M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_48132

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_48132 13 0.26 Mlig455_063178

Neo: -

Age: -

 PARP2 Mlig455_063178 {REF} {Length: 2282} {TRANSSPLICED} {Pfam: Poly(ADP-ribose) polymerase catalytic domain [PF00644.22, score=210.5]; Poly(ADP-ribose) polymerase, regulatory domain [PF02877.16, score=142.9]; WGR domain [PF05406.17, score=88.1]; WWE domain [PF02825.22, score=79.0]} {Human: ENSG00000129484, PARP2, poly(ADP-ribose) polymerase 2, [RH, Score=510, Expect=3e-173]} {Mouse: ENSMUSG00000036023, Parp2, poly (ADP-ribose) polymerase family, member 2, [RH, Score=525, Expect=1e-179]} {Dmel: FBgn0010247, Parp, Poly-(ADP-ribose) polymerase, [Score=325, Expect=1e-97]} {Celegans: WBGene00004049, parp-1, Poly(ADP-ribose) polymerase pme-1, [Score=304, Expect=2e-90]} {Smed: dd_Smed_v6_6154_0_8, dd_Smed_v6_6154_0_8, [RH, Score=484, Expect=4e-161]} {RNA1509_8942} {RNA1310_3564} {RNA815_7699}

Cumulative graph for MligTC455_48132

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.111 0.68 1.00000 1.00000
RegionR2 -0.396 0.68 0.99994 1.00000
RegionR3 0.001 0.68 0.99998 1.00000
RegionR4 0.216 0.68 1.00000 1.00000
RegionR5 0.094 0.68 0.99983 1.00000
RegionR6 -0.196 0.68 0.99993 1.00000
RegionR7 -0.112 0.68 0.99997 1.00000
RegionR8 0.283 0.68 0.99991 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.895 0.68 0.99994 1.00000
RegenerationR2 0.796 0.68 0.95221 1.00000
RegenerationR3 1.749 0.68 0.24208 0.67670
RegenerationR4 1.77 0.68 0.42830 0.82985
RegenerationR5 1.236 0.68 0.53569 0.87718
RegenerationR6 2.711 0.68 0.26611 0.61598
RegenerationBL 3.483 0.68 0.30616 0.67050
RegenerationTP -0.612 0.68 0.99989 1.00000


Genes with expression patterns similar to MligTC455_48132

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_48132 13 0.26 Mlig455_063178

Neo: -

Age: -

 PARP2 2 - - - 1.000 1.000 - Mlig455_063178 {REF} {Length: 2282} {TRANSSPLICED} {Pfam: Poly(ADP-ribose) polymerase catalytic domain [PF00644.22, score=210.5]; Poly(ADP-ribose) polymerase, regulatory domain [PF02877.16, score=142.9]; WGR domain [PF05406.17, score=88.1]; WWE domain [PF02825.22, score=79.0]} {Human: ENSG00000129484, PARP2, poly(ADP-ribose) polymerase 2, [RH, Score=510, Expect=3e-173]} {Mouse: ENSMUSG00000036023, Parp2, poly (ADP-ribose) polymerase family, member 2, [RH, Score=525, Expect=1e-179]} {Dmel: FBgn0010247, Parp, Poly-(ADP-ribose) polymerase, [Score=325, Expect=1e-97]} {Celegans: WBGene00004049, parp-1, Poly(ADP-ribose) polymerase pme-1, [Score=304, Expect=2e-90]} {Smed: dd_Smed_v6_6154_0_8, dd_Smed_v6_6154_0_8, [RH, Score=484, Expect=4e-161]} {RNA1509_8942} {RNA1310_3564} {RNA815_7699}
2. MligTC455_15690 117 2.43 Mlig455_068703

Neo: Irradiation

Age: -

Regeneration-enriched R6: 7.474
Regeneration-enriched BL: 6.776
Regeneration-enriched R3: 5.564
Regeneration-enriched R4: 5.451
Regeneration-enriched R5: 5.213

 0.992 - - - 0.992 - - Mlig455_068703 {REF} {Length: 1557} {RNA1509_38578} {RNA1310_39831} {RNA815_50594}
3. MligTC455_31364 153 3.19 Mlig455_058340

Neo: -

Age: logFC(26M/2M)=0.672

 0.988 - - - 0.988 - - Mlig455_058340 {REF} {Length: 580} {NoTransDecoderORF} {RNA1509_51469} {RNA1310_102877, RNA1509_51469} {RNA1509_51469, RNA815_22632}
4. MligTC455_15689 115 2.4 Mlig455_032535

Neo: -

Age: -

Regeneration-enriched R6: 7.489
Regeneration-enriched BL: 6.877
Regeneration-enriched R4: 5.608
Regeneration-enriched R3: 5.570
Regeneration-enriched R5: 5.313

 0.982 - - - 0.982 - - Mlig455_032535 {REF} {Length: 487} {NoTransDecoderORF} {RNA1509_23966} {RNA1310_63649} {RNA815_50594}
5. MligTC455_39841 153 3.19 Mlig455_011412, Mlig455_061157

Neo: -

Age: -

 WNT11, WNT4 0.982 - - - 0.982 - -

Mlig455_011412 {REF} {Length: 1772} {Pfam: wnt family [PF00110.21, score=129.8]} {Human: ENSG00000085741, WNT11, Wnt family member 11, [Score=83.2, Expect=7e-17]; ENSG00000162552, WNT4, Wnt family member 4, [Score=82.0, Expect=2e-16]; ENSG00000134245, WNT2B, Wnt family member 2B, [Score=81.6, Expect=3e-16]; ENSG00000188064, WNT7B, Wnt family member 7B, [Score=79.7, Expect=9e-16]} {Mouse: ENSMUSG00000015957, Wnt11, wingless-type MMTV integration site family, member 11, [Score=87.8, Expect=1e-18]} {Dmel: FBgn0010453, Wnt4, Wnt oncogene analog 4, [Score=78.2, Expect=4e-15]} {Celegans: WBGene00000857, cwn-1, [Score=75.5, Expect=1e-14]} {Smed: dd_Smed_v6_16209_0_1, dd_Smed_v6_16209_0_1, [RH, Score=126, Expect=5e-32]}

Mlig455_061157 {REF} {Length: 1724} {Pfam: wnt family [PF00110.21, score=134.3]} {Human: ENSG00000162552, WNT4, Wnt family member 4, [Score=84.0, Expect=4e-17]; ENSG00000188064, WNT7B, Wnt family member 7B, [Score=80.5, Expect=4e-16]; ENSG00000158955, WNT9B, Wnt family member 9B, [Score=80.1, Expect=8e-16]; ENSG00000002745, WNT16, Wnt family member 16, [Score=80.1, Expect=8e-16]; ENSG00000276799, WNT9B, Wnt family member 9B, [Score=80.1, Expect=8e-16]} {Mouse: ENSMUSG00000015957, Wnt11, wingless-type MMTV integration site family, member 11, [Score=85.9, Expect=6e-18]; ENSMUSG00000036856, Wnt4, wingless-type MMTV integration site family, member 4, [Score=84.3, Expect=2e-17]} {Dmel: FBgn0010453, Wnt4, Wnt oncogene analog 4, [Score=87.0, Expect=6e-18]} {Celegans: WBGene00000857, cwn-1, [Score=75.9, Expect=9e-15]} {Smed: dd_Smed_v6_14391_0_1, dd_Smed_v6_14391_0_1, [Score=129, Expect=2e-33]}
6. MligTC455_37307 32 0.67 Mlig455_057336

Neo: -

Age: -

 0.974 - - - 0.974 - - Mlig455_057336 {REF} {Length: 2329} {TRANSSPLICED} {Pfam: GIY-YIG catalytic domain [PF01541.26, score=20.5]} {RNA1509_58257} {RNA1310_26667} {RNA815_13375.1}
7. MligTC455_31365 164 3.42 Mlig455_063065

Neo: Irradiation

Age: Up-Down-Up, logFC(26M/2M)=0.426

 DDX27 0.971 - - - 0.971 - - Mlig455_063065 {REF} {Length: 3157} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=158.5]; Helicase conserved C-terminal domain [PF00271.33, score=98.5]; Type III restriction enzyme, res subunit [PF04851.17, score=23.2]; Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 [PF06862.14, score=18.0]} {Human: ENSG00000124228, DDX27, DEAD-box helicase 27, [RH, Score=531, Expect=9e-180]} {Mouse: ENSMUSG00000017999, Ddx27, DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, [RH, Score=518, Expect=9e-175]} {Dmel: FBgn0021995, Rs1, [RH, Score=493, Expect=4e-165]} {Celegans: WBGene00022148, ddx-27, DEAD boX helicase homolog, [RH, Score=506, Expect=9e-171]} {Smed: dd_Smed_v6_5413_0_1, dd_Smed_v6_5413_0_1, [RH, Score=468, Expect=8e-158]} {RNA1509_13819} {RNA1310_9851, RNA1509_13819} {RNA1509_13819, RNA815_4333}
8. MligTC455_18394 114 2.38 Mlig455_055027

Neo: -

Age: -

Region-enriched R7: 4.917/0.00210

 0.97 - - - 0.970 - - Mlig455_055027 {REF} {Length: 1852} {Celegans: WBGene00015646, mlt-10, [Score=84.3, Expect=4e-19]} {RNA1509_53936} {RNA1310_36942} {RNA815_27717}
9. MligTC455_25233 925 19.27 Mlig455_002798, Mlig455_002812

Neo: Irradiation

Age: -

 CDC25B 0.97 - - - 0.970 - -

Mlig455_002798 {REF} {Length: 2234} {Pfam: Rhodanese-like domain [PF00581.22, score=42.3]} {Human: ENSG00000101224, CDC25B, cell division cycle 25B, [RH, Score=165, Expect=1e-44]} {Mouse: ENSMUSG00000027330, Cdc25b, cell division cycle 25B, [Score=160, Expect=9e-43]; ENSMUSG00000032477, Cdc25a, cell division cycle 25A, [Score=155, Expect=2e-41]} {Dmel: FBgn0003525, stg, string, [RH, Score=193, Expect=1e-55]} {Celegans: WBGene00000389, cdc-25.4, Cell Division Cycle related, [RH, Score=103, Expect=1e-24]} {Smed: dd_Smed_v6_7176_0_2, dd_Smed_v6_7176_0_2, [RH, Score=113, Expect=6e-27]} {RNA1509_22510} {RNA1310_11197} {RNA815_20308}

Mlig455_002812 {REF} {Length: 2309} {Pfam: Rhodanese-like domain [PF00581.22, score=41.9]} {Human: ENSG00000101224, CDC25B, cell division cycle 25B, [RH, Score=164, Expect=4e-44]} {Mouse: ENSMUSG00000027330, Cdc25b, cell division cycle 25B, [Score=159, Expect=3e-42]; ENSMUSG00000032477, Cdc25a, cell division cycle 25A, [Score=155, Expect=4e-41]} {Dmel: FBgn0003525, stg, string, [RH, Score=191, Expect=7e-55]} {Celegans: WBGene00000389, cdc-25.4, Cell Division Cycle related, [RH, Score=103, Expect=2e-24]} {Smed: dd_Smed_v6_7858_0_3, dd_Smed_v6_7858_0_3, [Score=116, Expect=7e-28]} {RNA1509_22510} {RNA1310_11197} {RNA815_20308}
10. MligTC455_27248 243 5.07 Mlig455_059044

Neo: Irradiation

Age: -

 ZBTB11 0.97 - - - 0.970 - - Mlig455_059044 {REF} {Length: 5690} {Pfam: C2H2-type zinc-finger domain [PF13909.8, score=65.9]; Zinc-finger double domain [PF13465.8, score=35.9]; Zinc finger C2H2-type, 3 repeats [PF18868.3, score=28.4]; Zinc finger, C2H2 type [PF00096.28, score=21.3]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=19.8]} {Human: ENSG00000066422, ZBTB11, zinc finger and BTB domain containing 11, [Score=82.0, Expect=5e-15]} {Mouse: ENSMUSG00000022601, Zbtb11, zinc finger and BTB domain containing 11, [Score=79.7, Expect=2e-14]; ENSMUSG00000070495, Ctcfl, CCCTC-binding factor (zinc finger protein)-like, [Score=77.4, Expect=6e-14]} {Dmel: FBgn0031573, CG3407, [Score=79.3, Expect=1e-14]} {Celegans: WBGene00021846, ztf-23, Zinc finger putative Transcription Factor family, [Score=63.5, Expect=5e-10]} {Smed: dd_Smed_v6_5177_0_1, dd_Smed_v6_5177_0_1, [RH, Score=201, Expect=3e-52]} {RNA1509_11185} {RNA1310_1102.2, RNA1509_11185} {RNA1509_11185, RNA815_1398}
11. MligTC455_38222 10 0.21 Mlig455_020659

Neo: -

Age: -

 0.967 - - - 0.967 - - Mlig455_020659 {REF} {Length: 1868} {NoTransDecoderORF} {RNA1509_57328} {RNA1310_4461} {RNA815_2341}
12. MligTC455_17698 60 1.24 Mlig455_043407

Neo: -

Age: -

 0.963 - - - 0.963 - - Mlig455_043407 {REF} {Length: 2632} {NoTransDecoderORF} {RNA1509_38864} {RNA1310_23415} {RNA815_19995}
13. MligTC455_09549 27 0.56 Mlig455_020376, Mlig455_020436

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=3.308

 0.955 - - - 0.955 - -

Mlig455_020376 {REF} {Length: 2681} {Pfam: Domain of unknown function (DUF4337) [PF14235.8, score=21.6]} {RNA1509_43025} {RNA1310_31813} {RNA815_27771}

Mlig455_020436 {REF} {Length: 2495} {Pfam: Domain of unknown function (DUF4337) [PF14235.8, score=21.7]} {RNA1509_43025} {RNA1310_83898} {RNA815_27771}
14. MligTC455_17699 65 1.36 Mlig455_043426

Neo: -

Age: Up-Down-Down

 0.954 - - - 0.954 - - Mlig455_043426 {REF} {Length: 3824} {RNA1509_38864} {RNA1310_23415, RNA1509_38864} {RNA1509_38864, RNA815_19995}
15. MligTC455_27103 78 1.63 Mlig455_005338, Mlig455_006418

Neo: -

Age: -

Region-enriched R4: 3.778/0.00120

 0.954 - - - 0.954 - -

Mlig455_005338 {REF} {Length: 1348} {TRANSSPLICED} {Pfam: GIY-YIG catalytic domain [PF01541.26, score=30.8]} {Smed: dd_Smed_v6_129_2_1, dd_Smed_v6_129_2_1, [Score=46.6, Expect=3e-06]} {RNA1509_56237} {RNA1310_26348.2} {RNA815_26049}

Mlig455_006418 {REF} {Length: 3677} {RNA1509_35846} {RNA1310_9600.1} {RNA815_3985.1}
16. MligTC455_21145 21 0.44 Mlig455_027825

Neo: -

Age: -

 0.953 - - - 0.953 - - Mlig455_027825 {REF} {Length: 337} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_32404} {RNA1310_72214} {RNA815_47584}
17. MligTC455_35397 3743 77.98 Mlig455_067670

Neo: -

Age: logFC(26M/2M)=-0.208

 TPM4 0.953 - - - 0.953 - - Mlig455_067670 {REF} {Length: 1348} {Pfam: Tropomyosin [PF00261.22, score=61.8]} {Human: ENSG00000167460, TPM4, tropomyosin 4, [Score=48.1, Expect=6e-08]; ENSG00000143549, TPM3, tropomyosin 3, [Score=46.2, Expect=1e-06]} {Mouse: ENSMUSG00000031799, Tpm4, tropomyosin 4, [Score=45.4, Expect=1e-06]; ENSMUSG00000027940, Tpm3, tropomyosin 3, gamma, [Score=45.4, Expect=1e-06]; ENSMUSG00000032366, Tpm1, tropomyosin 1, alpha, [Score=45.1, Expect=2e-06]} {Dmel: FBgn0004117, Tm2, Tropomyosin 2, [Score=48.5, Expect=1e-07]} {Celegans: WBGene00002978, lev-11, Tropomyosin isoforms a/b/d/f, [Score=62.8, Expect=1e-13]} {Smed: dd_Smed_v6_405_0_1, dd_Smed_v6_405_0_1, [Score=59.3, Expect=9e-12]} {RNA1509_38937, RNA1509_47396, RNA1509_54612} {RNA1310_20148, RNA1509_38937, RNA1509_47396} {RNA1509_38937, RNA1509_47396, RNA815_9055.2}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA