Data search
Results for MligTC455_46002
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_46002 | 717 | 14.94 | Mlig455_051100 | Neo: Int S/G2/M Age: Down-Up-Up Region-enriched R5: 1.188/0.00025 |
Mlig455_051100 {REF} {Length: 1685} {TRANSSPLICED} {Pfam: LSM domain [PF01423.24, score=28.0]} {RNA1509_25661, RNA1509_32445, RNA1509_50336} {RNA1310_38539.1, RNA1509_25661, RNA1509_32445, RNA1509_50336} {RNA1509_25661, RNA1509_32445, RNA1509_50336, RNA815_41179} |
Cumulative graph for MligTC455_46002
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | 0.169 | 4.201 | 0.84322 | 1.00000 | |
| RegionR2 | 0.256 | 4.201 | 0.54915 | 0.91520 | |
| RegionR3 | 0.672 | 4.201 | 0.03251 | 0.31136 | |
| RegionR4 | 0.245 | 4.201 | 0.51276 | 0.83885 | |
| RegionR5 | 1.188 | 4.201 | 0.00001 | 0.00025 | |
| RegionR6 | -0.047 | 4.201 | 0.89416 | 1.00000 | |
| RegionR7 | -1.462 | 4.201 | 0.00611 | 0.12564 | |
| RegionR8 | -1.022 | 4.201 | 0.08504 | 0.55249 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -7.127 | 4.201 | 0.05878 | 0.72416 | |
| RegenerationR2 | -0.576 | 4.201 | 0.12561 | 0.54823 | |
| RegenerationR3 | -0.311 | 4.201 | 0.40861 | 0.80752 | |
| RegenerationR4 | 0.156 | 4.201 | 0.68265 | 0.94640 | |
| RegenerationR5 | -0.333 | 4.201 | 0.30343 | 0.73061 | |
| RegenerationR6 | 0.581 | 4.201 | 0.15158 | 0.47714 | |
| RegenerationBL | 0.974 | 4.201 | 0.07551 | 0.32114 | |
| RegenerationTP | 1.062 | 4.201 | 0.07614 | 0.44132 |
Genes with expression patterns similar to MligTC455_46002
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_46002 | 717 | 14.94 | Mlig455_051100 | Neo: Int S/G2/M Age: Down-Up-Up Region-enriched R5: 1.188/0.00025 |
6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_051100 {REF} {Length: 1685} {TRANSSPLICED} {Pfam: LSM domain [PF01423.24, score=28.0]} {RNA1509_25661, RNA1509_32445, RNA1509_50336} {RNA1310_38539.1, RNA1509_25661, RNA1509_32445, RNA1509_50336} {RNA1509_25661, RNA1509_32445, RNA1509_50336, RNA815_41179} | |
| 2. | MligTC455_20567 | 660 | 13.75 | Mlig455_008531 | Neo: Int S/G2/M Age: logFC(26M/2M)=0.264 Region-enriched R5: 1.258/0.00131 |
TARDBP | 0.974 | - | - | - | - | - | 0.974 | Mlig455_008531 {REF} {Length: 4468} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=59.6]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=23.4]} {Human: ENSG00000120948, TARDBP, TAR DNA binding protein, [Score=122, Expect=2e-29]; ENSG00000277726, AL109811.4, novel protein, [Score=121, Expect=5e-30]} {Mouse: ENSMUSG00000041459, Tardbp, TAR DNA binding protein, [Score=116, Expect=1e-27]} {Dmel: FBgn0025790, TBPH, TAR DNA-binding protein-43 homolog, [Score=122, Expect=1e-30]} {Celegans: WBGene00006514, tdp-1, Tar DNA-binding protein homolog 1, [Score=101, Expect=6e-23]} {Smed: dd_Smed_v6_10863_0_1, dd_Smed_v6_10863_0_1, [Score=95.5, Expect=5e-21]} {RNA1509_16169} {RNA1310_17479.1} {RNA815_26518.1} |
| 3. | MligTC455_22991 | 15745 | 328.01 | Mlig455_046872 | Neo: - |
ATP5PD | 0.963 | - | - | - | 0.963 | - | - | Mlig455_046872 {REF} {Length: 1034} {TRANSSPLICED} {Pfam: ATP synthase D chain, mitochondrial (ATP5H) [PF05873.14, score=115.2]} {Human: ENSG00000167863, ATP5PD, ATP synthase peripheral stalk subunit d, [RH, Score=74.3, Expect=1e-16]} {Mouse: ENSMUSG00000034566, Atp5h, ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D, [RH, Score=78.6, Expect=2e-18]} {Dmel: FBgn0016120, ATPsynD, ATP synthase, subunit D, [RH, Score=92.0, Expect=2e-23]} {Celegans: WBGene00007385, atp-5, ATP synthase subunit, [RH, Score=67.0, Expect=5e-14]} {Smed: dd_Smed_v6_1461_0_1, dd_Smed_v6_1461_0_1, [RH, Score=103, Expect=2e-28]} {RNA1509_1288, RNA1509_2744, RNA1509_2861, RNA1509_9518} {RNA1310_26299.1, RNA1509_1288, RNA1509_2744, RNA1509_2861, RNA1509_9518} {RNA1509_1288, RNA1509_2744, RNA1509_2861, RNA1509_9518, RNA815_15455} |
| 4. | MligTC455_29416 | 1512 | 31.5 | Mlig455_027486, Mlig455_046044 | Neo: Int S/G2/M Age: - |
EED | 0.958 | - | - | - | - | - | 0.958 | Mlig455_027486 {REF} {Length: 1749} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=31.7]} {Human: ENSG00000074266, EED, embryonic ectoderm development, [RH, Score=320, Expect=3e-105]} {Mouse: ENSMUSG00000030619, Eed, embryonic ectoderm development, [RH, Score=320, Expect=2e-105]} {Dmel: FBgn0000588, esc, extra sexcombs, [RH, Score=305, Expect=5e-100]} {Celegans: WBGene00003224, mes-6, Polycomb protein mes-6, [RH, Score=93.2, Expect=2e-20]} {Smed: dd_Smed_v6_7526_0_2, dd_Smed_v6_7526_0_2, [RH, Score=320, Expect=7e-106]} {RNA1509_20410} {RNA1310_18492, RNA1509_20410} {RNA1509_20410, RNA815_8708.1} Mlig455_046044 {REF} {Length: 3166} {Pfam: WD domain, G-beta repeat [PF00400.34, score=33.5]} {Human: ENSG00000074266, EED, embryonic ectoderm development, [Score=257, Expect=2e-82]} {Mouse: ENSMUSG00000030619, Eed, embryonic ectoderm development, [Score=257, Expect=1e-82]} {Dmel: FBgn0032391, escl, [Score=254, Expect=2e-81]} {Celegans: WBGene00003224, mes-6, Polycomb protein mes-6, [Score=81.3, Expect=5e-17]} {Smed: dd_Smed_v6_7526_0_2, dd_Smed_v6_7526_0_2, [Score=277, Expect=9e-91]} {RNA1509_20410} {RNA1310_18492} {RNA815_8708.2} |
| 5. | MligTC455_20833 | 176 | 3.67 | Mlig455_070354 | Neo: - Age: Up-Up-Down |
CUBN | 0.955 | - | - | - | - | - | 0.955 | Mlig455_070354 {REF} {Length: 3209} {Pfam: CUB domain [PF00431.22, score=88.6]; TMEM154 protein family [PF15102.8, score=20.3]} {Human: ENSG00000107611, CUBN, cubilin, [Score=66.2, Expect=2e-10]} {Mouse: ENSMUSG00000047517, Dmbt1, deleted in malignant brain tumors 1, [Score=62.8, Expect=1e-09]} {Dmel: FBgn0031879, uif, uninflatable, [Score=62.8, Expect=1e-09]} {RNA1509_23090} {RNA1310_1548.1} {RNA815_1199.1} |
| 6. | MligTC455_48201 | 494 | 10.28 | Mlig455_048050 | Neo: - Age: - |
0.953 | - | - | - | - | - | 0.953 | Mlig455_048050 {REF} {Length: 1863} {TRANSSPLICED} {Pfam: Arrestin (or S-antigen), C-terminal domain [PF02752.24, score=38.8]; Arrestin (or S-antigen), N-terminal domain [PF00339.31, score=29.0]} {RNA1509_18183, RNA1509_40357} {RNA1310_15828, RNA1509_18183, RNA1509_40357} {RNA1509_18183, RNA1509_40357, RNA815_16683} | |
| 7. | MligTC455_20663 | 552 | 11.51 | Mlig455_031298 | Neo: Neoblast, stringent Age: - Region-enriched R5: 1.075/0.02847 |
HELLS | 0.952 | - | - | - | - | - | 0.952 | Mlig455_031298 {REF} {Length: 5758} {TRANSSPLICED} {Pfam: SNF2-related domain [PF00176.25, score=210.0]; Helicase conserved C-terminal domain [PF00271.33, score=64.4]; Type III restriction enzyme, res subunit [PF04851.17, score=24.2]; Class II histone deacetylase complex subunits 2 and 3 [PF11496.10, score=21.7]} {Human: ENSG00000119969, HELLS, helicase, lymphoid specific, [RH, Score=598, Expect=0.0]} {Mouse: ENSMUSG00000025001, Hells, helicase, lymphoid specific, [Score=599, Expect=0.0]} {Dmel: FBgn0000212, brm, brahma, [Score=244, Expect=1e-66]} {Celegans: WBGene00004204, swsn-4, SWI/SNF nucleosome remodeling complex component; SWI2/SNF2-like protein, [Score=240, Expect=3e-65]} {Smed: dd_Smed_v6_7560_0_1, dd_Smed_v6_7560_0_1, [Score=300, Expect=2e-89]} {RNA1509_22520, RNA1509_23242} {RNA1310_5705, RNA1509_22520, RNA1509_23242} {RNA1509_22520, RNA1509_23242, RNA815_1136} |
| 8. | MligTC455_48327 | 2347 | 48.9 | Mlig455_046907 | Neo: - Age: Up-Down-Up Regeneration-enriched BL: 1.482 |
EIF2S3 | 0.95 | - | - | - | - | - | 0.950 | Mlig455_046907 {REF} {Length: 2665} {TRANSSPLICED} {Pfam: Initiation factor eIF2 gamma, C terminal [PF09173.13, score=114.6]; Elongation factor Tu GTP binding domain [PF00009.29, score=78.7]; Elongation factor Tu domain 2 [PF03144.27, score=44.1]} {Human: ENSG00000130741, EIF2S3, eukaryotic translation initiation factor 2 subunit gamma, [RH, Score=741, Expect=0.0]; ENSG00000180574, EIF2S3B, eukaryotic translation initiation factor 2 subunit gamma B, [RH, Score=736, Expect=0.0]} {Mouse: ENSMUSG00000069049, Eif2s3y, eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked, [RH, Score=745, Expect=0.0]; ENSMUSG00000035150, Eif2s3x, eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked, [RH, Score=741, Expect=0.0]} {Dmel: FBgn0263740, eIF2gamma, eukaryotic translation initiation factor 2 subunit gamma, [RH, Score=713, Expect=0.0]} {Celegans: WBGene00021466, eif-2gamma, Eukaryotic Initiation Factor, [RH, Score=712, Expect=0.0]} {Smed: dd_Smed_v6_980_0_1, dd_Smed_v6_980_0_1, [RH, Score=678, Expect=0.0]} {RNA1509_13308, RNA1509_3210, RNA1509_32670, RNA1509_43746, RNA1509_58895} {RNA1310_16815.1, RNA1509_13308, RNA1509_3210, RNA1509_32670, RNA1509_43746, RNA1509_58895} {RNA1509_13308, RNA1509_3210, RNA1509_32670, RNA1509_43746, RNA1509_58895, RNA815_7319} |
Berezikov Lab - 2020-2021 © ERIBA