TomoSeq data search

Data search

Results for MligTC455_47479

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_47479

94

1.96

Mlig455_001396

Neo: -

Age: Down-Up-Up

TRAF4

Mlig455_001396 {REF} {Length: 1682} {Human: ENSG00000076604, TRAF4, TNF receptor associated factor 4, [Score=91.7, Expect=2e-20]} {Mouse: ENSMUSG00000017386, Traf4, TNF receptor associated factor 4, [Score=92.4, Expect=6e-21]} {Celegans: WBGene00006612, trf-1, TNF Receptor Associated Factor (TRAF) homolog; TRF-1, [Score=108, Expect=5e-27]} {Smed: dd_Smed_v6_13517_0_1, dd_Smed_v6_13517_0_1, [Score=146, Expect=2e-40]} {RNA1310_27902.1} {RNA815_12300}

Cumulative graph for MligTC455_47479

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-3.316	1.726	0.55133	1.00000
RegionR2	-1.136	1.726	0.99173	1.00000
RegionR3	-0.065	1.726	0.87601	1.00000
RegionR4	1.24	1.726	0.32064	0.63749
RegionR5	-0.085	1.726	0.87918	1.00000
RegionR6	0.141	1.726	0.80216	1.00000
RegionR7	1.496	1.726	0.15926	0.73680
RegionR8	1.724	1.726	0.17185	0.74751

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-1.187	1.726	0.99991	1.00000
RegenerationR2	0.015	1.726	0.98634	1.00000
RegenerationR3	-1.334	1.726	0.09339	0.49184
RegenerationR4	-1.023	1.726	0.25927	0.70746
RegenerationR5	-2.291	1.726	0.00931	0.17373
RegenerationR6	-1.715	1.726	0.05188	0.28538
RegenerationBL	-0.666	1.726	0.45341	0.82043
RegenerationTP	-1.262	1.726	0.16066	0.58944

Genes with expression patterns similar to MligTC455_47479

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_47479	94	1.96	Mlig455_001396	Neo: - Age: Down-Up-Up	TRAF4	5	1.000	-	1.000	1.000	1.000	1.000	Mlig455_001396 {REF} {Length: 1682} {Human: ENSG00000076604, TRAF4, TNF receptor associated factor 4, [Score=91.7, Expect=2e-20]} {Mouse: ENSMUSG00000017386, Traf4, TNF receptor associated factor 4, [Score=92.4, Expect=6e-21]} {Celegans: WBGene00006612, trf-1, TNF Receptor Associated Factor (TRAF) homolog; TRF-1, [Score=108, Expect=5e-27]} {Smed: dd_Smed_v6_13517_0_1, dd_Smed_v6_13517_0_1, [Score=146, Expect=2e-40]} {RNA1310_27902.1} {RNA815_12300}
2.	MligTC455_24081	60	1.25	Mlig455_032844	Neo: - Age: Down-Down-Up, logFC(26M/2M)=0.827	MUC4	0.969	-	-	0.969	-	-	-	Mlig455_032844 {REF} {Length: 2899} {Pfam: von Willebrand factor type D domain [PF00094.27, score=29.2]} {Human: ENSG00000277585, MUC4, mucin 4, cell surface associated, [Score=99.0, Expect=5e-21]; ENSG00000278468, MUC4, mucin 4, cell surface associated, [Score=99.0, Expect=5e-21]; ENSG00000278303, MUC4, mucin 4, cell surface associated, [Score=98.6, Expect=7e-21]; ENSG00000145113, MUC4, mucin 4, cell surface associated, [Score=98.6, Expect=7e-21]; ENSG00000276613, MUC4, mucin 4, cell surface associated, [Score=98.6, Expect=7e-21]; ENSG00000273984, MUC4, mucin 4, cell surface associated, [Score=98.6, Expect=7e-21]; ENSG00000273822, MUC4, mucin 4, cell surface associated, [Score=98.6, Expect=7e-21]} {Mouse: ENSMUSG00000079620, Muc4, mucin 4, [Score=89.7, Expect=3e-18]} {Dmel: FBgn0051004, mesh, [Score=48.9, Expect=1e-05]} {RNA1509_26110} {RNA1310_679.1} {RNA815_472.1}
3.	MligTC455_19231	149	3.11	Mlig455_064092	Neo: - Age: - Region-enriched R7: 4.202/0.00037 Region-enriched R6: 3.700/0.00828		0.96	-	-	-	-	-	0.960	Mlig455_064092 {REF} {Length: 1757} {RNA1509_35166} {RNA1310_79280} {RNA815_45488}
4.	MligTC455_48960	52	1.09	Mlig455_014079	Neo: - Age: -		0.956	-	-	-	-	-	0.956	Mlig455_014079 {REF} {Length: 2345} {Pfam: PMP-22/EMP/MP20/Claudin tight junction [PF13903.8, score=25.9]; PMP-22/EMP/MP20/Claudin family [PF00822.22, score=21.0]} {Dmel: FBgn0034267, CG4984, [RH, Score=69.7, Expect=7e-13]} {Celegans: WBGene00016706, C46C11.3, [Score=47.4, Expect=4e-06]} {Smed: dd_Smed_v6_9946_0_1, dd_Smed_v6_9946_0_1, [RH, Score=56.2, Expect=5e-09]} {RNA1509_43217} {RNA1310_16701} {RNA815_8110}

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