Data search
Results for MligTC455_47817
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_47817 | 284 | 5.91 | Mlig455_046861 | Neo: - Age: - |
SDR42E1 | Mlig455_046861 {REF} {Length: 2105} {TRANSSPLICED} {Pfam: 3-beta hydroxysteroid dehydrogenase/isomerase family [PF01073.21, score=205.8]; NAD dependent epimerase/dehydratase family [PF01370.23, score=110.8]; RmlD substrate binding domain [PF04321.19, score=65.7]; GDP-mannose 4,6 dehydratase [PF16363.7, score=48.6]; NAD(P)H-binding [PF13460.8, score=39.7]; Male sterility protein [PF07993.14, score=39.5]; Polysaccharide biosynthesis protein [PF02719.17, score=27.0]} {Human: ENSG00000184860, SDR42E1, short chain dehydrogenase/reductase family 42E, member 1, [RH, Score=316, Expect=6e-105]} {Mouse: ENSMUSG00000034308, Sdr42e1, short chain dehydrogenase/reductase family 42E, member 1, [RH, Score=313, Expect=9e-104]} {Dmel: FBgn0036698, CG7724, [Score=58.9, Expect=3e-09]} {Celegans: WBGene00012394, hsd-1, HydroxySteroid Dehydrogenase homolog, [RH, Score=120, Expect=4e-30]} {RNA1509_53922} {RNA1310_22604.1} {RNA815_25343} |
Cumulative graph for MligTC455_47817
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -6.47 | 3.121 | 0.08880 | 0.64184 | |
| RegionR2 | 1.293 | 3.121 | 0.13567 | 0.45722 | |
| RegionR3 | 1.235 | 3.121 | 0.08016 | 0.50116 | |
| RegionR4 | 0.517 | 3.121 | 0.57102 | 0.88919 | |
| RegionR5 | 1.137 | 3.121 | 0.08908 | 0.28167 | |
| RegionR6 | 0.209 | 3.121 | 0.76048 | 1.00000 | |
| RegionR7 | 1.326 | 3.121 | 0.13900 | 0.69837 | |
| RegionR8 | 0.752 | 3.121 | 0.52244 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 6.305 | 3.121 | 0.18030 | 0.92306 | |
| RegenerationR2 | -0.712 | 3.121 | 0.10331 | 0.50707 | |
| RegenerationR3 | -0.226 | 3.121 | 0.61746 | 0.91562 | |
| RegenerationR4 | -0.072 | 3.121 | 0.87801 | 1.00000 | |
| RegenerationR5 | 0.269 | 3.121 | 0.47680 | 0.84533 | |
| RegenerationR6 | -0.405 | 3.121 | 0.48076 | 0.79223 | |
| RegenerationBL | 0.483 | 3.121 | 0.45020 | 0.81716 | |
| RegenerationTP | -3.24 | 3.121 | 0.00584 | 0.12777 |
Genes with expression patterns similar to MligTC455_47817
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_47817 | 284 | 5.91 | Mlig455_046861 | Neo: - Age: - |
SDR42E1 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_046861 {REF} {Length: 2105} {TRANSSPLICED} {Pfam: 3-beta hydroxysteroid dehydrogenase/isomerase family [PF01073.21, score=205.8]; NAD dependent epimerase/dehydratase family [PF01370.23, score=110.8]; RmlD substrate binding domain [PF04321.19, score=65.7]; GDP-mannose 4,6 dehydratase [PF16363.7, score=48.6]; NAD(P)H-binding [PF13460.8, score=39.7]; Male sterility protein [PF07993.14, score=39.5]; Polysaccharide biosynthesis protein [PF02719.17, score=27.0]} {Human: ENSG00000184860, SDR42E1, short chain dehydrogenase/reductase family 42E, member 1, [RH, Score=316, Expect=6e-105]} {Mouse: ENSMUSG00000034308, Sdr42e1, short chain dehydrogenase/reductase family 42E, member 1, [RH, Score=313, Expect=9e-104]} {Dmel: FBgn0036698, CG7724, [Score=58.9, Expect=3e-09]} {Celegans: WBGene00012394, hsd-1, HydroxySteroid Dehydrogenase homolog, [RH, Score=120, Expect=4e-30]} {RNA1509_53922} {RNA1310_22604.1} {RNA815_25343} |
| 2. | MligTC455_34171 | 1083 | 22.57 | Mlig455_037006 | Neo: Int S/G2/M |
RACK1 | 1.702 | - | - | - | 0.964 | - | 0.738 | Mlig455_037006 {REF} {Length: 1275} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=161.9]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=46.0]; Nucleoporin Nup120/160 [PF11715.10, score=32.7]; WD40 region of Ge1, enhancer of mRNA-decapping protein [PF16529.7, score=23.1]; Eukaryotic translation initiation factor eIF2A [PF08662.13, score=21.3]; Cytochrome D1 heme domain [PF02239.18, score=18.9]; Protein of unknown function (DUF1513) [PF07433.13, score=18.9]} {Human: ENSG00000204628, RACK1, receptor for activated C kinase 1, [Score=510, Expect=0.0]} {Mouse: ENSMUSG00000020372, Rack1, receptor for activated C kinase 1, [Score=510, Expect=0.0]} {Dmel: FBgn0020618, Rack1, Receptor of activated protein kinase C 1, [RH, Score=461, Expect=1e-164]} {Celegans: WBGene00010556, rack-1, Guanine nucleotide-binding protein subunit beta-2-like 1, [RH, Score=434, Expect=7e-154]} {Smed: dd_Smed_v6_174_0_1, dd_Smed_v6_174_0_1, [RH, Score=485, Expect=2e-174]} {RNA1509_454} {RNA1310_23103.1} {RNA815_9604} |
| 3. | MligTC455_29609 | 271 | 5.64 | Mlig455_059930 | Neo: - Age: - |
0.962 | - | - | - | 0.962 | - | - | Mlig455_059930 {REF} {Length: 2573} {TRANSSPLICED} {RNA1509_15693} {RNA1310_30603, RNA1509_15693} {RNA1509_15693, RNA815_16223} | |
| 4. | MligTC455_48244 | 75 | 1.56 | Mlig455_059176 | Neo: - Age: - |
0.962 | - | - | - | - | - | 0.962 | Mlig455_059176 {REF} {Length: 590} {NoTransDecoderORF} {RNA1310_59338} {RNA815_44564} | |
| 5. | MligTC455_45274 | 60 | 1.26 | Mlig455_047931 | Neo: - Age: - Region-enriched R5: 2.784/0.04619 |
0.958 | - | - | - | - | - | 0.958 | Mlig455_047931 {REF} {Length: 1006} {NoTransDecoderORF} {RNA1310_43124} {RNA815_22128} | |
| 6. | MligTC455_53705 | 458 | 9.55 | Mlig455_025924 | Neo: - Age: - |
GTF2F2 | 0.953 | - | - | - | 0.953 | - | - | Mlig455_025924 {REF} {Length: 1877} {TRANSSPLICED} {Pfam: TFIIF, beta subunit HTH domain [PF02270.17, score=79.6]; TFIIF, beta subunit N-terminus [PF17683.3, score=39.8]} {Human: ENSG00000188342, GTF2F2, general transcription factor IIF subunit 2, [RH, Score=176, Expect=5e-53]} {Mouse: ENSMUSG00000067995, Gtf2f2, general transcription factor IIF, polypeptide 2, [RH, Score=174, Expect=1e-52]} {Dmel: FBgn0010421, TfIIFbeta, Transcription factor TFIIFbeta, [RH, Score=163, Expect=3e-48]} {Celegans: WBGene00012694, Y39B6A.36, General transcription factor IIF subunit 2, [Score=126, Expect=3e-34]} {Smed: dd_Smed_v6_2142_0_1, dd_Smed_v6_2142_0_1, [RH, Score=93.6, Expect=5e-22]} {RNA1509_11554, RNA1509_45734} {RNA1310_14522, RNA1509_11554, RNA1509_45734} {RNA1509_11554, RNA1509_45734, RNA815_1242.1} |
| 7. | MligTC455_48025 | 549 | 11.44 | Mlig455_066964 | Neo: - Age: - |
0.952 | - | - | - | 0.952 | - | - | Mlig455_066964 {REF} {Length: 1735} {TRANSSPLICED} {Pfam: C-terminal duplication domain of Friend of PRMT1 [PF13865.8, score=28.0]} {RNA1509_8514} {RNA1310_4141.1, RNA1509_8514} {RNA1509_8514, RNA815_7360} | |
| 8. | MligTC455_48758 | 163 | 3.39 | Mlig455_010315 | Neo: Int S/G2/M |
ARF6 | 0.951 | - | - | - | - | - | 0.951 | Mlig455_010315 {REF} {Length: 1923} {TRANSSPLICED} {Pfam: ADP-ribosylation factor family [PF00025.23, score=247.3]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=55.7]; Ras family [PF00071.24, score=50.7]; Signal recognition particle receptor beta subunit [PF09439.12, score=45.8]; G-protein alpha subunit [PF00503.22, score=38.6]; Gtr1/RagA G protein conserved region [PF04670.14, score=33.9]; 50S ribosome-binding GTPase [PF01926.25, score=24.2]; 6-phosphofructo-2-kinase [PF01591.20, score=18.1]} {Human: ENSG00000165527, ARF6, ADP ribosylation factor 6, [RH, Score=301, Expect=7e-106]} {Mouse: ENSMUSG00000044147, Arf6, ADP-ribosylation factor 6, [RH, Score=301, Expect=5e-106]} {Dmel: FBgn0013750, Arf51F, ADP ribosylation factor at 51F, [RH, Score=296, Expect=4e-104]} {Celegans: WBGene00000184, arf-6, ADP-Ribosylation Factor related, [RH, Score=292, Expect=1e-102]} {Smed: dd_Smed_v6_2125_0_1, dd_Smed_v6_2125_0_1, [RH, Score=279, Expect=1e-97]} {RNA1509_10836, RNA1509_35617} {RNA1310_23391, RNA1509_35617} {RNA1509_35617, RNA815_10077} |
| 9. | MligTC455_48930 | 897 | 18.69 | Mlig455_062351, Mlig455_062364, Mlig455_062383 | Neo: - Age: logFC(26M/2M)=-0.487 Regeneration-enriched BL: 1.778 |
SNRPB2 | 0.95 | - | - | - | 0.950 | - | - | Mlig455_062351 {REF} {Length: 3624} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=74.4]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=37.4]} {Human: ENSG00000125870, SNRPB2, small nuclear ribonucleoprotein polypeptide B2, [Score=200, Expect=4e-64]; ENSG00000077312, SNRPA, small nuclear ribonucleoprotein polypeptide A, [Score=191, Expect=9e-60]} {Mouse: ENSMUSG00000008333, Snrpb2, U2 small nuclear ribonucleoprotein B, [Score=203, Expect=1e-65]} {Dmel: FBgn0003449, snf, sans fille, [Score=174, Expect=2e-54]} {Celegans: WBGene00004386, rnp-3, RNP (RRM RNA binding domain) containing, [Score=164, Expect=1e-50]} {Smed: dd_Smed_v6_2444_0_1, dd_Smed_v6_2444_0_1, [Score=196, Expect=6e-63]} {RNA1509_22935, RNA1509_25711} {RNA1310_2913, RNA1509_25711} {RNA1509_25711, RNA815_7310} Mlig455_062364 {REF} {Length: 2011} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=74.4]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=37.4]} {Human: ENSG00000125870, SNRPB2, small nuclear ribonucleoprotein polypeptide B2, [Score=200, Expect=4e-64]; ENSG00000077312, SNRPA, small nuclear ribonucleoprotein polypeptide A, [Score=191, Expect=9e-60]} {Mouse: ENSMUSG00000008333, Snrpb2, U2 small nuclear ribonucleoprotein B, [Score=203, Expect=1e-65]} {Dmel: FBgn0003449, snf, sans fille, [Score=174, Expect=2e-54]} {Celegans: WBGene00004386, rnp-3, RNP (RRM RNA binding domain) containing, [Score=164, Expect=1e-50]} {Smed: dd_Smed_v6_2444_0_1, dd_Smed_v6_2444_0_1, [Score=196, Expect=6e-63]} {RNA1509_22935} {RNA1310_2913} {RNA815_7310} Mlig455_062383 {REF} {Length: 2026} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=74.2]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=37.5]} {Human: ENSG00000125870, SNRPB2, small nuclear ribonucleoprotein polypeptide B2, [Score=202, Expect=5e-65]; ENSG00000077312, SNRPA, small nuclear ribonucleoprotein polypeptide A, [Score=192, Expect=5e-60]} {Mouse: ENSMUSG00000008333, Snrpb2, U2 small nuclear ribonucleoprotein B, [Score=206, Expect=1e-66]} {Dmel: FBgn0003449, snf, sans fille, [Score=175, Expect=9e-55]} {Celegans: WBGene00004386, rnp-3, RNP (RRM RNA binding domain) containing, [Score=164, Expect=1e-50]} {Smed: dd_Smed_v6_2444_0_1, dd_Smed_v6_2444_0_1, [Score=199, Expect=6e-64]} {RNA1509_22935, RNA1509_35461} {RNA1310_2913, RNA1509_35461} {RNA1509_35461, RNA815_7310} |
| 10. | MligTC455_52830 | 508 | 10.58 | Mlig455_066888 | Neo: Int S/G2/M Age: - Region-enriched R5: 1.089/0.00951 |
0.95 | - | - | - | 0.950 | - | - | Mlig455_066888 {REF} {Length: 6019} {TRANSSPLICED} {Pfam: AIMP2 lysyl-tRNA synthetase binding domain [PF16780.7, score=25.7]} {RNA1509_26768} {RNA1310_27753} {RNA815_13233.1} |
Berezikov Lab - 2020-2021 © ERIBA