M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_49161

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_49161 139 2.90 Mlig455_062367

Neo: Irradiation

Age: -

 Mlig455_062367 {REF} {Length: 4268} {TRANSSPLICED} {Pfam: Phytochelatin synthase [PF05023.16, score=275.1]} {Celegans: WBGene00003960, pcs-1, PhytoChelatin Synthase, [RH, Score=244, Expect=3e-75]} {Smed: dd_Smed_v6_11700_0_1, dd_Smed_v6_11700_0_1, [RH, Score=300, Expect=1e-96]} {RNA1509_31673} {RNA1310_2142} {RNA815_14799}

Cumulative graph for MligTC455_49161

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.956 2.28 0.64288 1.00000
RegionR2 1.909 2.28 0.06388 0.30551
RegionR3 -0.239 2.28 0.79106 1.00000
RegionR4 -1.851 2.28 0.08168 0.26848
RegionR5 1.424 2.28 0.02067 0.09934
RegionR6 0.026 2.28 0.96253 1.00000
RegionR7 1.398 2.28 0.14374 0.70720
RegionR8 -1.711 2.28 0.39767 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.704 2.28 0.77072 1.00000
RegenerationR2 1.427 2.28 0.05235 0.37737
RegenerationR3 1.553 2.28 0.09721 0.49918
RegenerationR4 1.631 2.28 0.09027 0.47006
RegenerationR5 1.069 2.28 0.11265 0.50657
RegenerationR6 1.426 2.28 0.15503 0.48140
RegenerationBL 2.316 2.28 0.06997 0.30818
RegenerationTP 2.132 2.28 0.12500 0.53552


Genes with expression patterns similar to MligTC455_49161

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_49161 139 2.9 Mlig455_062367

Neo: Irradiation

Age: -

 5 1.000 1.000 1.000 - 1.000 1.000 Mlig455_062367 {REF} {Length: 4268} {TRANSSPLICED} {Pfam: Phytochelatin synthase [PF05023.16, score=275.1]} {Celegans: WBGene00003960, pcs-1, PhytoChelatin Synthase, [RH, Score=244, Expect=3e-75]} {Smed: dd_Smed_v6_11700_0_1, dd_Smed_v6_11700_0_1, [RH, Score=300, Expect=1e-96]} {RNA1509_31673} {RNA1310_2142} {RNA815_14799}
2. MligTC455_49160 129 2.68 Mlig455_062354

Neo: -

Age: -

 2.982 0.999 0.999 - - - 0.984 Mlig455_062354 {REF} {Length: 383} {NoTransDecoderORF} {RNA1509_40326} {RNA1310_30049}
3. MligTC455_20489 375 7.81 Mlig455_060460

Neo: Irradiation

Age: -

Region-enriched R5: 2.186/0.00000

 2.762 0.894 0.918 - - - 0.950 Mlig455_060460 {REF} {Length: 2794} {TRANSSPLICED} {RNA1509_11860} {RNA1310_18645} {RNA815_7481}
4. MligTC455_49162 312 6.51 Mlig455_062387

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=2.565

 1.823 0.974 0.849 - - - - Mlig455_062387 {REF} {Length: 2698} {RNA1509_34245} {RNA1310_30049, RNA1509_34245} {RNA1509_34245, RNA815_18326}
5. MligTC455_51299 435 9.06 Mlig455_004044

Neo: -

Age: -

 NCOR1 1.744 0.786 - - - - 0.958 Mlig455_004044 {REF} {Length: 5997} {TRANSSPLICED} {Pfam: Myb-like DNA-binding domain [PF00249.33, score=23.3]} {Human: ENSG00000141027, NCOR1, nuclear receptor corepressor 1, [Score=179, Expect=2e-44]; ENSG00000196498, NCOR2, nuclear receptor corepressor 2, [Score=174, Expect=4e-43]} {Mouse: ENSMUSG00000018501, Ncor1, nuclear receptor co-repressor 1, [Score=178, Expect=2e-44]; ENSMUSG00000029478, Ncor2, nuclear receptor co-repressor 2, [Score=177, Expect=5e-44]} {Dmel: FBgn0265523, Smr, Smrter, [Score=171, Expect=3e-42]} {Smed: dd_Smed_v6_7709_0_1, dd_Smed_v6_7709_0_1, [Score=184, Expect=8e-47]} {RNA1509_6957} {RNA1310_15304.1} {RNA815_1593}
6. MligTC455_31537 21 0.44 Mlig455_029620, Mlig455_070637

Neo: -

Age: -

 GVQW3 1.688 0.737 - - - - 0.951

Mlig455_029620 {REF} {Length: 1393} {RNA1509_8096} {RNA1310_1771} {RNA815_801}

Mlig455_070637 {REF} {Length: 894} {Human: ENSG00000179240, GVQW3, GVQW motif containing 3, [Score=48.5, Expect=9e-07]} {RNA1509_8096} {RNA1310_3502} {RNA815_801}
7. MligTC455_48467 443 9.23 Mlig455_001867

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.727/0.00001

 TRIM27 1.677 - 0.955 - - - 0.722 Mlig455_001867 {REF} {Length: 3460} {TRANSSPLICED} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=24.1]; zinc finger of C3HC4-type, RING [PF15227.8, score=22.3]} {Human: ENSG00000233948, TRIM27, tripartite motif containing 27, [RH, Score=51.2, Expect=3e-06]; ENSG00000237462, TRIM27, tripartite motif containing 27, [RH, Score=51.2, Expect=3e-06]} {Mouse: ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=53.1, Expect=2e-06]} {RNA1509_29275} {RNA1310_6643, RNA1509_29275} {RNA1509_29275, RNA815_6552}
8. MligTC455_15629 415 8.65 Mlig455_004619

Neo: Neoblast, stringent

Age: -

Region-enriched R5: 1.273/0.00412

Regeneration-upregulated R3: 2.136

Regeneration-enriched R3: 2.136

 MCM2 0.965 - - - - - 0.965 Mlig455_004619 {REF} {Length: 4217} {TRANSSPLICED} {Pfam: MCM P-loop domain [PF00493.25, score=330.2]; MCM OB domain [PF17207.5, score=130.7]; MCM AAA-lid domain [PF17855.3, score=109.4]; Mini-chromosome maintenance protein 2 [PF12619.10, score=55.8]; MCM N-terminal domain [PF14551.8, score=50.1]; Magnesium chelatase, subunit ChlI [PF01078.23, score=34.7]; AAA domain (dynein-related subfamily) [PF07728.16, score=18.6]} {Human: ENSG00000073111, MCM2, minichromosome maintenance complex component 2, [RH, Score=1056, Expect=0.0]} {Mouse: ENSMUSG00000002870, Mcm2, minichromosome maintenance complex component 2, [RH, Score=1046, Expect=0.0]} {Dmel: FBgn0014861, Mcm2, Minichromosome maintenance 2, [RH, Score=991, Expect=0.0]} {Celegans: WBGene00003154, mcm-2, Yeast MCM (Licensing factor) related, [RH, Score=895, Expect=0.0]} {Smed: dd_Smed_v6_7682_0_1, dd_Smed_v6_7682_0_1, [RH, Score=915, Expect=0.0]} {RNA1509_3101} {RNA1310_746.2} {RNA815_2497}
9. MligTC455_50605 192 4.01 Mlig455_049014

Neo: Irradiation

Age: -

 CDC45 0.962 - - - - - 0.962 Mlig455_049014 {REF} {Length: 2627} {TRANSSPLICED} {Pfam: CDC45-like protein [PF02724.16, score=221.4]} {Human: ENSG00000093009, CDC45, cell division cycle 45, [RH, Score=278, Expect=5e-86]} {Mouse: ENSMUSG00000000028, Cdc45, cell division cycle 45, [RH, Score=265, Expect=6e-81]} {Dmel: FBgn0026143, CDC45L, [RH, Score=273, Expect=4e-84]} {Celegans: WBGene00009372, evl-18, [RH, Score=118, Expect=6e-28]} {Smed: dd_Smed_v6_16942_0_1, dd_Smed_v6_16942_0_1, [RH, Score=210, Expect=1e-60]} {RNA1509_27402} {RNA1310_23745.1, RNA1509_27402} {RNA1509_27402, RNA815_20917}
10. MligTC455_52782 103 2.15 Mlig455_020826

Neo: -

Age: Down-Up-Down

Region-enriched R5: 3.206/0.01220

 RCOR3 0.962 - - - - - 0.962 Mlig455_020826 {REF} {Length: 3804} {Pfam: Myb-like DNA-binding domain [PF00249.33, score=64.4]; Myb DNA-binding like [PF15963.7, score=26.6]; Myb-like DNA-binding domain [PF13921.8, score=26.1]; ELM2 domain [PF01448.26, score=22.8]} {Human: ENSG00000117625, RCOR3, REST corepressor 3, [RH, Score=247, Expect=8e-77]} {Mouse: ENSMUSG00000037395, Rcor3, REST corepressor 3, [RH, Score=249, Expect=1e-77]; ENSMUSG00000111452, Rcor3, REST corepressor 3, [RH, Score=249, Expect=1e-77]} {Dmel: FBgn0261573, CoRest, [RH, Score=172, Expect=1e-46]} {Celegans: WBGene00010012, saeg-1, Suppressor of activated egl-4 protein 1, [Score=52.0, Expect=6e-07]} {RNA1509_18242} {RNA1310_10015.1} {RNA815_28312.1}
11. MligTC455_35973 279 5.81 Mlig455_026242

Neo: Int S/G2/M

Age: Down-Up-Down, logFC(26M/2M)=-0.470

Region-enriched R5: 2.595/0.00000

 0.959 - - - - - 0.959 Mlig455_026242 {REF} {Length: 2784} {RNA1509_33543} {RNA1310_56537.1} {RNA815_30612.1}
12. MligTC455_52110 160 3.34 Mlig455_009429

Neo: Irradiation

Age: Up-Up-Down

Region-enriched R5: 1.913/0.04747

 PASK 0.959 - - - - - 0.959 Mlig455_009429 {REF} {Length: 4727} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=187.5]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=86.3]; Kinase-like [PF14531.8, score=25.5]; Fungal protein kinase [PF17667.3, score=19.8]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=19.7]} {Human: ENSG00000115687, PASK, PAS domain containing serine/threonine kinase, [RH, Score=301, Expect=4e-86]} {Mouse: ENSMUSG00000026274, Pask, PAS domain containing serine/threonine kinase, [RH, Score=315, Expect=3e-91]} {Dmel: FBgn0034950, Pask, PAS kinase, [RH, Score=304, Expect=2e-89]} {Celegans: WBGene00006814, unc-82, [Score=177, Expect=3e-45]} {Smed: dd_Smed_v6_5328_1_1, dd_Smed_v6_5328_1_1, [Score=167, Expect=4e-45]} {RNA1509_34540, RNA1509_52718} {RNA1310_5405.1, RNA1509_34540, RNA1509_52718} {RNA1509_34540, RNA1509_52718, RNA815_16361.1}
13. MligTC455_36608 754 15.7 Mlig455_016801

Neo: Irradiation

Age: -

 0.958 - - - - - 0.958 Mlig455_016801 {REF} {Length: 5200} {TRANSSPLICED} {Pfam: Septation ring formation regulator, EzrA [PF06160.14, score=17.7]} {RNA1509_5600} {RNA1310_2454.1} {RNA815_1456}
14. MligTC455_37236 261 5.44 Mlig455_068134

Neo: -

Age: -

 0.957 - - - - - 0.957 Mlig455_068134 {REF} {Length: 2437} {TRANSSPLICED} {RNA1509_36044} {RNA1310_22986} {RNA815_10707}
15. MligTC455_36607 751 15.64 Mlig455_016782

Neo: Irradiation

Age: Down-Up-Up, logFC(26M/2M)=0.309

 0.955 - - - - - 0.955 Mlig455_016782 {REF} {Length: 5127} {TRANSSPLICED} {Pfam: Septation ring formation regulator, EzrA [PF06160.14, score=17.7]} {RNA1509_5600} {RNA1310_2454.1} {RNA815_1456}
16. MligTC455_54081 467 9.74 Mlig455_029686

Neo: Irradiation

Age: Down-Up-Down

Region-specific R5: 2.785

Region-enriched R5: 2.356/0.00000

 GFI1 0.954 - - - - - 0.954 Mlig455_029686 {REF} {Length: 2343} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=33.7]; C2H2-type zinc finger [PF13894.8, score=30.7]; Zinc finger C2H2-type, 3 repeats [PF18868.3, score=21.6]} {Human: ENSG00000162676, GFI1, growth factor independent 1 transcriptional repressor, [Score=80.1, Expect=2e-15]; ENSG00000165702, GFI1B, growth factor independent 1B transcriptional repressor, [Score=78.6, Expect=1e-15]} {Mouse: ENSMUSG00000029275, Gfi1, growth factor independent 1 transcription repressor, [Score=81.6, Expect=5e-16]; ENSMUSG00000026815, Gfi1b, growth factor independent 1B, [Score=78.6, Expect=3e-15]} {Dmel: FBgn0051632, sens-2, senseless-2, [Score=86.7, Expect=1e-17]} {Celegans: WBGene00003909, pag-3, Zinc finger protein PAG-3, [Score=81.3, Expect=2e-16]} {Smed: dd_Smed_v6_2946_0_1, dd_Smed_v6_2946_0_1, [RH, Score=183, Expect=1e-51]} {RNA1509_56333} {RNA1310_7337} {RNA815_12480}
17. MligTC455_44244 510 10.63 Mlig455_012399

Neo: Neoblast

Age: -

Region-enriched R5: 1.591/0.00093

 GNG13 0.953 - - - - - 0.953 Mlig455_012399 {REF} {Length: 1964} {TRANSSPLICED} {Pfam: GGL domain [PF00631.24, score=28.8]} {Human: ENSG00000127588, GNG13, G protein subunit gamma 13, [Score=47.0, Expect=1e-06]} {Smed: dd_Smed_v6_11494_0_1, dd_Smed_v6_11494_0_1, [RH, Score=68.2, Expect=4e-13]} {RNA1509_45155} {RNA1310_21070.1} {RNA815_15152}
18. MligTC455_38515 397 8.27 Mlig455_045464

Neo: Neoblast, stringent

Age: logFC(26M/2M)=0.290

Region-enriched R5: 1.652/0.00266

 CAD 0.951 - - - - - 0.951 Mlig455_045464 {REF} {Length: 8528} {TRANSSPLICED} {Pfam: Carbamoyl-phosphate synthase L chain, ATP binding domain [PF02786.19, score=365.9]; Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain [PF02729.23, score=150.0]; Glutamine amidotransferase class-I [PF00117.30, score=140.3]; Carbamoyl-phosphate synthase small chain, CPSase domain [PF00988.24, score=136.6]; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain [PF00185.26, score=97.9]; Carbamoyl-phosphate synthetase large chain, oligomerisation domain [PF02787.21, score=91.5]; ATP-grasp domain [PF02222.24, score=57.9]; MGS-like domain [PF02142.24, score=56.7]; D-ala D-ala ligase C-terminus [PF07478.15, score=55.9]; Amidohydrolase family [PF01979.22, score=50.2]; ATP-grasp in the biosynthetic pathway with Ter operon [PF15632.8, score=43.7]; ATP-grasp domain [PF02655.16, score=24.5]; Peptidase C26 [PF07722.15, score=24.2]; DJ-1/PfpI family [PF01965.26, score=23.3]; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain [PF01071.21, score=21.2]} {Human: ENSG00000084774, CAD, carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase, [RH, Score=2667, Expect=0.0]} {Mouse: ENSMUSG00000013629, Cad, carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase, [RH, Score=2318, Expect=0.0]} {Dmel: FBgn0003189, r, rudimentary, [RH, Score=2589, Expect=0.0]} {Celegans: WBGene00004259, pyr-1, CAD protein Glutamine-dependent carbamoyl-phosphate synthase Aspartate carbamoyltransferase Dihydroorotase, [RH, Score=2159, Expect=0.0]} {Smed: dd_Smed_v6_7167_0_1, dd_Smed_v6_7167_0_1, [RH, Score=2290, Expect=0.0]} {RNA1509_1847, RNA1509_40342} {RNA1310_314.1, RNA1509_1847, RNA1509_40342} {RNA1509_1847, RNA1509_40342, RNA815_114}
19. MligTC455_54082 468 9.75 Mlig455_064909

Neo: Irradiation

Age: -

Region-enriched R5: 2.334/0.00000

 GFI1 0.951 - - - - - 0.951 Mlig455_064909 {REF} {Length: 2558} {Pfam: C2H2-type zinc finger [PF13894.8, score=27.8]; Zinc finger, C2H2 type [PF00096.28, score=26.2]; Zinc finger C2H2-type, 3 repeats [PF18868.3, score=21.7]} {Human: ENSG00000162676, GFI1, growth factor independent 1 transcriptional repressor, [Score=79.3, Expect=4e-15]; ENSG00000165702, GFI1B, growth factor independent 1B transcriptional repressor, [Score=77.8, Expect=3e-15]} {Mouse: ENSMUSG00000029275, Gfi1, growth factor independent 1 transcription repressor, [Score=80.9, Expect=1e-15]; ENSMUSG00000026815, Gfi1b, growth factor independent 1B, [Score=77.8, Expect=6e-15]} {Dmel: FBgn0051632, sens-2, senseless-2, [Score=85.5, Expect=5e-17]} {Celegans: WBGene00003909, pag-3, Zinc finger protein PAG-3, [Score=80.1, Expect=4e-16]} {Smed: dd_Smed_v6_2946_0_1, dd_Smed_v6_2946_0_1, [RH, Score=182, Expect=7e-51]} {RNA1509_4057} {RNA1310_7337} {RNA815_12480}
20. MligTC455_12212 89 1.86 Mlig455_044685

Neo: Irradiation

Age: Up-Down-Down

Region-enriched R5: 4.084/0.00005

 0.95 - - - - - 0.950 Mlig455_044685 {REF} {Length: 3776} {TRANSSPLICED} {Pfam: Myb/SANT-like DNA-binding domain [PF13837.8, score=25.9]; Myb-like DNA-binding domain [PF13921.8, score=19.1]; Myb/SANT-like DNA-binding domain [PF13873.8, score=18.7]} {RNA1509_24862, RNA1509_54105, RNA1509_56945} {RNA1310_24568, RNA1509_24862, RNA1509_54105, RNA1509_56945} {RNA1509_24862, RNA1509_54105, RNA1509_56945, RNA815_11589}
21. MligTC455_35291 234 4.88 Mlig455_027788, Mlig455_063457

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=0.963

Region-enriched R4: 3.530/0.01207
Region-enriched R5: 2.680/0.00642

 TMEM9 0.95 - - - - - 0.950

Mlig455_027788 {REF} {Length: 2035} {TRANSSPLICED} {Pfam: TMEM9 [PF05434.13, score=50.6]} {RNA1509_36378} {RNA1310_37814.1, RNA1509_36378} {RNA1509_36378, RNA815_28046}

Mlig455_063457 {REF} {Length: 2038} {TRANSSPLICED} {Pfam: TMEM9 [PF05434.13, score=65.9]} {Human: ENSG00000116857, TMEM9, transmembrane protein 9, [Score=46.6, Expect=8e-06]} {Celegans: WBGene00020026, R12C12.6, [RH, Score=57.0, Expect=2e-09]} {RNA1509_36378} {RNA1310_37814.1} {RNA815_28046}
22. MligTC455_51185 1073 22.36 Mlig455_031371, Mlig455_056513

Neo: -

Age: Up-Down-Down

Region-enriched R5: 1.008/0.01615

 PLEKHG1 0.95 - - - - - 0.950

Mlig455_031371 {REF} {Length: 5976} {TRANSSPLICED} {Pfam: RhoGEF domain [PF00621.22, score=136.8]} {Human: ENSG00000120278, PLEKHG1, pleckstrin homology and RhoGEF domain containing G1, [RH, Score=241, Expect=6e-64]; ENSG00000126822, PLEKHG3, pleckstrin homology and RhoGEF domain containing G3, [RH, Score=237, Expect=4e-63]} {Mouse: ENSMUSG00000052609, Plekhg3, pleckstrin homology domain containing, family G (with RhoGef domain) member 3, [RH, Score=239, Expect=8e-64]} {Dmel: FBgn0050115, GEFmeso, Guanine nucleotide exchange factor in mesoderm, [RH, Score=201, Expect=6e-52]} {Celegans: WBGene00009337, uig-1, UNC-112-Interacting Guanine nucleotide exchange factor, [RH, Score=191, Expect=3e-49]} {Smed: dd_Smed_v6_4803_0_1, dd_Smed_v6_4803_0_1, [RH, Score=186, Expect=1e-48]} {RNA1509_10688} {RNA1310_1913, RNA1509_10688} {RNA1509_10688, RNA815_10599}

Mlig455_056513 {REF} {Length: 5463} {TRANSSPLICED} {Pfam: RhoGEF domain [PF00621.22, score=135.4]} {Human: ENSG00000120278, PLEKHG1, pleckstrin homology and RhoGEF domain containing G1, [RH, Score=234, Expect=6e-62]; ENSG00000126822, PLEKHG3, pleckstrin homology and RhoGEF domain containing G3, [RH, Score=232, Expect=2e-61]} {Mouse: ENSMUSG00000052609, Plekhg3, pleckstrin homology domain containing, family G (with RhoGef domain) member 3, [RH, Score=233, Expect=6e-62]} {Dmel: FBgn0050115, GEFmeso, Guanine nucleotide exchange factor in mesoderm, [RH, Score=200, Expect=1e-51]} {Celegans: WBGene00009337, uig-1, UNC-112-Interacting Guanine nucleotide exchange factor, [RH, Score=187, Expect=2e-48]} {Smed: dd_Smed_v6_4803_0_1, dd_Smed_v6_4803_0_1, [RH, Score=180, Expect=1e-46]} {RNA1509_10688} {RNA1310_1913} {RNA815_10599}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA