TomoSeq data search

Data search

Results for MligTC455_48493

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_48493

942

19.63

Mlig455_041636

Neo: -

Age: -

DDX42

Mlig455_041636 {REF} {Length: 2613} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=158.9]; Helicase conserved C-terminal domain [PF00271.33, score=92.3]} {Human: ENSG00000198231, DDX42, DEAD-box helicase 42, [RH, Score=694, Expect=0.0]} {Mouse: ENSMUSG00000020705, Ddx42, DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, [RH, Score=697, Expect=0.0]} {Dmel: FBgn0036104, CG6418, [RH, Score=704, Expect=0.0]} {Celegans: WBGene00008119, C46F11.4, [RH, Score=604, Expect=0.0]} {Smed: dd_Smed_v6_5205_0_1, dd_Smed_v6_5205_0_1, [RH, Score=773, Expect=0.0]} {RNA1509_5281, RNA1509_54259} {RNA1310_7512, RNA1509_5281, RNA1509_54259} {RNA1509_5281, RNA1509_54259, RNA815_2556}

Cumulative graph for MligTC455_48493

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.31	4.579	0.32602	0.97428
RegionR2	0.304	4.579	0.51291	0.88987
RegionR3	0.274	4.579	0.48074	0.98285
RegionR4	0.359	4.579	0.42093	0.74914
RegionR5	0.63	4.579	0.06995	0.23809
RegionR6	-0.174	4.579	0.68243	1.00000
RegionR7	0.027	4.579	0.95766	1.00000
RegionR8	-0.11	4.579	0.87439	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.295	4.579	0.88888	1.00000
RegenerationR2	0.411	4.579	0.24411	0.69194
RegenerationR3	0.4	4.579	0.31260	0.74304
RegenerationR4	0.682	4.579	0.09265	0.47476
RegenerationR5	0.284	4.579	0.43361	0.82039
RegenerationR6	1.097	4.579	0.00730	0.10469
RegenerationBL	0.589	4.579	0.21263	0.55671
RegenerationTP	0.207	4.579	0.70705	1.00000

Genes with expression patterns similar to MligTC455_48493

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_48493	942	19.63	Mlig455_041636	Neo: - Age: -	DDX42	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_041636 {REF} {Length: 2613} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=158.9]; Helicase conserved C-terminal domain [PF00271.33, score=92.3]} {Human: ENSG00000198231, DDX42, DEAD-box helicase 42, [RH, Score=694, Expect=0.0]} {Mouse: ENSMUSG00000020705, Ddx42, DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, [RH, Score=697, Expect=0.0]} {Dmel: FBgn0036104, CG6418, [RH, Score=704, Expect=0.0]} {Celegans: WBGene00008119, C46F11.4, [RH, Score=604, Expect=0.0]} {Smed: dd_Smed_v6_5205_0_1, dd_Smed_v6_5205_0_1, [RH, Score=773, Expect=0.0]} {RNA1509_5281, RNA1509_54259} {RNA1310_7512, RNA1509_5281, RNA1509_54259} {RNA1509_5281, RNA1509_54259, RNA815_2556}
2.	MligTC455_48492	928	19.33	Mlig455_041616	Neo: Int S/G2/M Age: Down-Down-Up	DDX42	5.954	1.000	0.996	0.994	0.987	0.981	0.996	Mlig455_041616 {REF} {Length: 2637} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=159.2]; Helicase conserved C-terminal domain [PF00271.33, score=92.2]; Type III restriction enzyme, res subunit [PF04851.17, score=19.2]} {Human: ENSG00000198231, DDX42, DEAD-box helicase 42, [RH, Score=693, Expect=0.0]} {Mouse: ENSMUSG00000020705, Ddx42, DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, [RH, Score=694, Expect=0.0]} {Dmel: FBgn0036104, CG6418, [RH, Score=706, Expect=0.0]} {Celegans: WBGene00008119, C46F11.4, [RH, Score=602, Expect=0.0]} {Smed: dd_Smed_v6_5205_0_1, dd_Smed_v6_5205_0_1, [RH, Score=768, Expect=0.0]} {RNA1509_54259} {RNA1310_7512} {RNA815_2556}
3.	MligTC455_34054	2761	57.51	Mlig455_000070, Mlig455_063736	Neo: - Age: -	EIF4G3	1.696	0.743	-	-	0.953	-	-	Mlig455_000070 {REF} {Length: 5242} {TRANSSPLICED} {Pfam: MIF4G domain [PF02854.21, score=107.1]; MA3 domain [PF02847.19, score=25.3]} {Human: ENSG00000075151, EIF4G3, eukaryotic translation initiation factor 4 gamma 3, [RH, Score=325, Expect=5e-90]} {Mouse: ENSMUSG00000028760, Eif4g3, eukaryotic translation initiation factor 4 gamma, 3, [RH, Score=339, Expect=4e-95]} {Dmel: FBgn0010488, NAT1, [Score=153, Expect=5e-37]} {Smed: dd_Smed_v6_3720_0_1, dd_Smed_v6_3720_0_1, [RH, Score=224, Expect=1e-59]} {RNA1509_35483} {RNA1310_1386.1} {RNA815_242.1} Mlig455_063736 {REF} {Length: 5197} {TRANSSPLICED} {Pfam: MIF4G domain [PF02854.21, score=107.1]; MA3 domain [PF02847.19, score=25.3]} {Human: ENSG00000075151, EIF4G3, eukaryotic translation initiation factor 4 gamma 3, [RH, Score=322, Expect=3e-89]} {Mouse: ENSMUSG00000028760, Eif4g3, eukaryotic translation initiation factor 4 gamma, 3, [RH, Score=340, Expect=2e-95]} {Dmel: FBgn0010488, NAT1, [Score=153, Expect=6e-37]} {Smed: dd_Smed_v6_3720_0_1, dd_Smed_v6_3720_0_1, [RH, Score=224, Expect=1e-59]} {RNA1509_35483} {RNA1310_1386.1} {RNA815_242.1}
4.	MligTC455_47242	296	6.17	Mlig455_003663	Neo: - Age: -		1.688	-	-	-	0.952	-	0.736	Mlig455_003663 {REF} {Length: 1025} {TRANSSPLICED} {RNA1509_31838} {RNA1310_35713, RNA1509_31838} {RNA1509_31838, RNA815_10136}
5.	MligTC455_45967	455	9.48	Mlig455_057177	Neo: Int S/G2/M Age: Down-Up-Down	SMARCE1	1.664	0.710	-	-	0.954	-	-	Mlig455_057177 {REF} {Length: 2382} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=55.5]; HMG-box domain [PF09011.12, score=23.4]} {Human: ENSG00000073584, SMARCE1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, [Score=117, Expect=3e-29]} {Mouse: ENSMUSG00000037935, Smarce1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, [Score=118, Expect=5e-29]} {Dmel: FBgn0030093, Bap111, Brahma associated protein 111kD, [Score=101, Expect=7e-23]} {Celegans: WBGene00022182, swsn-3, SWI/SNF nucleosome remodeling complex component, [Score=85.9, Expect=2e-18]} {Smed: dd_Smed_v6_5085_0_1, dd_Smed_v6_5085_0_1, [Score=149, Expect=4e-39]} {RNA1509_34958, RNA1509_53246} {RNA1310_8835.1, RNA1509_34958} {RNA1509_34958, RNA815_5568}
6.	MligTC455_03567	922	19.22	Mlig455_058749	Neo: - Age: Up-Up-Down	DDX46	0.975	-	-	-	0.975	-	-	Mlig455_058749 {REF} {Length: 4831} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=165.7]; Helicase conserved C-terminal domain [PF00271.33, score=91.1]} {Human: ENSG00000145833, DDX46, DEAD-box helicase 46, [RH, Score=762, Expect=0.0]} {Mouse: ENSMUSG00000021500, Ddx46, DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, [RH, Score=766, Expect=0.0]} {Dmel: FBgn0030631, CG6227, [RH, Score=731, Expect=0.0]} {Celegans: WBGene00018776, F53H1.1, [RH, Score=620, Expect=0.0]} {Smed: dd_Smed_v6_3181_0_1, dd_Smed_v6_3181_0_1, [RH, Score=782, Expect=0.0]} {RNA1509_14771, RNA1509_40667, RNA1509_8628} {RNA1310_1133.1, RNA1509_40667, RNA1509_8628} {RNA1509_40667, RNA1509_8628, RNA815_5757}
7.	MligTC455_17764	3081	64.19	Mlig455_031905, Mlig455_032003, Mlig455_044702, Mlig455_068289, Mlig455_068292	Neo: Int S/G2/M Age: logFC(26M/2M)=0.321 Region-enriched R4: 1.161/0.02884	MRPS2	0.975	-	-	-	0.975	-	-	Mlig455_031905 {REF} {Length: 1276} {TRANSSPLICED} {Pfam: Ribosomal protein S2 [PF00318.22, score=113.4]} {Human: ENSG00000122140, MRPS2, mitochondrial ribosomal protein S2, [RH, Score=204, Expect=7e-63]} {Mouse: ENSMUSG00000035772, Mrps2, mitochondrial ribosomal protein S2, [RH, Score=214, Expect=4e-67]} {Dmel: FBgn0031639, mRpS2, mitochondrial ribosomal protein S2, [RH, Score=209, Expect=7e-66]} {Celegans: WBGene00020718, mrps-2, Mitochondrial Ribosomal Protein, Small, [RH, Score=169, Expect=2e-50]} {Smed: dd_Smed_v6_3836_0_1, dd_Smed_v6_3836_0_1, [RH, Score=211, Expect=8e-67]} {RNA1509_22245} {RNA1310_26022} {RNA815_12011} Mlig455_032003 {REF} {Length: 1910} {TRANSSPLICED} {Pfam: Ribosomal protein S2 [PF00318.22, score=111.4]} {Human: ENSG00000122140, MRPS2, mitochondrial ribosomal protein S2, [RH, Score=202, Expect=3e-62]} {Mouse: ENSMUSG00000035772, Mrps2, mitochondrial ribosomal protein S2, [RH, Score=216, Expect=6e-68]} {Dmel: FBgn0031639, mRpS2, mitochondrial ribosomal protein S2, [RH, Score=208, Expect=3e-65]} {Celegans: WBGene00020718, mrps-2, Mitochondrial Ribosomal Protein, Small, [RH, Score=167, Expect=8e-50]} {Smed: dd_Smed_v6_3836_0_1, dd_Smed_v6_3836_0_1, [RH, Score=208, Expect=5e-66]} {RNA1509_22245, RNA1509_43905} {RNA1310_26022, RNA1509_43905} {RNA1509_43905, RNA815_12011} Mlig455_044702 {REF} {Length: 1338} {RNA1509_22245} {RNA1310_26022} {RNA815_12011} Mlig455_068289 {REF} {Length: 1354} {TRANSSPLICED} {Pfam: Ribosomal protein S2 [PF00318.22, score=111.5]} {Human: ENSG00000122140, MRPS2, mitochondrial ribosomal protein S2, [RH, Score=201, Expect=4e-62]} {Mouse: ENSMUSG00000035772, Mrps2, mitochondrial ribosomal protein S2, [RH, Score=211, Expect=7e-66]} {Dmel: FBgn0031639, mRpS2, mitochondrial ribosomal protein S2, [RH, Score=206, Expect=1e-64]} {Celegans: WBGene00020718, mrps-2, Mitochondrial Ribosomal Protein, Small, [RH, Score=167, Expect=1e-49]} {Smed: dd_Smed_v6_3836_0_1, dd_Smed_v6_3836_0_1, [RH, Score=209, Expect=3e-66]} {RNA1509_22245} {RNA1310_5895.1} {RNA815_12011} Mlig455_068292 {REF} {Length: 1298} {Pfam: Ribosomal protein S2 [PF00318.22, score=113.4]} {Human: ENSG00000122140, MRPS2, mitochondrial ribosomal protein S2, [RH, Score=204, Expect=7e-63]} {Mouse: ENSMUSG00000035772, Mrps2, mitochondrial ribosomal protein S2, [RH, Score=214, Expect=4e-67]} {Dmel: FBgn0031639, mRpS2, mitochondrial ribosomal protein S2, [RH, Score=209, Expect=7e-66]} {Celegans: WBGene00020718, mrps-2, Mitochondrial Ribosomal Protein, Small, [RH, Score=169, Expect=2e-50]} {Smed: dd_Smed_v6_3836_0_1, dd_Smed_v6_3836_0_1, [RH, Score=211, Expect=8e-67]} {RNA1509_22245} {RNA1310_26022} {RNA815_12011}
8.	MligTC455_50033	644	13.41	Mlig455_018586	Neo: - Age: -	SLC30A6	0.964	-	-	-	0.964	-	-	Mlig455_018586 {REF} {Length: 1558} {TRANSSPLICED} {Pfam: Cation efflux family [PF01545.23, score=58.6]} {Human: ENSG00000152683, SLC30A6, solute carrier family 30 member 6, [RH, Score=292, Expect=4e-94]} {Mouse: ENSMUSG00000024069, Slc30a6, solute carrier family 30 (zinc transporter), member 6, [RH, Score=290, Expect=2e-93]} {Dmel: FBgn0037875, ZnT86D, Zinc transporter 86D, [Score=54.3, Expect=1e-07]} {Celegans: WBGene00006590, toc-1, Similar to Transporter Of divalent Cations, [RH, Score=176, Expect=4e-50]} {Smed: dd_Smed_v6_7908_0_4, dd_Smed_v6_7908_0_4, [RH, Score=277, Expect=8e-90]} {RNA1509_19597} {RNA1310_20716, RNA1509_19597} {RNA1509_19597, RNA815_8815}
9.	MligTC455_35951	426	8.87	Mlig455_011028	Neo: Irradiation Age: -	SMC3	0.956	-	-	-	0.956	-	-	Mlig455_011028 {REF} {Length: 5295} {TRANSSPLICED} {Pfam: RecF/RecN/SMC N terminal domain [PF02463.21, score=166.8]; SMC proteins Flexible Hinge Domain [PF06470.15, score=78.8]} {Human: ENSG00000108055, SMC3, structural maintenance of chromosomes 3, [Score=1145, Expect=0.0]} {Mouse: ENSMUSG00000024974, Smc3, structural maintenance of chromosomes 3, [Score=1147, Expect=0.0]} {Dmel: FBgn0015615, SMC3, Structural maintenance of chromosomes 3, [Score=1035, Expect=0.0]} {Celegans: WBGene00004873, smc-3, Structural maintenance of chromosomes protein 3, [Score=749, Expect=0.0]} {Smed: dd_Smed_v6_3809_0_1, dd_Smed_v6_3809_0_1, [RH, Score=1405, Expect=0.0]} {RNA1509_2545, RNA1509_54608} {RNA1310_2315.1, RNA1509_54608} {RNA1509_54608, RNA815_671}
10.	MligTC455_24879	857	17.85	Mlig455_069172	Neo: Int S/G2/M Age: -	LIMS2	0.955	-	-	-	0.955	-	-	Mlig455_069172 {REF} {Length: 2066} {TRANSSPLICED} {Pfam: LIM domain [PF00412.24, score=202.3]} {Human: ENSG00000072163, LIMS2, LIM zinc finger domain containing 2, [RH, Score=369, Expect=6e-126]; ENSG00000256977, LIMS3, LIM zinc finger domain containing 3, [RH, Score=368, Expect=4e-125]; ENSG00000256671, LIMS4, LIM zinc finger domain containing 4, [RH, Score=368, Expect=4e-125]; ENSG00000169756, LIMS1, LIM zinc finger domain containing 1, [RH, Score=365, Expect=2e-124]} {Mouse: ENSMUSG00000019920, Lims1, LIM and senescent cell antigen-like domains 1, [RH, Score=372, Expect=1e-126]; ENSMUSG00000024395, Lims2, LIM and senescent cell antigen like domains 2, [RH, Score=358, Expect=4e-122]} {Dmel: FBgn0020249, stck, steamer duck, [RH, Score=387, Expect=2e-133]} {Celegans: WBGene00006826, unc-97, LIM domain-containing protein unc-97, [RH, Score=377, Expect=1e-129]} {Smed: dd_Smed_v6_2476_0_1, dd_Smed_v6_2476_0_1, [RH, Score=427, Expect=2e-149]} {RNA1509_58964} {RNA1310_13680.2} {RNA815_4936.1}

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