TomoSeq data search

Data search

Results for MligTC455_47253

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_47253

1361

28.36

Mlig455_068509

Neo: -

Age: Down-Up-Down

Region-enriched R6: 3.710/0.00000
Region-enriched R7: 3.516/0.00000
Region-enriched R8: 2.642/0.02845
Region-enriched R5: 2.104/0.00217

Regeneration-upregulated R4: 2.230

Regeneration-enriched R4: 2.230

Mlig455_068509 {REF} {Length: 1557} {Pfam: Tumor necrosis factor receptor member 16 trans-membrane domain [PF18422.3, score=29.9]; Death domain [PF00531.24, score=24.7]} {RNA1509_20208} {RNA1310_25908} {RNA815_31281}

Cumulative graph for MligTC455_47253

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-6.301	4.945	0.09292	0.65294
RegionR2	-3.126	4.945	1.00000	1.00000
RegionR3	-2.107	4.945	0.99945	1.00000
RegionR4	-0.438	4.945	0.94543	1.00000
RegionR5	2.104	4.945	0.00014	0.00217
RegionR6	3.71	4.945	0.00000	0.00000
RegionR7	3.516	4.945	0.00000	0.00000
RegionR8	2.642	4.945	0.00051	0.02845

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	7.85	4.945	0.01426	0.50457
RegenerationR2	1.671	4.945	0.02177	0.24275
RegenerationR3	1.96	4.945	0.00516	0.12922
RegenerationR4	2.23	4.945	0.00005	0.00393	Specific for R4: 2.230
RegenerationR5	1.516	4.945	0.00081	0.04725
RegenerationR6	0.626	4.945	0.16767	0.49828
RegenerationBL	0.718	4.945	0.09569	0.36301
RegenerationTP	-0.406	4.945	0.43346	0.85562

Genes with expression patterns similar to MligTC455_47253

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_47253	1361	28.36	Mlig455_068509	Neo: - Age: Down-Up-Down Region-enriched R6: 3.710/0.00000 Region-enriched R7: 3.516/0.00000 Region-enriched R8: 2.642/0.02845 Region-enriched R5: 2.104/0.00217 Regeneration-upregulated R4: 2.230 Regeneration-enriched R4: 2.230		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_068509 {REF} {Length: 1557} {Pfam: Tumor necrosis factor receptor member 16 trans-membrane domain [PF18422.3, score=29.9]; Death domain [PF00531.24, score=24.7]} {RNA1509_20208} {RNA1310_25908} {RNA815_31281}
2.	MligTC455_47252	744	15.5	Mlig455_053833	Neo: - Age: Down-Down-Up, logFC(26M/2M)=-0.936 Region-enriched R6: 3.522/0.00000 Region-enriched R5: 1.978/0.04039		4.621	0.825	-	0.956	0.949	0.914	0.977	Mlig455_053833 {REF} {Length: 1601} {Pfam: Tumor necrosis factor receptor member 16 trans-membrane domain [PF18422.3, score=30.0]; Death domain [PF00531.24, score=24.7]} {RNA1509_20208} {RNA1310_25908, RNA1509_20208} {RNA1509_20208, RNA815_31281}
3.	MligTC455_33670	694	14.46	Mlig455_030345	Neo: - Age: Down-Up-Down, logFC(26M/2M)=0.388 Region-enriched R8: 2.303/0.01396 Region-enriched R6: 2.281/0.00010	TSHZ2	4.419	0.844	-	0.937	0.883	0.783	0.972	Mlig455_030345 {REF} {Length: 3290} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=27.0]; C2H2 type zinc-finger (2 copies) [PF12756.9, score=21.9]; C2H2-type zinc finger [PF13894.8, score=21.0]} {Human: ENSG00000182463, TSHZ2, teashirt zinc finger homeobox 2, [RH, Score=61.6, Expect=5e-09]; ENSG00000179981, TSHZ1, teashirt zinc finger homeobox 1, [RH, Score=60.1, Expect=1e-08]} {Mouse: ENSMUSG00000047907, Tshz2, teashirt zinc finger family member 2, [RH, Score=61.6, Expect=3e-09]; ENSMUSG00000046982, Tshz1, teashirt zinc finger family member 1, [RH, Score=60.1, Expect=1e-08]} {Dmel: FBgn0028979, tio, tiptop, [RH, Score=82.8, Expect=7e-16]} {Smed: dd_Smed_v6_9287_0_1, dd_Smed_v6_9287_0_1, [Score=145, Expect=1e-35]} {RNA1509_10243} {RNA1310_2080.1} {RNA815_22024.1}
4.	MligTC455_33671	682	14.21	Mlig455_034054	Neo: - Age: logFC(26M/2M)=-0.374 Region-enriched R6: 2.249/0.00024 Region-enriched R8: 2.195/0.02550	TSHZ1	4.339	0.838	-	0.942	0.834	0.745	0.980	Mlig455_034054 {REF} {Length: 5237} {Pfam: C2H2 type zinc-finger (2 copies) [PF12756.9, score=23.2]; C2HE / C2H2 / C2HC zinc-binding finger [PF16278.7, score=19.7]} {Human: ENSG00000179981, TSHZ1, teashirt zinc finger homeobox 1, [RH, Score=62.4, Expect=2e-10]; ENSG00000121297, TSHZ3, teashirt zinc finger homeobox 3, [RH, Score=59.3, Expect=2e-09]} {Mouse: ENSMUSG00000046982, Tshz1, teashirt zinc finger family member 1, [RH, Score=62.4, Expect=1e-10]; ENSMUSG00000021217, Tshz3, teashirt zinc finger family member 3, [RH, Score=59.3, Expect=1e-09]} {Dmel: FBgn0028979, tio, tiptop, [Score=73.2, Expect=2e-14]} {Smed: dd_Smed_v6_9287_0_1, dd_Smed_v6_9287_0_1, [Score=104, Expect=3e-25]} {RNA1509_10243, RNA1509_59563} {RNA1310_4939, RNA1509_59563} {RNA1509_59563, RNA815_4950}
5.	MligTC455_38991	838	17.45	Mlig455_050452	Neo: - Age: Up-Down-Down Region-enriched R6: 1.607/0.00252		2.523	-	-	0.796	0.767	0.960	-	Mlig455_050452 {REF} {Length: 3133} {Pfam: Aminotransferase class-V [PF00266.21, score=51.3]} {Smed: dd_Smed_v6_6547_0_1, dd_Smed_v6_6547_0_1, [RH, Score=202, Expect=8e-61]} {RNA1509_19354} {RNA1310_15282, RNA1509_19354} {RNA1509_19354, RNA815_6721.1}
6.	MligTC455_21566	120	2.51	Mlig455_059038, Mlig455_070844	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.901	GIMAP7	0.953	-	-	-	0.953	-	-	Mlig455_059038 {REF} {Length: 1740} {Pfam: AIG1 family [PF04548.18, score=133.6]; 50S ribosome-binding GTPase [PF01926.25, score=34.0]; Dynamin family [PF00350.25, score=24.4]; Septin [PF00735.20, score=22.0]; ABC transporter [PF00005.29, score=21.4]; Ferrous iron transport protein B [PF02421.20, score=18.3]} {Human: ENSG00000179144, GIMAP7, GTPase, IMAP family member 7, [Score=88.2, Expect=2e-19]} {Mouse: ENSMUSG00000043931, Gimap7, GTPase, IMAP family member 7, [RH, Score=94.4, Expect=9e-22]} {RNA1509_14293} {RNA1310_21879.1} {RNA815_8194.1} Mlig455_070844 {REF} {Length: 1755} {Pfam: AIG1 family [PF04548.18, score=138.3]; 50S ribosome-binding GTPase [PF01926.25, score=35.2]; Dynamin family [PF00350.25, score=24.9]; Septin [PF00735.20, score=20.5]} {Human: ENSG00000179144, GIMAP7, GTPase, IMAP family member 7, [Score=92.8, Expect=6e-21]} {Mouse: ENSMUSG00000043931, Gimap7, GTPase, IMAP family member 7, [RH, Score=99.4, Expect=2e-23]} {RNA1509_14293} {RNA1310_21879.1} {RNA815_8194.1}

Berezikov Lab - 2020-2021 © ERIBA