Data search
Results for MligTC455_48200
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_48200 | 5445 | 113.43 | Mlig455_036804, Mlig455_052940, Mlig455_053010 | Neo: - Age: - |
Mlig455_036804 {REF} {Length: 2320} {RNA1509_3788} {RNA1310_16652, RNA1509_3788} {RNA1509_3788, RNA815_6668} Mlig455_052940 {REF} {Length: 1832} {RNA1509_3788} {RNA1310_16652} {RNA815_6668} Mlig455_053010 {REF} {Length: 1919} {RNA1509_3788} {RNA1310_16652} {RNA815_6668} |
Cumulative graph for MligTC455_48200
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -0.993 | 6.789 | 0.06418 | 0.57473 | |
| RegionR2 | -0.177 | 6.789 | 0.57354 | 0.93205 | |
| RegionR3 | 0.074 | 6.789 | 0.78501 | 1.00000 | |
| RegionR4 | 0.357 | 6.789 | 0.28161 | 0.58957 | |
| RegionR5 | 0.132 | 6.789 | 0.62330 | 0.97807 | |
| RegionR6 | 0.265 | 6.789 | 0.32665 | 0.91465 | |
| RegionR7 | 0.087 | 6.789 | 0.76918 | 1.00000 | |
| RegionR8 | 0.256 | 6.789 | 0.44219 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 1.029 | 6.789 | 0.09919 | 0.81498 | |
| RegenerationR2 | -0.644 | 6.789 | 0.05778 | 0.39534 | |
| RegenerationR3 | -0.242 | 6.789 | 0.47989 | 0.84959 | |
| RegenerationR4 | -0.18 | 6.789 | 0.61721 | 0.91978 | |
| RegenerationR5 | -0.353 | 6.789 | 0.29540 | 0.72268 | |
| RegenerationR6 | -0.179 | 6.789 | 0.60330 | 0.87012 | |
| RegenerationBL | 0.295 | 6.789 | 0.33645 | 0.70303 | |
| RegenerationTP | 0.602 | 6.789 | 0.06465 | 0.41055 |
Genes with expression patterns similar to MligTC455_48200
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_48200 | 5445 | 113.43 | Mlig455_036804, Mlig455_052940, Mlig455_053010 | Neo: - Age: - |
6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_036804 {REF} {Length: 2320} {RNA1509_3788} {RNA1310_16652, RNA1509_3788} {RNA1509_3788, RNA815_6668} Mlig455_052940 {REF} {Length: 1832} {RNA1509_3788} {RNA1310_16652} {RNA815_6668} Mlig455_053010 {REF} {Length: 1919} {RNA1509_3788} {RNA1310_16652} {RNA815_6668} |
|
| 2. | MligTC455_23760 | 1776 | 37 | Mlig455_070910 | Neo: - |
CNN3 | 1.726 | - | - | - | 0.965 | - | 0.761 | Mlig455_070910 {REF} {Length: 2340} {Pfam: Calponin family repeat [PF00402.20, score=183.7]; Calponin homology (CH) domain [PF00307.33, score=70.1]} {Human: ENSG00000117519, CNN3, calponin 3, [RH, Score=149, Expect=2e-41]; ENSG00000064666, CNN2, calponin 2, [RH, Score=149, Expect=9e-42]} {Mouse: ENSMUSG00000004665, Cnn2, calponin 2, [RH, Score=154, Expect=7e-44]; ENSMUSG00000053931, Cnn3, calponin 3, acidic, [RH, Score=147, Expect=9e-41]} {Dmel: FBgn0035499, Chd64, [Score=119, Expect=6e-32]} {Celegans: WBGene00000777, cpn-1, CPN-1; CalPoNin, [Score=94.4, Expect=8e-23]} {Smed: dd_Smed_v6_333_0_1, dd_Smed_v6_333_0_1, [RH, Score=436, Expect=2e-153]} {RNA1509_2360} {RNA1310_23676} {RNA815_3937.2} |
| 3. | MligTC455_40536 | 837 | 17.43 | Mlig455_045210 | Neo: - Age: Down-Up-Up |
GID4 | 0.971 | - | - | - | - | - | 0.971 | Mlig455_045210 {REF} {Length: 575} {TRANSSPLICED} {Pfam: Vacuolar import and degradation protein [PF09783.11, score=163.7]} {Human: ENSG00000141034, GID4, GID complex subunit 4 homolog, [RH, Score=197, Expect=1e-62]} {Mouse: ENSMUSG00000018415, Gid4, GID complex subunit 4, VID24 homolog, [RH, Score=199, Expect=8e-65]} {Smed: dd_Smed_v6_2974_0_1, dd_Smed_v6_2974_0_1, [RH, Score=113, Expect=2e-31]} {RNA1509_43603} {RNA1310_19703.1} {RNA815_17188.1} |
| 4. | MligTC455_50951 | 5451 | 113.55 | Mlig455_010086 | Neo: - Age: - Region-enriched R5: 1.116/0.00014 |
SSR2 | 0.97 | - | - | - | 0.970 | - | - | Mlig455_010086 {REF} {Length: 1316} {TRANSSPLICED} {Pfam: Translocon-associated protein beta (TRAPB) [PF05753.16, score=172.0]} {Human: ENSG00000163479, SSR2, signal sequence receptor subunit 2, [RH, Score=164, Expect=4e-51]} {Mouse: ENSMUSG00000041355, Ssr2, signal sequence receptor, beta, [RH, Score=159, Expect=2e-49]} {Celegans: WBGene00020216, trap-2, Translocon-associated protein subunit beta, [Score=90.5, Expect=9e-23]} {Smed: dd_Smed_v6_1759_0_1, dd_Smed_v6_1759_0_1, [Score=153, Expect=3e-47]} {RNA1509_2868, RNA1509_6196} {RNA1310_18208.1, RNA1509_6196} {RNA1509_6196, RNA815_11531} |
| 5. | MligTC455_50858 | 587 | 12.23 | Mlig455_007072 | Neo: - Age: logFC(26M/2M)=-0.726 |
EIF5 | 0.959 | - | - | - | - | - | 0.959 | Mlig455_007072 {REF} {Length: 2213} {TRANSSPLICED} {Pfam: Domain found in IF2B/IF5 [PF01873.19, score=128.6]; eIF4-gamma/eIF5/eIF2-epsilon [PF02020.20, score=61.2]} {Human: ENSG00000100664, EIF5, eukaryotic translation initiation factor 5, [Score=286, Expect=2e-91]} {Mouse: ENSMUSG00000021282, Eif5, eukaryotic translation initiation factor 5, [RH, Score=211, Expect=2e-63]} {Dmel: FBgn0030719, eIF5, eukaryotic translation initiation factor 5, [Score=288, Expect=4e-92]} {Celegans: WBGene00016496, C37C3.2, Eukaryotic translation initiation factor 5, [RH, Score=276, Expect=3e-88]} {Smed: dd_Smed_v6_2267_0_1, dd_Smed_v6_2267_0_1, [RH, Score=194, Expect=8e-58]} {RNA1509_2860} {RNA1310_1097.1} {RNA815_11901.1} |
| 6. | MligTC455_51068 | 640 | 13.33 | Mlig455_047605 | Neo: - Age: - Region-enriched R3: 1.450/0.00092 |
0.959 | - | - | - | - | - | 0.959 | Mlig455_047605 {REF} {Length: 2440} {Pfam: Low-density lipoprotein receptor domain class A [PF00057.20, score=26.2]} {Smed: dd_Smed_v6_2114_0_1, dd_Smed_v6_2114_0_1, [RH, Score=132, Expect=2e-36]} {RNA1509_4047} {RNA1310_27835.1} {RNA815_11823} | |
| 7. | MligTC455_45212 | 287 | 5.97 | Mlig455_023937 | Neo: - Age: - |
TFAP4 | 0.95 | - | - | - | - | - | 0.950 | Mlig455_023937 {REF} {Length: 2526} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=67.6]} {Human: ENSG00000090447, TFAP4, transcription factor AP-4, [RH, Score=90.5, Expect=1e-19]} {Mouse: ENSMUSG00000005718, Tfap4, transcription factor AP4, [RH, Score=90.9, Expect=6e-20]} {Dmel: FBgn0001994, crp, cropped, [RH, Score=92.8, Expect=3e-20]} {Celegans: WBGene00001955, hlh-11, Helix-loop-helix protein 11, [RH, Score=83.2, Expect=3e-17]} {Smed: dd_Smed_v6_8205_0_1, dd_Smed_v6_8205_0_1, [RH, Score=90.9, Expect=2e-20]} {RNA1509_12849, RNA1509_21993} {RNA1310_9423.1, RNA1509_21993} {RNA1509_21993, RNA815_7350.2} |
Berezikov Lab - 2020-2021 © ERIBA