, RNA815_24565.1}
4. MligTC455_12238 249 5.18 Mlig455_015512

Neo: Irradiation

Age: logFC(26M/2M)=-0.488

Regeneration-upregulated R5: 2.536

Regeneration-enriched R5: 2.536

 PDP2 0.956 - - - 0.956 - - Mlig455_015512 {REF} {Length: 2946} {Pfam: Protein phosphatase 2C [PF00481.23, score=58.2]} {Human: ENSG00000172840, PDP2, pyruvate dehyrogenase phosphatase catalytic subunit 2, [Score=99.4, Expect=2e-21]; ENSG00000164951, PDP1, pyruvate dehyrogenase phosphatase catalytic subunit 1, [Score=96.7, Expect=1e-20]} {Mouse: ENSMUSG00000049225, Pdp1, pyruvate dehyrogenase phosphatase catalytic subunit 1, [Score=97.1, Expect=8e-21]} {Dmel: FBgn0029958, Pdp, Pyruvate dehydrogenase phosphatase, [Score=108, Expect=6e-25]} {Celegans: WBGene00022832, pdp-1, Pyruvate Dehydrogenase Phosphatase homolog, [Score=94.0, Expect=2e-20]} {Smed: dd_Smed_v6_4201_0_1, dd_Smed_v6_4201_0_1, [Score=119, Expect=4e-30]} {RNA1509_39535, RNA1509_40467, RNA1509_48674} {RNA1310_14443, RNA1509_39535, RNA1509_40467, RNA1509_48674} {RNA1509_39535, RNA1509_40467, RNA1509_48674, RNA815_18993}
5. MligTC455_29283 58 1.2 Mlig455_030036

Neo: -

Age: logFC(26M/2M)=0.357

 URGCP 0.956 - - - 0.956 - - Mlig455_030036 {REF} {Length: 7780} {TRANSSPLICED} {Pfam: Root hair defective 3 GTP-binding protein (RHD3) [PF05879.14, score=25.8]; Dynamin family [PF00350.25, score=21.3]; 50S ribosome-binding GTPase [PF01926.25, score=19.3]; Guanylate-binding protein, N-terminal domain [PF02263.21, score=19.0]} {Human: ENSG00000106608, URGCP, upregulator of cell proliferation, [Score=123, Expect=2e-27]} {Mouse: ENSMUSG00000078606, Gm4070, predicted gene 4070, [RH, Score=523, Expect=5e-153]; ENSMUSG00000045868, Gvin1, GTPase, very large interferon inducible 1, [RH, Score=521, Expect=2e-152]} {RNA1509_16396, RNA1509_46736, RNA1509_52232} {RNA1310_766.1, RNA1509_46736, RNA1509_52232} {RNA1509_46736, RNA1509_52232, RNA815_2094.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA