M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_46358

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_46358 94 1.95 Mlig455_066966

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.840

 Mlig455_066966 {REF} {Length: 3174} {Pfam: Innexin [PF00876.20, score=311.0]} {Dmel: FBgn0027108, Inx2, Innexin 2, [Score=87.8, Expect=1e-18]} {Celegans: WBGene00006749, unc-9, Innexin unc-9, [Score=193, Expect=6e-57]} {Smed: dd_Smed_v6_8019_0_1, dd_Smed_v6_8019_0_1, [Score=255, Expect=7e-80]} {RNA1509_46847} {RNA1310_9874} {RNA815_3526}

Cumulative graph for MligTC455_46358

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 2.39 1.649 0.22773 0.87174
RegionR2 0.92 1.649 0.30916 0.69991
RegionR3 -1.732 1.649 0.04565 0.37393
RegionR4 -1.544 1.649 0.12084 0.34835
RegionR5 -1.718 1.649 0.02143 0.10184
RegionR6 -0.601 1.649 0.46285 1.00000
RegionR7 0.529 1.649 0.62838 1.00000
RegionR8 1.757 1.649 0.16097 0.72606

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.503 1.649 0.20208 0.94272
RegenerationR2 -0.254 1.649 0.67643 0.94775
RegenerationR3 0.855 1.649 0.38962 0.79581
RegenerationR4 0.729 1.649 0.42431 0.82784
RegenerationR5 0.978 1.649 0.23784 0.67166
RegenerationR6 0.405 1.649 0.65925 0.90297
RegenerationBL -1.87 1.649 0.16620 0.48915
RegenerationTP -1.014 1.649 0.38293 0.81728


Genes with expression patterns similar to MligTC455_46358

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_46358 94 1.95 Mlig455_066966

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.840

 5 1.000 - 1.000 1.000 1.000 1.000 Mlig455_066966 {REF} {Length: 3174} {Pfam: Innexin [PF00876.20, score=311.0]} {Dmel: FBgn0027108, Inx2, Innexin 2, [Score=87.8, Expect=1e-18]} {Celegans: WBGene00006749, unc-9, Innexin unc-9, [Score=193, Expect=6e-57]} {Smed: dd_Smed_v6_8019_0_1, dd_Smed_v6_8019_0_1, [Score=255, Expect=7e-80]} {RNA1509_46847} {RNA1310_9874} {RNA815_3526}
2. MligTC455_19683 30 0.62 Mlig455_009067

Neo: -

Age: Up-Down-Down

 0.987 - - - 0.987 - - Mlig455_009067 {REF} {Length: 1668} {RNA1509_57072} {RNA1310_25564} {RNA815_54244}
3. MligTC455_20519 7 0.15 Mlig455_028805

Neo: -

Age: -

 0.984 - - - 0.984 - - Mlig455_028805 {REF} {Length: 911} {RNA1509_20946} {RNA1310_96877} {RNA815_50428}
4. MligTC455_03350 34 0.71 Mlig455_016875

Neo: -

Age: -

 JMJD6 0.977 - - - 0.977 - - Mlig455_016875 {REF} {Length: 1862} {Pfam: JmjC domain, hydroxylase [PF02373.24, score=80.0]; Cupin-like domain [PF13621.8, score=71.6]} {Human: ENSG00000070495, JMJD6, jumonji domain containing 6, arginine demethylase and lysine hydroxylase, [RH, Score=456, Expect=1e-159]} {Mouse: ENSMUSG00000056962, Jmjd6, jumonji domain containing 6, [RH, Score=450, Expect=2e-157]} {Dmel: FBgn0038948, PSR, phosphatidylserine receptor, [RH, Score=441, Expect=4e-154]} {Celegans: WBGene00004205, psr-1, Bifunctional arginine demethylase and lysyl-hydroxylase psr-1, [RH, Score=372, Expect=3e-127]} {Smed: dd_Smed_v6_5446_0_1, dd_Smed_v6_5446_0_1, [RH, Score=444, Expect=1e-155]} {RNA1509_11963} {RNA1310_22854, RNA1509_11963} {RNA1509_11963, RNA815_8433.1}
5. MligTC455_37549 88 1.83 Mlig455_048739

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-2.657

 0.977 - - - - 0.977 - Mlig455_048739 {REF} {Length: 1455} {TRANSSPLICED} {RNA1509_32517} {RNA1310_30798.1, RNA1509_32517} {RNA1509_32517, RNA815_17198}
6. MligTC455_54176 621 12.93 Mlig455_027812, Mlig455_060031

Neo: Germline

Age: Up-Down-Up, logFC(26M/2M)=0.510

Region-enriched R4: 3.051/0.01164

 0.976 - - - 0.976 - -

Mlig455_027812 {REF} {Length: 489} {Pfam: Ubiquitin family [PF00240.25, score=22.7]} {RNA1509_13902} {RNA1310_80266, RNA1509_13902} {RNA1509_13902, RNA815_36228}

Mlig455_060031 {REF} {Length: 473} {Pfam: Ubiquitin family [PF00240.25, score=22.7]} {RNA1509_13902} {RNA1310_80266} {RNA815_36228}
7. MligTC455_42813 43 0.89 Mlig455_003111

Neo: -

Age: -

 0.975 - - - 0.975 - - Mlig455_003111 {REF} {Length: 1922} {NoTransDecoderORF} {RNA1509_47921} {RNA1310_3669} {RNA815_8730.1}
8. MligTC455_16690 514 10.7 Mlig455_017270

Neo: Irradiation

Age: Up-Down-Down

Region-specific R4: 4.702

Region-enriched R4: 2.803/0.00034

 0.972 - - - 0.972 - - Mlig455_017270 {REF} {Length: 3362} {RNA1509_12608, RNA1509_34589, RNA1509_59322} {RNA1310_20003, RNA1509_12608, RNA1509_34589, RNA1509_59322} {RNA1509_12608, RNA1509_34589, RNA1509_59322, RNA815_17868.1}
9. MligTC455_39745 367 7.65 Mlig455_019269

Neo: -

Age: Down-Up-Down

 DUT 0.967 - - 0.967 - - - Mlig455_019269 {REF} {Length: 8301} {TRANSSPLICED} {Pfam: dUTPase [PF00692.21, score=88.1]} {Human: ENSG00000128951, DUT, deoxyuridine triphosphatase, [Score=85.1, Expect=1e-18]} {Mouse: ENSMUSG00000027203, Dut, deoxyuridine triphosphatase, [Score=83.2, Expect=6e-18]} {Celegans: WBGene00010609, dut-1, DeoxyUTPase; Deoxyuridinetriphosphatase, [Score=71.2, Expect=6e-13]} {Smed: dd_Smed_v6_2921_0_1, dd_Smed_v6_2921_0_1, [Score=77.0, Expect=1e-16]} {RNA1509_22708} {RNA1310_2613.1, RNA1509_22708} {RNA1509_22708, RNA815_19666}
10. MligTC455_15609 40 0.83 Mlig455_013993

Neo: Irradiation

Age: Up-Down-Down

Region-enriched R2: 5.195/0.04952

 0.966 - - - 0.966 - - Mlig455_013993 {REF} {Length: 2157} {Pfam: WSC domain [PF01822.21, score=49.2]; PAN domain [PF00024.28, score=28.8]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=48.1, Expect=3e-06]} {RNA1509_45592} {RNA1310_32706.1} {RNA815_19388}
11. MligTC455_35104 20 0.43 Mlig455_065442

Neo: -

Age: -

 YKT6 0.965 - - - 0.965 - - Mlig455_065442 {REF} {Length: 2294} {Pfam: Synaptobrevin [PF00957.23, score=53.9]; Regulated-SNARE-like domain [PF13774.8, score=47.4]} {Human: ENSG00000106636, YKT6, YKT6 v-SNARE homolog, [Score=197, Expect=3e-64]} {Mouse: ENSMUSG00000002741, Ykt6, YKT6 v-SNARE homolog (S. cerevisiae), [Score=197, Expect=3e-64]} {Dmel: FBgn0260858, Ykt6, YKT6 v-SNARE, [Score=192, Expect=2e-62]} {Celegans: WBGene00015164, ykt-6, YKT6 (Yeast v-SNARE) homolog, [RH, Score=183, Expect=9e-59]} {Smed: dd_Smed_v6_8028_0_1, dd_Smed_v6_8028_0_1, [Score=206, Expect=3e-68]} {RNA1310_36038} {RNA815_22722}
12. MligTC455_48708 20 0.42 Mlig455_067702

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.312

 SLC16A12 0.965 - - - - 0.965 - Mlig455_067702 {REF} {Length: 1799} {Pfam: Major Facilitator Superfamily [PF07690.18, score=92.0]} {Human: ENSG00000152779, SLC16A12, solute carrier family 16 member 12, [Score=115, Expect=2e-27]} {Mouse: ENSMUSG00000009378, Slc16a12, solute carrier family 16 (monocarboxylic acid transporters), member 12, [Score=116, Expect=7e-28]} {Dmel: FBgn0033657, Sln, Silnoon, [Score=103, Expect=3e-23]} {Celegans: WBGene00015676, mct-6, MonoCarboxylate Transporter family, [Score=68.6, Expect=3e-12]} {Smed: dd_Smed_v6_27363_0_1, dd_Smed_v6_27363_0_1, [Score=53.1, Expect=1e-07]} {RNA1509_51838} {RNA1310_16175} {RNA815_10056}
13. MligTC455_15647 55 1.14 Mlig455_030460

Neo: -

Age: -

 0.962 - - - 0.962 - - Mlig455_030460 {REF} {Length: 3324} {Smed: dd_Smed_v6_12269_0_1, dd_Smed_v6_12269_0_1, [RH, Score=61.2, Expect=5e-10]} {RNA1509_50317} {RNA1310_26677} {RNA815_35533}
14. MligTC455_14375 163 3.4 Mlig455_056945

Neo: -

Age: -

 0.96 - - 0.960 - - - Mlig455_056945 {REF} {Length: 1764} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=49.6]} {Smed: dd_Smed_v6_32358_0_1, dd_Smed_v6_32358_0_1, [Score=94.4, Expect=4e-22]} {RNA1509_48719} {RNA1310_16266.1} {RNA815_10544.2}
15. MligTC455_54094 732 15.26 Mlig455_041411, Mlig455_060897

Neo: -

Age: Down-Up-Up

 MTHFR 0.959 - - 0.959 - - -

Mlig455_041411 {REF} {Length: 3348} {Pfam: Methylenetetrahydrofolate reductase [PF02219.19, score=347.8]} {Human: ENSG00000177000, MTHFR, methylenetetrahydrofolate reductase, [RH, Score=732, Expect=0.0]} {Mouse: ENSMUSG00000029009, Mthfr, methylenetetrahydrofolate reductase, [RH, Score=725, Expect=0.0]} {Dmel: FBgn0036157, CG7560, [RH, Score=93.6, Expect=3e-20]} {Celegans: WBGene00015512, mthf-1, Probable methylenetetrahydrofolate reductase, [RH, Score=609, Expect=0.0]} {Smed: dd_Smed_v6_8918_0_1, dd_Smed_v6_8918_0_1, [RH, Score=736, Expect=0.0]} {RNA1509_15714, RNA1509_4443} {RNA1310_9841, RNA1509_15714, RNA1509_4443} {RNA1509_15714, RNA1509_4443, RNA815_1838.1}

Mlig455_060897 {REF} {Length: 3252} {TRANSSPLICED} {Pfam: Methylenetetrahydrofolate reductase [PF02219.19, score=348.4]} {Human: ENSG00000177000, MTHFR, methylenetetrahydrofolate reductase, [RH, Score=734, Expect=0.0]} {Mouse: ENSMUSG00000029009, Mthfr, methylenetetrahydrofolate reductase, [RH, Score=727, Expect=0.0]} {Dmel: FBgn0036157, CG7560, [RH, Score=93.6, Expect=3e-20]} {Celegans: WBGene00015512, mthf-1, Probable methylenetetrahydrofolate reductase, [RH, Score=611, Expect=0.0]} {Smed: dd_Smed_v6_8918_0_1, dd_Smed_v6_8918_0_1, [RH, Score=738, Expect=0.0]} {RNA1509_4443} {RNA1310_9841} {RNA815_1838.1}
16. MligTC455_17961 63 1.32 Mlig455_021046, Mlig455_021081

Neo: -

Age: Down-Up-Down

 0.957 - - - - 0.957 -

Mlig455_021046 {REF} {Length: 2175} {Pfam: Family of unknown function (DUF5856) [PF19174.2, score=20.6]} {RNA1310_45857} {RNA815_23318}

Mlig455_021081 {REF} {Length: 2733} {Pfam: SH3 domain [PF17902.3, score=26.9]; Plectin repeat [PF00681.22, score=22.8]; Occludin homology domain [PF07303.15, score=22.8]} {Smed: dd_Smed_v6_16329_0_1, dd_Smed_v6_16329_0_1, [Score=56.6, Expect=3e-08]} {RNA1509_53557} {RNA1310_11053.2} {RNA815_24024.1}
17. MligTC455_18107 112 2.33 Mlig455_067898

Neo: -

Age: -

Region-enriched R2: 4.389/0.00558

 C7orf31 0.956 - - - - - 0.956 Mlig455_067898 {REF} {Length: 3011} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4555) [PF15093.8, score=96.1]} {Human: ENSG00000153790, C7orf31, chromosome 7 open reading frame 31, [RH, Score=114, Expect=1e-25]} {Mouse: ENSMUSG00000029828, 4921507P07Rik, RIKEN cDNA 4921507P07 gene, [RH, Score=107, Expect=8e-24]} {RNA1509_34630} {RNA1310_4450, RNA1509_34630} {RNA1509_34630, RNA815_12248}
18. MligTC455_48062 71 1.47 Mlig455_058460

Neo: -

Age: -

 0.954 - - - - - 0.954 Mlig455_058460 {REF} {Length: 976} {RNA1509_42285} {RNA1310_38575}
19. MligTC455_43196 165 3.43 Mlig455_010052

Neo: -

Age: -

 0.953 - - 0.953 - - - Mlig455_010052 {REF} {Length: 1099} {Pfam: Cystatin domain [PF00031.23, score=38.2]} {Mouse: ENSMUSG00000022875, Kng1, kininogen 1, [RH, Score=49.7, Expect=2e-07]; ENSMUSG00000060459, Kng2, kininogen 2, [RH, Score=48.9, Expect=4e-07]} {RNA1509_6502} {RNA1310_46333} {RNA815_25269}
20. MligTC455_53796 139 2.89 Mlig455_043491

Neo: -

Age: -

 0.953 - - 0.953 - - - Mlig455_043491 {REF} {Length: 544} {RNA1310_29537.1}
21. MligTC455_08280 305 6.35 Mlig455_050545, Mlig455_050577

Neo: -

Age: -

 0.952 - - 0.952 - - -

Mlig455_050545 {REF} {Length: 796} {TRANSSPLICED} {RNA1509_43316} {RNA1310_54816, RNA1509_43316} {RNA1509_43316, RNA815_27707}

Mlig455_050577 {REF} {Length: 552} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_43316} {RNA1310_54816} {RNA815_27707}
22. MligTC455_23046 38 0.8 Mlig455_070735

Neo: -

Age: -

 0.952 - - 0.952 - - - Mlig455_070735 {REF} {Length: 573} {NoTransDecoderORF} {RNA1310_101740}
23. MligTC455_23048 39 0.81 Mlig455_057935, Mlig455_070733

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.543

 SGSM1 0.952 - - 0.952 - - -

Mlig455_057935 {REF} {Length: 4312} {Pfam: Rab-GTPase-TBC domain [PF00566.20, score=82.6]; RUN domain [PF02759.21, score=76.3]; Rab-binding domain (RBD) [PF12068.10, score=76.0]} {Human: ENSG00000167037, SGSM1, small G protein signaling modulator 1, [RH, Score=372, Expect=6e-110]} {Mouse: ENSMUSG00000042216, Sgsm1, small G protein signaling modulator 1, [RH, Score=369, Expect=4e-113]} {Dmel: FBgn0031116, CG1695, [Score=383, Expect=8e-114]} {Celegans: WBGene00008018, tbc-8, TBC (Tre-2/Bub2/Cdc16) domain family, [Score=221, Expect=2e-59]} {Smed: dd_Smed_v6_12130_0_1, dd_Smed_v6_12130_0_1, [Score=479, Expect=3e-150]} {RNA1310_35495.2} {RNA815_26008}

Mlig455_070733 {REF} {Length: 1948} {Pfam: Rab-binding domain (RBD) [PF12068.10, score=56.3]} {Human: ENSG00000167037, SGSM1, small G protein signaling modulator 1, [Score=204, Expect=7e-55]} {Mouse: ENSMUSG00000042216, Sgsm1, small G protein signaling modulator 1, [Score=201, Expect=1e-55]} {Dmel: FBgn0031116, CG1695, [Score=200, Expect=5e-54]} {Celegans: WBGene00008018, tbc-8, TBC (Tre-2/Bub2/Cdc16) domain family, [Score=115, Expect=2e-26]} {Smed: dd_Smed_v6_3307_0_1, dd_Smed_v6_3307_0_1, [Score=188, Expect=3e-50]} {RNA1310_49577} {RNA815_26008}
24. MligTC455_28201 266 5.55 Mlig455_061975

Neo: -

Age: -

 0.952 - - - - - 0.952 Mlig455_061975 {REF} {Length: 4967} {RNA1509_30620} {RNA1310_13656} {RNA815_8222.1}
25. MligTC455_51305 927 19.32 Mlig455_003406

Neo: -

Age: -

 0.952 - - 0.952 - - - Mlig455_003406 {REF} {Length: 2055} {Pfam: Minichromosome loss protein, Mcl1, middle region [PF12341.10, score=20.5]} {RNA1509_26404} {RNA1310_41259} {RNA815_16346.1}
26. MligTC455_04274 93 1.94 Mlig455_016312

Neo: -

Age: -

 0.951 - - - - - 0.951 Mlig455_016312 {REF} {Length: 2266} {Pfam: Domain of unknown function (DUF4806) [PF16064.7, score=33.7]} {RNA1509_7158} {RNA1310_4079} {RNA815_282.1}
27. MligTC455_33835 35 0.74 Mlig455_036756

Neo: -

Age: Down-Up-Down

 CYP2J2 0.951 - - - - 0.951 - Mlig455_036756 {REF} {Length: 2179} {Pfam: Cytochrome P450 [PF00067.24, score=371.7]} {Human: ENSG00000134716, CYP2J2, cytochrome P450 family 2 subfamily J member 2, [Score=259, Expect=4e-79]} {Mouse: ENSMUSG00000081225, Cyp2j12, cytochrome P450, family 2, subfamily j, polypeptide 12, [Score=263, Expect=8e-81]; ENSMUSG00000052914, Cyp2j6, cytochrome P450, family 2, subfamily j, polypeptide 6, [Score=259, Expect=3e-79]; ENSMUSG00000081362, Cyp2j7, cytochrome P450, family 2, subfamily j, polypeptide 7, [Score=256, Expect=2e-78]} {Dmel: FBgn0036910, Cyp305a1, [RH, Score=205, Expect=3e-59]} {Celegans: WBGene00007913, cyp-36A1, Probable cytochrome P450 CYP36A1, [RH, Score=223, Expect=3e-66]} {Smed: dd_Smed_v6_5344_0_2, dd_Smed_v6_5344_0_2, [RH, Score=264, Expect=2e-81]} {RNA1509_32471} {RNA1310_10330} {RNA815_3898.1}
28. MligTC455_42448 849 17.69 Mlig455_031562

Neo: -

Age: -

 0.95 - - 0.950 - - - Mlig455_031562 {REF} {Length: 2282} {RNA1509_30650} {RNA1310_36875.1} {RNA815_12020}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA