M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_47454

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_47454 117 2.43 Mlig455_064549

Neo: -

Age: -

 Mlig455_064549 {REF} {Length: 455} {NoTransDecoderORF} {RNA1310_142186}

Cumulative graph for MligTC455_47454

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.972 2.115 0.61155 1.00000
RegionR2 0.935 2.115 0.53195 0.90318
RegionR3 0.511 2.115 0.68152 1.00000
RegionR4 1.117 2.115 0.41710 0.74458
RegionR5 0.367 2.115 0.71586 1.00000
RegionR6 -1.472 2.115 0.99753 1.00000
RegionR7 0.878 2.115 0.57343 1.00000
RegionR8 0.637 2.115 0.73324 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.264 2.115 0.99990 1.00000
RegenerationR2 0.002 2.115 0.99351 1.00000
RegenerationR3 0.76 2.115 0.52346 0.86856
RegenerationR4 1.249 2.115 0.26949 0.71611
RegenerationR5 1.417 2.115 0.20913 0.64274
RegenerationR6 3.442 2.115 0.01321 0.14187
RegenerationBL -1.268 2.115 0.50661 0.87021
RegenerationTP 1.486 2.115 0.29808 0.74353


Genes with expression patterns similar to MligTC455_47454

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_47454 117 2.43 Mlig455_064549

Neo: -

Age: -

 5 1.000 - 1.000 1.000 1.000 1.000 Mlig455_064549 {REF} {Length: 455} {NoTransDecoderORF} {RNA1310_142186}
2. MligTC455_47453 37 0.78 Mlig455_064072

Neo: -

Age: -

 1.857 0.982 - - - 0.875 - Mlig455_064072 {REF} {Length: 259} {NoTransDecoderORF} {RNA1310_142186}
3. MligTC455_17714 813 16.95 Mlig455_065255

Neo: -

Age: Down-Up-Up

 0.968 - - - - 0.968 - Mlig455_065255 {REF} {Length: 535} {TRANSSPLICED} {RNA1509_27615, RNA1509_46296} {RNA1310_67870, RNA1509_27615, RNA1509_46296} {RNA1509_27615, RNA1509_46296, RNA815_34291}
4. MligTC455_41855 700 14.59 Mlig455_007846

Neo: -

Age: Down-Up-Down

 0.959 - - - - 0.959 - Mlig455_007846 {REF} {Length: 2805} {Pfam: Profilin [PF00235.21, score=46.7]} {RNA1509_36755} {RNA1310_26877} {RNA815_12700.1}
5. MligTC455_45712 91 1.89 Mlig455_050761, Mlig455_050791

Neo: -

Age: -

 0.957 0.957 - - - - -

Mlig455_050761 {REF} {Length: 2816} {RNA1509_10628} {RNA1310_39724.1} {RNA815_34935}

Mlig455_050791 {REF} {Length: 2817} {RNA1509_10628} {RNA1310_39724.1} {RNA815_34935}
6. MligTC455_28248 3126 65.13 Mlig455_003207, Mlig455_005547, Mlig455_006315, Mlig455_006768, Mlig455_006769, Mlig455_007921, Mlig455_008586, Mlig455_011885, Mlig455_012466, Mlig455_012576, Mlig455_018867, Mlig455_020084, Mlig455_021561, Mlig455_023543, Mlig455_026754, Mlig455_026915, Mlig455_027008, Mlig455_027776, Mlig455_033879, Mlig455_044132, Mlig455_048742, Mlig455_060287, Mlig455_060792, Mlig455_060821, Mlig455_065972, Mlig455_066260, Mlig455_066867

Neo: -

Age: -

 0.954 - - - - 0.954 -

Mlig455_003207 {REF} {Length: 733} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_005547 {REF} {Length: 740} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_006315 {REF} {Length: 256} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_006768 {REF} {Length: 526} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_006769 {REF} {Length: 134} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_59621} {RNA1310_49040} {RNA815_8074.2}

Mlig455_007921 {REF} {Length: 1254} {TRANSSPLICED} {RNA1509_48039, RNA1509_57805} {RNA1310_9829, RNA1509_48039} {RNA1509_48039, RNA815_8074.2}

Mlig455_008586 {REF} {Length: 2034} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_011885 {REF} {Length: 734} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_012466 {REF} {Length: 684} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_012576 {REF} {Length: 660} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_018867 {REF} {Length: 712} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_020084 {REF} {Length: 733} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_021561 {REF} {Length: 733} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_023543 {REF} {Length: 3244} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_026754 {REF} {Length: 733} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_026915 {REF} {Length: 3002} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_027008 {REF} {Length: 733} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_027776 {REF} {Length: 743} {NoTransDecoderORF} {RNA1509_6772} {RNA1310_1112.1} {RNA815_8074.1}

Mlig455_033879 {REF} {Length: 733} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_044132 {REF} {Length: 733} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_048742 {REF} {Length: 733} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_060287 {REF} {Length: 732} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_060792 {REF} {Length: 744} {TRANSSPLICED} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_060821 {REF} {Length: 738} {TRANSSPLICED} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_065972 {REF} {Length: 733} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_066260 {REF} {Length: 528} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}

Mlig455_066867 {REF} {Length: 441} {NoTransDecoderORF} {RNA1509_57805} {RNA1310_1112.1} {RNA815_8074.2}
7. MligTC455_39181 265 5.52 Mlig455_061266

Neo: Int S/G2/M

Age: -

Region-specific R4: 3.386

 NCAPH 0.953 - - - - 0.953 - Mlig455_061266 {REF} {Length: 4275} {Pfam: Condensin complex subunit 2 [PF05786.16, score=260.1]} {Human: ENSG00000121152, NCAPH, non-SMC condensin I complex subunit H, [Score=129, Expect=5e-30]} {Mouse: ENSMUSG00000034906, Ncaph, non-SMC condensin I complex, subunit H, [Score=129, Expect=2e-30]} {Dmel: FBgn0014127, barr, barren, [RH, Score=70.1, Expect=5e-12]} {Smed: dd_Smed_v6_8491_0_3, dd_Smed_v6_8491_0_3, [RH, Score=159, Expect=4e-40]} {RNA1509_7623} {RNA1310_2562.1} {RNA815_8919}
8. MligTC455_39470 79 1.65 Mlig455_036326

Neo: -

Age: logFC(26M/2M)=0.280

 RBM14 0.953 - - - 0.953 - - Mlig455_036326 {REF} {Length: 3821} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=40.2]} {Human: ENSG00000239306, RBM14, RNA binding motif protein 14, [RH, Score=69.7, Expect=3e-12]} {Mouse: ENSMUSG00000006456, Rbm14, RNA binding motif protein 14, [RH, Score=70.1, Expect=2e-12]} {Dmel: FBgn0039730, CG7903, [RH, Score=60.1, Expect=1e-09]} {Celegans: WBGene00004384, rnp-1, RNA-binding protein rnp-1, [RH, Score=53.5, Expect=1e-07]} {RNA1509_2640} {RNA1310_12503.1} {RNA815_10453.1}
9. MligTC455_38041 221 4.61 Mlig455_050363

Neo: -

Age: -

 PITPNM1 0.952 - - - - 0.952 - Mlig455_050363 {REF} {Length: 6960} {Pfam: Phosphatidylinositol transfer protein [PF02121.20, score=355.5]; DDHD domain [PF02862.19, score=125.1]} {Human: ENSG00000110697, PITPNM1, phosphatidylinositol transfer protein membrane associated 1, [RH, Score=937, Expect=0.0]} {Mouse: ENSMUSG00000024851, Pitpnm1, phosphatidylinositol transfer protein, membrane-associated 1, [RH, Score=940, Expect=0.0]; ENSMUSG00000097096, Pitpnm1, phosphatidylinositol transfer protein, membrane-associated 1, [RH, Score=940, Expect=0.0]} {Dmel: FBgn0003218, rdgB, retinal degeneration B, [RH, Score=644, Expect=0.0]} {Celegans: WBGene00010813, pitp-1, PhosphatidylInositol Transfer Protein family, [RH, Score=385, Expect=5e-115]} {Smed: dd_Smed_v6_7211_0_2, dd_Smed_v6_7211_0_2, [RH, Score=961, Expect=0.0]} {RNA1509_13228} {RNA1310_1072, RNA1509_13228} {RNA1509_13228, RNA815_6615}
10. MligTC455_07051 26 0.54 Mlig455_024162, Mlig455_047642

Neo: -

Age: -

 0.951 - - - - 0.951 -

Mlig455_024162 {REF} {Length: 2495} {Pfam: SET domain [PF00856.30, score=35.1]; C2H2-type zinc-finger domain [PF13909.8, score=22.1]} {RNA1310_131883} {RNA815_45891}

Mlig455_047642 {REF} {Length: 799} {RNA1310_131883}
11. MligTC455_23666 98 2.04 Mlig455_053104

Neo: -

Age: logFC(26M/2M)=-0.474

 CD81 0.95 - - - - 0.950 - Mlig455_053104 {REF} {Length: 1119} {Pfam: Tetraspanin family [PF00335.22, score=145.9]} {Human: ENSG00000110651, CD81, CD81 molecule, [RH, Score=98.2, Expect=3e-24]} {Mouse: ENSMUSG00000027858, Tspan2, tetraspanin 2, [RH, Score=99.4, Expect=6e-25]; ENSMUSG00000037706, Cd81, CD81 antigen, [RH, Score=96.7, Expect=9e-24]} {Dmel: FBgn0027865, Tsp96F, Tetraspanin 96F, [RH, Score=108, Expect=6e-28]} {Celegans: WBGene00006632, tsp-6, Tetraspanin, [Score=70.5, Expect=2e-14]} {Smed: dd_Smed_v6_4080_0_1, dd_Smed_v6_4080_0_1, [RH, Score=133, Expect=4e-38]} {RNA1509_50357} {RNA1310_14356} {RNA815_6172.1}
12. MligTC455_46330 29 0.6 Mlig455_065806

Neo: -

Age: -

 PTK2 0.95 - - - - 0.950 - Mlig455_065806 {REF} {Length: 2146} {TRANSSPLICED} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=105.8]; Protein kinase domain [PF00069.27, score=96.5]} {Human: ENSG00000169398, PTK2, protein tyrosine kinase 2, [Score=76.6, Expect=5e-14]} {Mouse: ENSMUSG00000022607, Ptk2, PTK2 protein tyrosine kinase 2, [Score=77.0, Expect=3e-14]} {Dmel: FBgn0263998, Ack-like, Activated Cdc42 kinase-like, [Score=71.6, Expect=1e-12]} {Celegans: WBGene00020106, R151.1, [Score=73.6, Expect=9e-14]} {Smed: dd_Smed_v6_953_0_1, dd_Smed_v6_953_0_1, [Score=86.7, Expect=6e-18]} {RNA1509_30739} {RNA1310_11977} {RNA815_9004}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA