Data search
Results for MligTC455_47028
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_47028 | 572 | 11.91 | Mlig455_061142 | Neo: - Age: - |
DHDDS | Mlig455_061142 {REF} {Length: 1426} {TRANSSPLICED} {Pfam: Putative undecaprenyl diphosphate synthase [PF01255.21, score=239.9]} {Human: ENSG00000117682, DHDDS, dehydrodolichyl diphosphate synthase subunit, [RH, Score=282, Expect=2e-93]} {Mouse: ENSMUSG00000012117, Dhdds, dehydrodolichyl diphosphate synthase, [RH, Score=281, Expect=5e-93]} {Dmel: FBgn0029980, CG10778, [RH, Score=250, Expect=2e-81]} {Celegans: WBGene00044025, T01G1.4, Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyl diphosphate specific), [RH, Score=221, Expect=2e-70]} {Smed: dd_Smed_v6_6603_0_1, dd_Smed_v6_6603_0_1, [RH, Score=273, Expect=1e-90]} {RNA1509_4999} {RNA1310_27885} {RNA815_2608.1} |
Cumulative graph for MligTC455_47028
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | 0.87 | 3.777 | 0.44010 | 1.00000 | |
| RegionR2 | -1.044 | 3.777 | 0.04774 | 0.25927 | |
| RegionR3 | -0.636 | 3.777 | 0.14566 | 0.64949 | |
| RegionR4 | 0.355 | 3.777 | 0.48682 | 0.81441 | |
| RegionR5 | 0.965 | 3.777 | 0.00704 | 0.04475 | |
| RegionR6 | -0.1 | 3.777 | 0.81605 | 1.00000 | |
| RegionR7 | -0.05 | 3.777 | 0.93152 | 1.00000 | |
| RegionR8 | -0.36 | 3.777 | 0.63771 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -1.483 | 3.777 | 0.37295 | 1.00000 | |
| RegenerationR2 | 0.648 | 3.777 | 0.14093 | 0.57056 | |
| RegenerationR3 | 0.77 | 3.777 | 0.11464 | 0.52855 | |
| RegenerationR4 | 0.569 | 3.777 | 0.24020 | 0.68881 | |
| RegenerationR5 | 0.058 | 3.777 | 0.89163 | 1.00000 | |
| RegenerationR6 | 0.439 | 3.777 | 0.35584 | 0.70080 | |
| RegenerationBL | 0.211 | 3.777 | 0.71399 | 1.00000 | |
| RegenerationTP | -0.684 | 3.777 | 0.33811 | 0.78180 |
Genes with expression patterns similar to MligTC455_47028
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_47028 | 572 | 11.91 | Mlig455_061142 | Neo: - Age: - |
DHDDS | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_061142 {REF} {Length: 1426} {TRANSSPLICED} {Pfam: Putative undecaprenyl diphosphate synthase [PF01255.21, score=239.9]} {Human: ENSG00000117682, DHDDS, dehydrodolichyl diphosphate synthase subunit, [RH, Score=282, Expect=2e-93]} {Mouse: ENSMUSG00000012117, Dhdds, dehydrodolichyl diphosphate synthase, [RH, Score=281, Expect=5e-93]} {Dmel: FBgn0029980, CG10778, [RH, Score=250, Expect=2e-81]} {Celegans: WBGene00044025, T01G1.4, Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyl diphosphate specific), [RH, Score=221, Expect=2e-70]} {Smed: dd_Smed_v6_6603_0_1, dd_Smed_v6_6603_0_1, [RH, Score=273, Expect=1e-90]} {RNA1509_4999} {RNA1310_27885} {RNA815_2608.1} |
| 2. | MligTC455_31129 | 1008 | 21 | Mlig455_005615, Mlig455_070184 | Neo: Irradiation Age: logFC(26M/2M)=0.545 Region-specific R5: 1.527 Region-enriched R5: 1.021/0.00725 |
LIG4 | 1.82 | - | 0.848 | - | - | 0.972 | - | Mlig455_005615 {REF} {Length: 3975} {Pfam: ATP dependent DNA ligase domain [PF01068.23, score=124.6]; DNA ligase N terminus [PF04675.16, score=70.9]; ATP dependent DNA ligase C terminal region [PF04679.17, score=58.5]; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family [PF01248.28, score=57.1]; BRCT domain, a BRCA1 C-terminus domain [PF16589.7, score=42.4]; RNA ligase [PF09414.12, score=29.0]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=28.6]} {Human: ENSG00000174405, LIG4, DNA ligase 4, [Score=546, Expect=2e-178]} {Mouse: ENSMUSG00000049717, Lig4, ligase IV, DNA, ATP-dependent, [Score=541, Expect=7e-177]} {Dmel: FBgn0030506, Lig4, Ligase4, [Score=214, Expect=4e-57]} {Celegans: WBGene00002986, lig-4, LIGase, [RH, Score=127, Expect=1e-29]} {Smed: dd_Smed_v6_11363_0_1, dd_Smed_v6_11363_0_1, [Score=504, Expect=6e-163]} {RNA1509_4940} {RNA1310_2815} {RNA815_3459} Mlig455_070184 {REF} {Length: 3787} {TRANSSPLICED} {Pfam: ATP dependent DNA ligase domain [PF01068.23, score=124.6]; DNA ligase N terminus [PF04675.16, score=120.6]; ATP dependent DNA ligase C terminal region [PF04679.17, score=58.3]; BRCT domain, a BRCA1 C-terminus domain [PF16589.7, score=42.6]; RNA ligase [PF09414.12, score=29.1]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=28.1]} {Human: ENSG00000174405, LIG4, DNA ligase 4, [RH, Score=648, Expect=0.0]} {Mouse: ENSMUSG00000049717, Lig4, ligase IV, DNA, ATP-dependent, [RH, Score=643, Expect=0.0]} {Dmel: FBgn0030506, Lig4, Ligase4, [RH, Score=253, Expect=3e-70]} {Celegans: WBGene00002985, lig-1, DNA ligase 1, [Score=134, Expect=7e-32]} {Smed: dd_Smed_v6_11363_0_1, dd_Smed_v6_11363_0_1, [RH, Score=566, Expect=0.0]} {RNA1509_4940} {RNA1310_2815, RNA1509_4940} {RNA1509_4940, RNA815_3459} |
| 3. | MligTC455_52116 | 1099 | 22.9 | Mlig455_056371 | Neo: - Age: Down-Up-Up Region-enriched R5: 1.213/0.01277 |
SDE2 | 1.799 | - | - | - | 0.838 | 0.961 | - | Mlig455_056371 {REF} {Length: 1424} {TRANSSPLICED} {Pfam: Silencing defective 2 N-terminal ubiquitin domain [PF13019.8, score=79.6]; Replication stress response SDE2 C-terminal [PF13297.8, score=71.6]; Cornifin (SPRR) family [PF02389.17, score=24.0]} {Human: ENSG00000143751, SDE2, SDE2 telomere maintenance homolog, [RH, Score=124, Expect=5e-31]} {Mouse: ENSMUSG00000038806, Sde2, SDE2 telomere maintenance homolog (S. pombe), [RH, Score=158, Expect=1e-43]} {Dmel: FBgn0043455, CG5986, [RH, Score=84.7, Expect=1e-18]} {Celegans: WBGene00009996, F53F4.14, [RH, Score=79.7, Expect=5e-16]} {Smed: dd_Smed_v6_5448_0_1, dd_Smed_v6_5448_0_1, [RH, Score=155, Expect=5e-44]} {RNA1509_10307, RNA1509_43561, RNA1509_48494} {RNA1310_25308.1, RNA1509_10307, RNA1509_43561, RNA1509_48494} {RNA1509_10307, RNA1509_43561, RNA1509_48494, RNA815_15881} |
| 4. | MligTC455_52606 | 1274 | 26.54 | Mlig455_031455 | Neo: - Age: - |
0.967 | - | - | - | 0.967 | - | - | Mlig455_031455 {REF} {Length: 2311} {TRANSSPLICED} {RNA1509_18573, RNA1509_19488, RNA1509_26061, RNA1509_43369, RNA1509_57901} {RNA1310_18276, RNA1509_18573, RNA1509_19488, RNA1509_26061, RNA1509_43369, RNA1509_57901} {RNA1509_18573, RNA1509_19488, RNA1509_26061, RNA1509_43369, RNA1509_57901, RNA815_9162.1} | |
| 5. | MligTC455_19744 | 891 | 18.57 | Mlig455_007245, Mlig455_007467 | Neo: Int S/G2/M Age: - Region-enriched R5: 1.558/0.00578 |
0.961 | - | - | - | - | 0.961 | - | Mlig455_007245 {REF} {Length: 3365} {TRANSSPLICED} {Dmel: FBgn0025830, IntS8, Integrator 8, [RH, Score=90.5, Expect=4e-18]} {Smed: dd_Smed_v6_9504_0_1, dd_Smed_v6_9504_0_1, [RH, Score=135, Expect=5e-32]} {RNA1509_8894} {RNA1310_3976.1} {RNA815_15572} Mlig455_007467 {REF} {Length: 3370} {TRANSSPLICED} {Dmel: FBgn0025830, IntS8, Integrator 8, [RH, Score=90.1, Expect=7e-18]} {Smed: dd_Smed_v6_9504_0_1, dd_Smed_v6_9504_0_1, [RH, Score=134, Expect=6e-32]} {RNA1509_8894} {RNA1310_3976.1, RNA1509_8894} {RNA1509_8894, RNA815_15572} |
|
| 6. | MligTC455_21076 | 336 | 7 | Mlig455_051633 | Neo: Int S/G2/M Age: - Region-enriched R4: 2.026/0.02685 |
0.957 | - | - | - | - | - | 0.957 | Mlig455_051633 {REF} {Length: 1096} {TRANSSPLICED} {Pfam: Elongator subunit Iki1 [PF10483.11, score=28.3]} {RNA1509_31160, RNA1509_45434} {RNA1310_30401, RNA1509_31160, RNA1509_45434} {RNA1509_31160, RNA1509_45434, RNA815_14488} | |
| 7. | MligTC455_46411 | 1598 | 33.3 | Mlig455_031090, Mlig455_031125 | Neo: Int S/G2/M Age: - |
RFC1 | 0.954 | - | - | - | - | 0.954 | - | Mlig455_031090 {REF} {Length: 3760} {TRANSSPLICED} {Pfam: Replication factor RFC1 C terminal domain [PF08519.14, score=147.7]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=47.3]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=34.2]; twin BRCT domain [PF12738.9, score=20.1]} {Human: ENSG00000035928, RFC1, replication factor C subunit 1, [Score=545, Expect=2e-174]} {Mouse: ENSMUSG00000029191, Rfc1, replication factor C (activator 1) 1, [Score=551, Expect=9e-177]} {Dmel: FBgn0004913, Gnf1, Germ line transcription factor 1, [Score=518, Expect=4e-166]} {Celegans: WBGene00004337, rfc-1, RFC (DNA replication factor) family, [RH, Score=440, Expect=2e-138]} {Smed: dd_Smed_v6_11546_0_1, dd_Smed_v6_11546_0_1, [Score=395, Expect=8e-121]} {RNA1509_32943} {RNA1310_3700} {RNA815_3470} Mlig455_031125 {REF} {Length: 3479} {TRANSSPLICED} {Pfam: Replication factor RFC1 C terminal domain [PF08519.14, score=148.5]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=47.5]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=34.4]; twin BRCT domain [PF12738.9, score=20.3]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=18.4]} {Human: ENSG00000035928, RFC1, replication factor C subunit 1, [RH, Score=607, Expect=0.0]} {Mouse: ENSMUSG00000029191, Rfc1, replication factor C (activator 1) 1, [RH, Score=620, Expect=0.0]} {Dmel: FBgn0004913, Gnf1, Germ line transcription factor 1, [Score=558, Expect=0.0]} {Celegans: WBGene00004337, rfc-1, RFC (DNA replication factor) family, [RH, Score=437, Expect=4e-138]} {Smed: dd_Smed_v6_11546_0_1, dd_Smed_v6_11546_0_1, [RH, Score=454, Expect=1e-143]} {RNA1509_22129} {RNA1310_3700} {RNA815_3470} |
| 8. | MligTC455_23989 | 1060 | 22.09 | Mlig455_040688, Mlig455_064558 | Neo: Int S/G2/M Age: - |
WEE2 | 0.953 | - | - | - | - | 0.953 | - | Mlig455_040688 {REF} {Length: 2318} {Pfam: Protein kinase domain [PF00069.27, score=106.0]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=79.2]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=22.9]} {Human: ENSG00000214102, WEE2, WEE1 homolog 2, [Score=106, Expect=1e-23]; ENSG00000263042, WEE2, WEE1 homolog 2, [Score=106, Expect=1e-23]} {Mouse: ENSMUSG00000037159, Wee2, WEE1 homolog 2 (S. pombe), [Score=111, Expect=2e-25]} {Dmel: FBgn0011737, Wee1, Wee1 kinase, [RH, Score=114, Expect=1e-26]} {Celegans: WBGene00003916, par-1, Serine/threonine-protein kinase par-1, [Score=72.0, Expect=6e-13]} {Smed: dd_Smed_v6_17244_0_1, dd_Smed_v6_17244_0_1, [RH, Score=95.9, Expect=6e-21]} {RNA1509_34481} {RNA1310_10526} {RNA815_4229.1} Mlig455_064558 {REF} {Length: 2345} {Pfam: Protein kinase domain [PF00069.27, score=105.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=79.2]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=22.8]} {Human: ENSG00000263042, WEE2, WEE1 homolog 2, [Score=106, Expect=1e-23]; ENSG00000214102, WEE2, WEE1 homolog 2, [Score=106, Expect=1e-23]} {Mouse: ENSMUSG00000037159, Wee2, WEE1 homolog 2 (S. pombe), [Score=111, Expect=2e-25]} {Dmel: FBgn0011737, Wee1, Wee1 kinase, [RH, Score=114, Expect=1e-26]} {Celegans: WBGene00003916, par-1, Serine/threonine-protein kinase par-1, [Score=72.8, Expect=4e-13]} {Smed: dd_Smed_v6_17244_0_1, dd_Smed_v6_17244_0_1, [RH, Score=95.9, Expect=6e-21]} {RNA1509_34481} {RNA1310_10526, RNA1509_34481} {RNA1509_34481, RNA815_4229.1} |
| 9. | MligTC455_51694 | 477 | 9.94 | Mlig455_042379 | Neo: - |
0.953 | - | - | - | 0.953 | - | - | Mlig455_042379 {REF} {Length: 484} {RNA1509_54355} {RNA1310_76708, RNA1509_54355} {RNA1509_54355, RNA815_43478} | |
| 10. | MligTC455_29376 | 74 | 1.54 | Mlig455_005795 | Neo: - Age: Down-Down-Down |
0.952 | - | - | - | 0.952 | - | - | Mlig455_005795 {REF} {Length: 8723} {RNA1509_34218} {RNA1310_18727} {RNA815_16176.1} | |
| 11. | MligTC455_31128 | 677 | 14.09 | Mlig455_014434, Mlig455_014442 | Neo: - Age: Down-Down-Up |
LIG4 | 0.95 | - | - | - | - | 0.950 | - | Mlig455_014434 {REF} {Length: 3798} {TRANSSPLICED} {Pfam: ATP dependent DNA ligase domain [PF01068.23, score=124.6]; DNA ligase N terminus [PF04675.16, score=120.6]; ATP dependent DNA ligase C terminal region [PF04679.17, score=58.3]; BRCT domain, a BRCA1 C-terminus domain [PF16589.7, score=42.6]; RNA ligase [PF09414.12, score=29.1]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=28.1]} {Human: ENSG00000174405, LIG4, DNA ligase 4, [RH, Score=648, Expect=0.0]} {Mouse: ENSMUSG00000049717, Lig4, ligase IV, DNA, ATP-dependent, [RH, Score=643, Expect=0.0]} {Dmel: FBgn0030506, Lig4, Ligase4, [RH, Score=252, Expect=3e-70]} {Celegans: WBGene00002985, lig-1, DNA ligase 1, [Score=133, Expect=8e-32]} {Smed: dd_Smed_v6_11363_0_1, dd_Smed_v6_11363_0_1, [RH, Score=568, Expect=0.0]} {RNA1509_4940} {RNA1310_2815} {RNA815_3459} Mlig455_014442 {REF} {Length: 3787} {TRANSSPLICED} {Pfam: ATP dependent DNA ligase domain [PF01068.23, score=124.7]; DNA ligase N terminus [PF04675.16, score=120.6]; ATP dependent DNA ligase C terminal region [PF04679.17, score=58.3]; BRCT domain, a BRCA1 C-terminus domain [PF16589.7, score=42.5]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=28.1]; RNA ligase [PF09414.12, score=27.4]} {Human: ENSG00000174405, LIG4, DNA ligase 4, [RH, Score=649, Expect=0.0]} {Mouse: ENSMUSG00000049717, Lig4, ligase IV, DNA, ATP-dependent, [RH, Score=641, Expect=0.0]} {Dmel: FBgn0030506, Lig4, Ligase4, [RH, Score=253, Expect=2e-70]} {Celegans: WBGene00002985, lig-1, DNA ligase 1, [Score=134, Expect=5e-32]} {Smed: dd_Smed_v6_11363_0_1, dd_Smed_v6_11363_0_1, [RH, Score=570, Expect=0.0]} {RNA1509_4940} {RNA1310_2815} {RNA815_3459} |