M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_45440

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_45440 890 18.54 Mlig455_001967, Mlig455_002069

Neo: -

Age: Down-Up-Down

Region-enriched R2: 3.352/0.00000

Mlig455_001967 {REF} {Length: 1676} {TRANSSPLICED} {Pfam: TIR domain [PF13676.8, score=70.0]} {Smed: dd_Smed_v6_5359_0_1, dd_Smed_v6_5359_0_1, [Score=94.0, Expect=2e-21]} {RNA1509_22810, RNA1509_34457, RNA1509_38886, RNA1509_41787, RNA1509_55399} {RNA1310_19554.1, RNA1509_22810, RNA1509_34457, RNA1509_38886, RNA1509_41787, RNA1509_55399} {RNA1509_22810, RNA1509_34457, RNA1509_38886, RNA1509_41787, RNA1509_55399, RNA815_11769}

Mlig455_002069 {REF} {Length: 1675} {TRANSSPLICED} {Pfam: TIR domain [PF13676.8, score=69.5]} {Smed: dd_Smed_v6_5359_0_2, dd_Smed_v6_5359_0_2, [Score=93.6, Expect=4e-21]} {RNA1509_41787} {RNA1310_19554.1} {RNA815_11769}

Cumulative graph for MligTC455_45440

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -8.231 4.363 0.00408 0.20184
RegionR2 3.352 4.363 0.00000 0.00000
RegionR3 1.738 4.363 0.00475 0.09175
RegionR4 -0.477 4.363 0.95130 1.00000
RegionR5 0.05 4.363 0.82730 1.00000
RegionR6 0.729 4.363 0.38215 0.96131
RegionR7 1.253 4.363 0.10654 0.62019
RegionR8 1.585 4.363 0.04911 0.43464

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 9.448 4.363 0.00092 0.16498
RegenerationR2 -0.301 4.363 0.48711 0.86638
RegenerationR3 -0.468 4.363 0.36461 0.78004
RegenerationR4 -0.158 4.363 0.77848 0.97986
RegenerationR5 -0.658 4.363 0.21504 0.64990
RegenerationR6 -1.315 4.363 0.02700 0.20569
RegenerationBL 0.665 4.363 0.19814 0.53542
RegenerationTP 0.821 4.363 0.12673 0.53858


Genes with expression patterns similar to MligTC455_45440

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_45440 890 18.54 Mlig455_001967, Mlig455_002069

Neo: -

Age: Down-Up-Down

Region-enriched R2: 3.352/0.00000

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_001967 {REF} {Length: 1676} {TRANSSPLICED} {Pfam: TIR domain [PF13676.8, score=70.0]} {Smed: dd_Smed_v6_5359_0_1, dd_Smed_v6_5359_0_1, [Score=94.0, Expect=2e-21]} {RNA1509_22810, RNA1509_34457, RNA1509_38886, RNA1509_41787, RNA1509_55399} {RNA1310_19554.1, RNA1509_22810, RNA1509_34457, RNA1509_38886, RNA1509_41787, RNA1509_55399} {RNA1509_22810, RNA1509_34457, RNA1509_38886, RNA1509_41787, RNA1509_55399, RNA815_11769}

Mlig455_002069 {REF} {Length: 1675} {TRANSSPLICED} {Pfam: TIR domain [PF13676.8, score=69.5]} {Smed: dd_Smed_v6_5359_0_2, dd_Smed_v6_5359_0_2, [Score=93.6, Expect=4e-21]} {RNA1509_41787} {RNA1310_19554.1} {RNA815_11769}
2. MligTC455_46197 1085 22.61 Mlig455_032287, Mlig455_047132, Mlig455_047137, Mlig455_068482

Neo: -

Age: -

 KREMEN2 1.907 - - 0.968 0.939 - -

Mlig455_032287 {REF} {Length: 948} {Pfam: WSC domain [PF01822.21, score=59.5]} {Human: ENSG00000131650, KREMEN2, kringle containing transmembrane protein 2, [Score=56.6, Expect=5e-09]} {Mouse: ENSMUSG00000020393, Kremen1, kringle containing transmembrane protein 1, [Score=68.2, Expect=5e-13]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=57.0, Expect=3e-09]} {RNA1509_59284} {RNA1310_43884} {RNA815_21749.2}

Mlig455_047132 {REF} {Length: 1046} {Pfam: WSC domain [PF01822.21, score=60.6]} {Human: ENSG00000131650, KREMEN2, kringle containing transmembrane protein 2, [Score=48.9, Expect=2e-06]} {Mouse: ENSMUSG00000040680, Kremen2, kringle containing transmembrane protein 2, [Score=48.9, Expect=1e-06]; ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=47.4, Expect=5e-06]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=51.6, Expect=2e-07]} {RNA1509_59284} {RNA1310_43884} {RNA815_21749.2}

Mlig455_047137 {REF} {Length: 1045} {Pfam: WSC domain [PF01822.21, score=51.2]} {RNA1509_59284} {RNA1310_43884} {RNA815_21749.2}

Mlig455_068482 {REF} {Length: 965} {Pfam: WSC domain [PF01822.21, score=57.6]} {Human: ENSG00000131650, KREMEN2, kringle containing transmembrane protein 2, [Score=52.4, Expect=1e-07]; ENSG00000179314, WSCD1, WSC domain containing 1, [Score=52.4, Expect=2e-07]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=53.5, Expect=4e-08]; ENSMUSG00000040680, Kremen2, kringle containing transmembrane protein 2, [Score=52.4, Expect=1e-07]; ENSMUSG00000020811, Wscd1, WSC domain containing 1, [Score=51.2, Expect=2e-07]} {Celegans: WBGene00005024, sqv-6, Xylosyltransferase sqv-6, [Score=45.8, Expect=9e-06]} {RNA1509_59284} {RNA1310_52794.1} {RNA815_21749.1}
3. MligTC455_16503 1059 22.07 Mlig455_021794

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.520

Region-enriched R2: 1.466/0.04615

Regeneration-downregulated R6: -2.893

Regeneration-depleted R6: -2.893

 1.752 - - - 0.792 - 0.960 Mlig455_021794 {REF} {Length: 2949} {RNA1509_22031, RNA1509_7123} {RNA1310_9167, RNA1509_22031, RNA1509_7123} {RNA1509_22031, RNA1509_7123, RNA815_5039.1}
4. MligTC455_22765 1243 25.9 Mlig455_043090

Neo: -

Age: logFC(26M/2M)=0.341

 ELOVL4 1.75 - - 0.800 - - 0.950 Mlig455_043090 {REF} {Length: 2896} {TRANSSPLICED} {Pfam: GNS1/SUR4 family [PF01151.20, score=220.9]} {Human: ENSG00000118402, ELOVL4, ELOVL fatty acid elongase 4, [RH, Score=323, Expect=1e-110]} {Mouse: ENSMUSG00000032262, Elovl4, elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4, [RH, Score=317, Expect=2e-108]} {Dmel: FBgn0052072, Elo68alpha, Elongase 68alpha, [RH, Score=219, Expect=9e-71]} {Celegans: WBGene00001245, elo-7, Elongation of very long chain fatty acids protein, [Score=80.5, Expect=3e-17]} {Smed: dd_Smed_v6_7835_0_1, dd_Smed_v6_7835_0_1, [RH, Score=358, Expect=3e-125]} {RNA1509_33854} {RNA1310_6579.1, RNA1509_33854} {RNA1509_33854, RNA815_7910}
5. MligTC455_47340 1613 33.6 Mlig455_067342

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.480

 1.734 - - 0.781 - 0.953 - Mlig455_067342 {REF} {Length: 1430} {RNA1509_11932} {RNA1310_46975.1, RNA1509_11932} {RNA1509_11932, RNA815_50642}
6. MligTC455_26574 1008 21 Mlig455_036012

Neo: -

Age: -

Region-enriched R2: 1.522/0.03494

 MAP3K19 1.733 - 0.780 - 0.953 - - Mlig455_036012 {REF} {Length: 2945} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=314.2]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=250.5]; Fungal protein kinase [PF17667.3, score=46.2]; Kinase-like [PF14531.8, score=44.9]; ABC1 atypical kinase-like domain [PF03109.18, score=30.3]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=136, Expect=1e-33]} {Mouse: ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=135, Expect=3e-33]} {Dmel: FBgn0024329, Mekk1, [Score=125, Expect=4e-29]} {Celegans: WBGene00006941, wnk-1, Serine/threonine-protein kinase WNK, [Score=110, Expect=9e-25]} {Smed: dd_Smed_v6_4849_0_2, dd_Smed_v6_4849_0_2, [Score=126, Expect=6e-30]} {RNA1509_1991, RNA1509_42299} {RNA1310_4947, RNA1509_1991, RNA1509_42299} {RNA1509_1991, RNA1509_42299, RNA815_3455}
7. MligTC455_09987 213 4.43 Mlig455_061259

Neo: -

Age: -

 1.726 - - 0.767 0.959 - - Mlig455_061259 {REF} {Length: 878} {Pfam: Phosphotyrosine interaction domain (PTB/PID) [PF14719.8, score=36.3]} {RNA1509_35099} {RNA1310_42966} {RNA815_24864}
8. MligTC455_35487 3520 73.32 Mlig455_001084, Mlig455_001093

Neo: -

Age: logFC(26M/2M)=-0.320

Region-specific R2: 1.362

 1.698 - - - 0.741 - 0.957

Mlig455_001084 {REF} {Length: 3041} {TRANSSPLICED} {Pfam: Acetyl-CoA hydrolase/transferase C-terminal domain [PF13336.8, score=193.8]; Acetyl-CoA hydrolase/transferase N-terminal domain [PF02550.17, score=88.7]} {Dmel: FBgn0039737, CG7920, [RH, Score=523, Expect=0.0]} {Celegans: WBGene00016630, acer-1, ACEtyl-CoA Regulator, [RH, Score=505, Expect=3e-177]} {Smed: dd_Smed_v6_1775_0_1, dd_Smed_v6_1775_0_1, [RH, Score=602, Expect=0.0]} {RNA1509_2322, RNA1509_28495} {RNA1310_12077.1, RNA1509_2322, RNA1509_28495} {RNA1509_2322, RNA1509_28495, RNA815_3460.1}

Mlig455_001093 {REF} {Length: 2952} {TRANSSPLICED} {Pfam: Acetyl-CoA hydrolase/transferase C-terminal domain [PF13336.8, score=192.4]; Acetyl-CoA hydrolase/transferase N-terminal domain [PF02550.17, score=88.7]} {Dmel: FBgn0039737, CG7920, [RH, Score=520, Expect=0.0]} {Celegans: WBGene00016630, acer-1, ACEtyl-CoA Regulator, [RH, Score=502, Expect=6e-176]} {Smed: dd_Smed_v6_1775_0_1, dd_Smed_v6_1775_0_1, [RH, Score=606, Expect=0.0]} {RNA1509_11903, RNA1509_27965} {RNA1310_12077.2, RNA1509_11903, RNA1509_27965} {RNA1509_11903, RNA1509_27965, RNA815_3460.1}
9. MligTC455_06965 768 15.99 Mlig455_011672, Mlig455_011674, Mlig455_049919

Neo: -

Age: Down-Up-Up

 NOTCH1 1.694 - - - 0.744 0.950 -

Mlig455_011672 {REF} {Length: 815} {RNA1509_54595} {RNA1310_59282} {RNA815_18996}

Mlig455_011674 {REF} {Length: 490} {NoTransDecoderORF} {RNA1509_54595} {RNA1310_59282} {RNA815_18996}

Mlig455_049919 {REF} {Length: 1587} {Pfam: EGF-like domain [PF00008.29, score=27.3]; EGF-like domain [PF07974.15, score=23.4]; Human growth factor-like EGF [PF12661.9, score=19.7]} {Human: ENSG00000148400, NOTCH1, notch 1, [Score=53.9, Expect=2e-08]} {Mouse: ENSMUSG00000038146, Notch3, notch 3, [Score=52.0, Expect=7e-08]; ENSMUSG00000026923, Notch1, notch 1, [Score=51.6, Expect=9e-08]} {Dmel: FBgn0259140, CG42255, [Score=50.4, Expect=2e-07]} {Smed: dd_Smed_v6_7067_0_1, dd_Smed_v6_7067_0_1, [Score=52.4, Expect=2e-08]} {RNA1509_54595} {RNA1310_59282} {RNA815_18996}
10. MligTC455_52401 60 1.24 Mlig455_048612

Neo: -

Age: -

 1.694 - - 0.950 - - 0.744 Mlig455_048612 {REF} {Length: 856} {RNA1310_39954.1} {RNA815_19596}
11. MligTC455_41396 187 3.9 Mlig455_012937, Mlig455_031470

Neo: -

Age: -

Region-enriched R2: 4.167/0.01146

 1.678 - - 0.960 - - 0.718

Mlig455_012937 {REF} {Length: 1911} {Smed: dd_Smed_v6_11196_0_1, dd_Smed_v6_11196_0_1, [Score=46.6, Expect=1e-06]} {RNA1509_16138} {RNA1310_24329} {RNA815_11818}

Mlig455_031470 {REF} {Length: 1745} {Dmel: FBgn0083971, CG34135, [RH, Score=60.1, Expect=1e-10]} {Smed: dd_Smed_v6_11196_0_1, dd_Smed_v6_11196_0_1, [RH, Score=96.3, Expect=3e-23]} {RNA1509_16138} {RNA1310_24329} {RNA815_11818}
12. MligTC455_41580 574 11.95 Mlig455_001194

Neo: -

Age: -

 RBPMS 1.669 - - 0.716 0.953 - - Mlig455_001194 {REF} {Length: 2007} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=63.4]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=23.1]} {Human: ENSG00000157110, RBPMS, RNA binding protein, mRNA processing factor, [RH, Score=135, Expect=2e-38]; ENSG00000166831, RBPMS2, RNA binding protein, mRNA processing factor 2, [RH, Score=134, Expect=1e-37]} {Mouse: ENSMUSG00000032387, Rbpms2, RNA binding protein with multiple splicing 2, [RH, Score=138, Expect=2e-39]; ENSMUSG00000031586, Rbpms, RNA binding protein gene with multiple splicing, [RH, Score=133, Expect=1e-37]} {Dmel: FBgn0263995, cpo, couch potato, [RH, Score=203, Expect=1e-59]} {Celegans: WBGene00003172, mec-8, Mec-8 protein, [RH, Score=144, Expect=5e-41]} {Smed: dd_Smed_v6_4296_0_3, dd_Smed_v6_4296_0_3, [RH, Score=161, Expect=2e-47]} {RNA1509_12950} {RNA1310_3819.2} {RNA815_19117.1}
13. MligTC455_28168 822 17.12 Mlig455_023828

Neo: -

Age: -

 1.654 - - - 0.703 - 0.951 Mlig455_023828 {REF} {Length: 3967} {Smed: dd_Smed_v6_6429_0_1, dd_Smed_v6_6429_0_1, [Score=99.0, Expect=5e-22]} {RNA1509_9848} {RNA1310_8221} {RNA815_6368.1}
14. MligTC455_28290 3376 70.34 Mlig455_044067

Neo: -

Age: Down-Up-Down

 CFAP20 0.98 - - - - 0.980 - Mlig455_044067 {REF} {Length: 4113} {Pfam: Protein of unknown function (DUF667) [PF05018.15, score=305.8]} {Human: ENSG00000070761, CFAP20, cilia and flagella associated protein 20, [RH, Score=367, Expect=5e-131]} {Mouse: ENSMUSG00000031796, Cfap20, cilia and flagella associated protein 20, [RH, Score=369, Expect=3e-132]} {Dmel: FBgn0032248, Bug22, Basal body up regulated gene 22, [RH, Score=366, Expect=7e-131]} {Celegans: WBGene00008288, C54C6.6, Cilia- and flagella-associated protein 20, [RH, Score=339, Expect=2e-120]} {Smed: dd_Smed_v6_4843_0_1, dd_Smed_v6_4843_0_1, [RH, Score=362, Expect=2e-129]} {RNA1509_12798, RNA1509_53743, RNA1509_58054} {RNA1310_22744, RNA1509_53743, RNA1509_58054} {RNA1509_53743, RNA1509_58054, RNA815_16931.2}
15. MligTC455_35002 390 8.12 Mlig455_070372

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.711

 SVEP1 0.97 - - - 0.970 - - Mlig455_070372 {REF} {Length: 1042} {Pfam: EGF-like domain [PF00008.29, score=33.8]; EGF-like domain [PF07974.15, score=21.9]} {Human: ENSG00000165124, SVEP1, sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1, [Score=51.6, Expect=3e-07]; ENSG00000148400, NOTCH1, notch 1, [Score=51.2, Expect=4e-07]} {Mouse: ENSMUSG00000047793, Sned1, sushi, nidogen and EGF-like domains 1, [Score=58.9, Expect=5e-10]} {Dmel: FBgn0004647, N, Notch, [Score=50.1, Expect=4e-07]} {RNA1509_29817} {RNA1310_28236} {RNA815_11876.1}
16. MligTC455_41581 438 9.13 Mlig455_001354

Neo: -

Age: -

 RBPMS 0.969 - - - 0.969 - - Mlig455_001354 {REF} {Length: 2343} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=63.4]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=23.1]} {Human: ENSG00000157110, RBPMS, RNA binding protein, mRNA processing factor, [RH, Score=135, Expect=2e-38]; ENSG00000166831, RBPMS2, RNA binding protein, mRNA processing factor 2, [RH, Score=134, Expect=1e-37]} {Mouse: ENSMUSG00000032387, Rbpms2, RNA binding protein with multiple splicing 2, [RH, Score=138, Expect=2e-39]; ENSMUSG00000031586, Rbpms, RNA binding protein gene with multiple splicing, [RH, Score=133, Expect=1e-37]} {Dmel: FBgn0263995, cpo, couch potato, [RH, Score=203, Expect=1e-59]} {Celegans: WBGene00003172, mec-8, Mec-8 protein, [RH, Score=144, Expect=5e-41]} {Smed: dd_Smed_v6_4296_0_3, dd_Smed_v6_4296_0_3, [RH, Score=161, Expect=2e-47]} {RNA1509_12950} {RNA1310_3819.2} {RNA815_19117.1}
17. MligTC455_43225 1135 23.64 Mlig455_028905

Neo: -

Age: Down-Up-Up

 GRM3 0.967 - - - 0.967 - - Mlig455_028905 {REF} {Length: 3858} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=107.1]; Receptor family ligand binding region [PF01094.30, score=53.1]} {Human: ENSG00000198822, GRM3, glutamate metabotropic receptor 3, [Score=121, Expect=1e-27]} {Mouse: ENSMUSG00000003974, Grm3, glutamate receptor, metabotropic 3, [Score=122, Expect=8e-28]} {Dmel: FBgn0050361, mtt, mangetout, [Score=131, Expect=9e-31]} {Celegans: WBGene00003233, mgl-2, Metabotropic GLutamate receptor family, [Score=64.3, Expect=3e-10]} {Smed: dd_Smed_v6_32826_0_1, dd_Smed_v6_32826_0_1, [Score=66.6, Expect=4e-11]} {RNA1509_36690, RNA1509_57807, RNA1509_8888} {RNA1310_2635, RNA1509_36690, RNA1509_57807, RNA1509_8888} {RNA1509_36690, RNA1509_57807, RNA1509_8888, RNA815_904}
18. MligTC455_26415 2005 41.78 Mlig455_001522, Mlig455_021111

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.344

Region-specific R2: 2.002

Region-enriched R8: 1.590/0.00032
Region-enriched R2: 1.465/0.00020

 0.966 - - - - - 0.966

Mlig455_001522 {REF} {Length: 3040} {Pfam: Family of unknown function (DUF5580) [PF17743.3, score=85.0]} {Smed: dd_Smed_v6_9326_0_1, dd_Smed_v6_9326_0_1, [Score=167, Expect=3e-44]} {RNA1509_39579} {RNA1310_4999.1} {RNA815_4435}

Mlig455_021111 {REF} {Length: 2843} {Pfam: Family of unknown function (DUF5580) [PF17743.3, score=85.7]} {Smed: dd_Smed_v6_9326_0_1, dd_Smed_v6_9326_0_1, [Score=167, Expect=1e-44]} {RNA1509_4141} {RNA1310_6622.2} {RNA815_8857}
19. MligTC455_20201 1626 33.88 Mlig455_025333

Neo: -

Age: logFC(26M/2M)=-0.331

 TRPA1 0.962 - - - - - 0.962 Mlig455_025333 {REF} {Length: 5343} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=283.4]; Ankyrin repeat [PF00023.32, score=234.0]; Ankyrin repeats (many copies) [PF13637.8, score=227.4]; Ankyrin repeat [PF13606.8, score=217.2]; Ankyrin repeats (many copies) [PF13857.8, score=212.6]; Ion transport protein [PF00520.33, score=53.3]} {Human: ENSG00000104321, TRPA1, transient receptor potential cation channel subfamily A member 1, [Score=368, Expect=5e-107]} {Mouse: ENSMUSG00000032769, Trpa1, transient receptor potential cation channel, subfamily A, member 1, [Score=363, Expect=2e-105]} {Dmel: FBgn0035934, TrpA1, Transient receptor potential cation channel A1, [Score=325, Expect=8e-92]} {Celegans: WBGene00007801, trpa-1, Transient receptor potential cation channel subfamily A member 1 homolog, [Score=489, Expect=2e-150]} {Smed: dd_Smed_v6_6201_0_1, dd_Smed_v6_6201_0_1, [RH, Score=754, Expect=0.0]} {RNA1509_20092} {RNA1310_1173, RNA1509_20092} {RNA1509_20092, RNA815_336}
20. MligTC455_41743 720 15.01 Mlig455_043677

Neo: -

Age: -

 CERS5 0.962 - - - - - 0.962 Mlig455_043677 {REF} {Length: 2949} {TRANSSPLICED} {Pfam: TLC domain [PF03798.18, score=142.3]; Homeodomain [PF00046.31, score=28.0]} {Human: ENSG00000139624, CERS5, ceramide synthase 5, [RH, Score=246, Expect=1e-77]; ENSG00000172292, CERS6, ceramide synthase 6, [RH, Score=236, Expect=6e-74]; ENSG00000143418, CERS2, ceramide synthase 2, [RH, Score=236, Expect=3e-74]} {Mouse: ENSMUSG00000023021, Cers5, ceramide synthase 5, [RH, Score=267, Expect=1e-85]} {Dmel: FBgn0040918, schlank, [RH, Score=224, Expect=2e-69]} {Celegans: WBGene00002043, hyl-1, Ceramide synthase hyl-1, [RH, Score=161, Expect=1e-46]} {Smed: dd_Smed_v6_4223_0_1, dd_Smed_v6_4223_0_1, [RH, Score=232, Expect=2e-73]} {RNA1509_46469} {RNA1310_13424.1} {RNA815_10078.1}
21. MligTC455_41389 111 2.31 Mlig455_024385

Neo: -

Age: -

 0.961 - - - 0.961 - - Mlig455_024385 {REF} {Length: 569} {NoTransDecoderORF} {RNA1509_15591} {RNA1310_81202.1} {RNA815_31796}
22. MligTC455_49206 859 17.89 Mlig455_004480

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_004480 {REF} {Length: 1143} {RNA1509_33030, RNA1509_49653} {RNA1310_49359.1, RNA1509_33030, RNA1509_49653} {RNA1509_33030, RNA1509_49653, RNA815_26981}
23. MligTC455_54077 937 19.53 Mlig455_032159, Mlig455_032165

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.640

 TLL2 0.957 - - - 0.957 - -

Mlig455_032159 {REF} {Length: 1358} {RNA1509_9300} {RNA1310_18452} {RNA815_8451}

Mlig455_032165 {REF} {Length: 1696} {Pfam: CUB domain [PF00431.22, score=63.7]} {Human: ENSG00000095587, TLL2, tolloid like 2, [Score=62.8, Expect=4e-10]; ENSG00000107611, CUBN, cubilin, [Score=62.0, Expect=1e-09]; ENSG00000038295, TLL1, tolloid like 1, [Score=61.2, Expect=1e-09]} {Mouse: ENSMUSG00000026726, Cubn, cubilin (intrinsic factor-cobalamin receptor), [Score=68.9, Expect=4e-12]} {Dmel: FBgn0004885, tok, tolkin, [Score=58.2, Expect=8e-09]} {Smed: dd_Smed_v6_5652_0_1, dd_Smed_v6_5652_0_1, [Score=61.2, Expect=4e-10]} {RNA1509_9300} {RNA1310_18452} {RNA815_8451}
24. MligTC455_34834 126 2.62 Mlig455_036550, Mlig455_057800, Mlig455_057817

Neo: Int S/G2/M

Age: -

 0.955 - - - 0.955 - -

Mlig455_036550 {REF} {Length: 2962} {RNA1509_42812} {RNA1310_32131} {RNA815_46120}

Mlig455_057800 {REF} {Length: 3033} {RNA1509_42812} {RNA1310_32131} {RNA815_46120}

Mlig455_057817 {REF} {Length: 2955} {RNA1509_42812} {RNA1310_32131} {RNA815_46120}
25. MligTC455_28164 136 2.83 Mlig455_045835

Neo: -

Age: -

 LRRC9 0.954 - - - 0.954 - - Mlig455_045835 {REF} {Length: 10638} {Pfam: Leucine-rich repeat [PF14580.8, score=159.3]; Leucine Rich repeats (2 copies) [PF12799.9, score=149.0]; Leucine rich repeat [PF13855.8, score=111.3]} {Human: ENSG00000131951, LRRC9, leucine rich repeat containing 9, [RH, Score=436, Expect=2e-129]} {Mouse: ENSMUSG00000021090, Lrrc9, leucine rich repeat containing 9, [RH, Score=639, Expect=0.0]} {Dmel: FBgn0039728, CG7896, [Score=74.7, Expect=6e-13]} {Celegans: WBGene00020266, T05H4.3, [RH, Score=80.1, Expect=8e-15]} {Smed: dd_Smed_v6_14851_0_1, dd_Smed_v6_14851_0_1, [RH, Score=369, Expect=2e-108]} {RNA1509_22179, RNA1509_44615} {RNA1310_1731, RNA1509_44615} {RNA1509_44615, RNA815_589.1}
26. MligTC455_40509 462 9.63 Mlig455_049594

Neo: -

Age: Up-Down-Up

 CROCC 0.954 - - 0.954 - - - Mlig455_049594 {REF} {Length: 4171} {Pfam: Leucine-zipper of ternary complex factor MIP1 [PF14389.8, score=176.1]; TATA element modulatory factor 1 TATA binding [PF12325.10, score=150.6]; Protein of unknown function (DUF724) [PF05266.16, score=144.7]; BRE1 E3 ubiquitin ligase [PF08647.13, score=141.0]; Afadin- and alpha -actinin-Binding [PF11559.10, score=137.9]; Crescentin protein [PF19220.2, score=134.7]; SlyX [PF04102.14, score=130.3]; Protein of unknown function (DUF1664) [PF07889.14, score=126.0]; Coiled-coil region of CCDC155 or KASH [PF14662.8, score=115.9]; Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 [PF10473.11, score=112.0]; Domain of unknown function (DUF5082) [PF16888.7, score=110.9]; Septum formation initiator [PF04977.17, score=110.7]; Ezrin/radixin/moesin family [PF00769.21, score=110.1]; AAA domain [PF13166.8, score=109.8]; Apg6 coiled-coil region [PF17675.3, score=103.5]; Autophagy protein 16 (ATG16) [PF08614.13, score=102.0]; TATA element modulatory factor 1 DNA binding [PF12329.10, score=101.6]; Domain of unknown function (DUF4472) [PF14739.8, score=100.1]; Flagella accessory protein C (FlaC) [PF05377.13, score=97.2]; Baculovirus polyhedron envelope protein, PEP, C terminus [PF04513.14, score=92.8]; Sf6-type phage tail needle knob or tip of some Caudovirales [PF16532.7, score=87.8]; Valyl tRNA synthetase tRNA binding arm [PF10458.11, score=87.6]; Fibrinogen alpha/beta chain family [PF08702.12, score=84.5]; Growth-arrest specific micro-tubule binding [PF13851.8, score=83.1]; Uso1 / p115 like vesicle tethering protein, C terminal region [PF04871.15, score=78.3]; Spc24 subunit of Ndc80 [PF08286.13, score=77.6]; Tropomyosin like [PF12718.9, score=77.1]; ABC transporter C-terminal domain [PF16326.7, score=75.6]; Fez1 [PF06818.17, score=73.0]; Calcium binding and coiled-coil domain (CALCOCO1) like [PF07888.13, score=72.9]; Basic region leucine zipper [PF07716.17, score=71.6]; Plant protein of unknown function (DUF641) [PF04859.14, score=70.4]; gp58-like protein [PF07902.13, score=67.1]; Protein of unknown function (DUF3450) [PF11932.10, score=64.2]; Protein of unknown function DUF16 [PF01519.18, score=63.2]; Leucine zipper [PF15294.8, score=63.0]; Ciliary protein causing Leber congenital amaurosis disease [PF15619.8, score=62.5]; Troponin [PF00992.22, score=59.9]; Protein of unknown function (DUF812) [PF05667.13, score=58.5]; bZIP transcription factor [PF00170.23, score=55.9]; C-terminal leucine zipper domain of cyclic nucleotide-gated channels [PF16526.7, score=52.0]; Myosin tail [PF01576.21, score=50.7]; N-terminal domain of unknown function (DUF4140) [PF13600.8, score=49.6]; Family of unknown function (DUF6262) [PF19776.1, score=49.6]; Centrosomin N-terminal motif 1 [PF07989.13, score=46.9]; Biogenesis of lysosome-related organelles complex-1 subunit 2 [PF10046.11, score=46.7]; Tektin family [PF03148.16, score=39.4]; Golgi transport complex subunit 5 [PF10392.11, score=38.2]; Laminin Domain I [PF06008.16, score=37.3]; Centrosomal protein of 63 kDa [PF17045.7, score=37.1]; GrpE [PF01025.21, score=36.5]; Intermediate filament protein [PF00038.23, score=35.6]; Nsp1-like C-terminal region [PF05064.15, score=34.2]; Haemolysin XhlA [PF10779.11, score=33.9]; Protein of unknown function (DUF1192) [PF06698.13, score=32.9]; Arabidopsis phospholipase-like protein (PEARLI 4) [PF05278.14, score=32.5]; RIM-binding protein of the cytomatrix active zone [PF10174.11, score=27.5]; Microtubule-associated protein 70 [PF07058.13, score=27.3]; Bacterial type III secretion protein (HrpB7) [PF09486.12, score=27.1]; Mechanosensitive ion channel porin domain [PF12795.9, score=25.3]; Domain of unknown function [PF16378.7, score=24.3]; Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain [PF16454.7, score=24.3]; Spindle Pole Component 29 [PF17082.7, score=24.0]; Dynamin-like helical domain [PF18709.3, score=22.7]; Centrosome localisation domain of PPC89 [PF14197.8, score=22.6]; Cell division protein ZapB [PF06005.14, score=19.1]; Domain of unknown function (DUF4349) [PF14257.8, score=18.0]} {Human: ENSG00000058453, CROCC, ciliary rootlet coiled-coil, rootletin, [Score=60.5, Expect=2e-08]; ENSG00000102189, EEA1, early endosome antigen 1, [Score=59.7, Expect=3e-08]; ENSG00000115355, CCDC88A, coiled-coil domain containing 88A, [Score=59.3, Expect=3e-08]} {Mouse: ENSMUSG00000034243, Golgb1, golgi autoantigen, golgin subfamily b, macrogolgin 1, [RH, Score=52.4, Expect=3e-06]} {Dmel: FBgn0046323, ORY, Occludin-Related Y, [Score=57.4, Expect=6e-08]} {Celegans: WBGene00022500, lfi-1, Lin-5 (Five) Interacting protein, [Score=70.1, Expect=8e-12]} {Smed: dd_Smed_v6_5291_0_1, dd_Smed_v6_5291_0_1, [Score=74.3, Expect=2e-13]} {RNA1509_35903} {RNA1310_53710.1} {RNA815_27781.1}
27. MligTC455_34895 320 6.66 Mlig455_041148

Neo: -

Age: Up-Down-Down

 0.953 - - 0.953 - - - Mlig455_041148 {REF} {Length: 6869} {TRANSSPLICED} {Pfam: Fibronectin type III domain [PF00041.23, score=34.4]; Scramblase [PF03803.17, score=18.5]} {Smed: dd_Smed_v6_66647_0_1, dd_Smed_v6_66647_0_1, [Score=113, Expect=6e-28]} {RNA1509_18182} {RNA1310_652.1} {RNA815_333}
28. MligTC455_46572 405 8.44 Mlig455_013456

Neo: -

Age: -

 NEK11 0.953 - - - - 0.953 - Mlig455_013456 {REF} {Length: 3181} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=200.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=152.7]} {Human: ENSG00000114670, NEK11, NIMA related kinase 11, [RH, Score=340, Expect=4e-109]} {Mouse: ENSMUSG00000035032, Nek11, NIMA (never in mitosis gene a)-related expressed kinase 11, [RH, Score=331, Expect=6e-104]} {Dmel: FBgn0045980, niki, nimA-like kinase, [Score=166, Expect=7e-43]} {Celegans: WBGene00021461, nekl-1, NEK (NEver in mitosis Kinase) Like, [Score=184, Expect=9e-49]} {Smed: dd_Smed_v6_9098_0_1, dd_Smed_v6_9098_0_1, [RH, Score=338, Expect=1e-107]} {RNA1509_18086, RNA1509_51058} {RNA1310_9923.1, RNA1509_18086, RNA1509_51058} {RNA1509_18086, RNA1509_51058, RNA815_8184}
29. MligTC455_47198 2558 53.29 Mlig455_027629

Neo: -

Age: -

Regeneration-downregulated R6: -1.588

Regeneration-depleted R6: -1.588

 CALML5 0.953 - - - 0.953 - - Mlig455_027629 {REF} {Length: 1182} {Pfam: EF-hand domain pair [PF13499.8, score=89.4]; EF hand [PF00036.34, score=83.6]; EF-hand domain [PF13405.8, score=76.7]; EF hand [PF13202.8, score=71.0]; EF-hand domain pair [PF13833.8, score=47.0]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=29.4]; EF-hand domain [PF14658.8, score=23.3]; Dockerin type I domain [PF00404.20, score=21.6]; Caleosin related protein [PF05042.15, score=19.7]} {Human: ENSG00000178372, CALML5, calmodulin like 5, [Score=62.4, Expect=1e-12]} {Mouse: ENSMUSG00000063130, Calml3, calmodulin-like 3, [Score=57.4, Expect=8e-11]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=59.3, Expect=1e-11]} {Celegans: WBGene00017394, cal-8, CALmodulin related genes, [Score=68.2, Expect=3e-15]} {Smed: dd_Smed_v6_5204_0_1, dd_Smed_v6_5204_0_1, [RH, Score=117, Expect=2e-34]} {RNA1509_34897, RNA1509_5257} {RNA1310_35147, RNA1509_34897, RNA1509_5257} {RNA1509_34897, RNA1509_5257, RNA815_17506}
30. MligTC455_09417 82 1.7 Mlig455_024500

Neo: -

Age: -

Region-enriched R7: 4.042/0.00059
Region-enriched R6: 3.087/0.00912

Regeneration-downregulated R6: -6.946

Regeneration-depleted R6: -6.946

 0.95 - - - 0.950 - - Mlig455_024500 {REF} {Length: 803} {NoTransDecoderORF} {RNA1509_15591} {RNA1310_17110}
31. MligTC455_30659 7438 154.97 Mlig455_008135, Mlig455_012766, Mlig455_021205, Mlig455_026385, Mlig455_035726, Mlig455_035727, Mlig455_067397, Mlig455_070688, Mlig455_070937

Neo: -

Age: Down-Up-Down

Region-enriched R8: 1.647/0.04332

 KMT5A 0.95 - - - - 0.950 -

Mlig455_008135 {REF} {Length: 3237} {RNA1509_2996} {RNA1310_18007} {RNA815_15022}

Mlig455_012766 {REF} {Length: 4660} {TRANSSPLICED} {RNA1509_2996} {RNA1310_18007} {RNA815_15022}

Mlig455_021205 {REF} {Length: 3235} {RNA1509_2996} {RNA1310_18007} {RNA815_15022}

Mlig455_026385 {REF} {Length: 2839} {TRANSSPLICED} {RNA1509_44078} {RNA1310_33930} {RNA815_15022}

Mlig455_035726 {REF} {Length: 1020} {Pfam: SET domain [PF00856.30, score=45.1]} {Human: ENSG00000183955, KMT5A, lysine methyltransferase 5A, [Score=62.4, Expect=2e-10]} {Mouse: ENSMUSG00000049327, Kmt5a, lysine methyltransferase 5A, [Score=64.7, Expect=2e-11]} {Dmel: FBgn0011474, PR-Set7, PR/SET domain containing protein 7, [Score=76.6, Expect=3e-15]} {Celegans: WBGene00004781, set-1, Histone-lysine N-methyltransferase set-1, [Score=77.0, Expect=2e-16]} {Smed: dd_Smed_v6_5677_0_1, dd_Smed_v6_5677_0_1, [Score=78.2, Expect=2e-16]} {RNA1509_2996} {RNA1310_18007} {RNA815_15022}

Mlig455_035727 {REF} {Length: 2924} {TRANSSPLICED} {RNA1509_44078} {RNA1310_31019} {RNA815_15022}

Mlig455_067397 {REF} {Length: 2535} {RNA1509_2996} {RNA1310_18007} {RNA815_15022}

Mlig455_070688 {REF} {Length: 2537} {RNA1509_2996} {RNA1310_18007, RNA1509_2996} {RNA1509_2996, RNA815_15022}

Mlig455_070937 {REF} {Length: 2433} {RNA1509_2996, RNA1509_31638} {RNA1310_18007, RNA1509_31638} {RNA1509_31638, RNA815_15022}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA