M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_49461

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_49461 310 6.45 Mlig455_038212

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.921/0.01372

 ABCB6 Mlig455_038212 {REF} {Length: 3868} {TRANSSPLICED} {Pfam: Mitochondrial ABC-transporter N-terminal five TM region [PF16185.7, score=201.8]; ABC transporter transmembrane region [PF00664.25, score=118.3]; ABC transporter [PF00005.29, score=117.0]; RecF/RecN/SMC N terminal domain [PF02463.21, score=20.9]; RsgA GTPase [PF03193.18, score=18.6]} {Human: ENSG00000115657, ABCB6, ATP binding cassette subfamily B member 6 (Langereis blood group), [RH, Score=728, Expect=0.0]} {Mouse: ENSMUSG00000026198, Abcb6, ATP-binding cassette, sub-family B (MDR/TAP), member 6, [RH, Score=727, Expect=0.0]} {Dmel: FBgn0038376, Hmt-1, Heavy metal tolerance factor 1, [RH, Score=816, Expect=0.0]} {Celegans: WBGene00001815, hmt-1, Heavy Metal Tolerance factor; Heavy metal tolerance factor 1, [RH, Score=625, Expect=0.0]} {Smed: dd_Smed_v6_7348_0_1, dd_Smed_v6_7348_0_1, [RH, Score=821, Expect=0.0]} {RNA1509_41047, RNA1509_5979} {RNA1310_2900, RNA1509_41047} {RNA1509_41047, RNA815_4379}

Cumulative graph for MligTC455_49461

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.685 3.229 0.08188 0.62417
RegionR2 1.331 3.229 0.15914 0.49945
RegionR3 1.037 3.229 0.20479 0.74496
RegionR4 1.01 3.229 0.28460 0.59377
RegionR5 1.921 3.229 0.00146 0.01372
RegionR6 1.155 3.229 0.15704 0.70613
RegionR7 -0.488 3.229 0.95484 1.00000
RegionR8 0.721 3.229 0.50356 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.079 3.229 0.99988 1.00000
RegenerationR2 0.754 3.229 0.13966 0.56892
RegenerationR3 0.991 3.229 0.09461 0.49457
RegenerationR4 0.669 3.229 0.30309 0.74456
RegenerationR5 0.102 3.229 0.83279 0.99834
RegenerationR6 0.859 3.229 0.15509 0.48140
RegenerationBL 1.048 3.229 0.18127 0.51056
RegenerationTP 1.331 3.229 0.09139 0.47522


Genes with expression patterns similar to MligTC455_49461

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_49461 310 6.45 Mlig455_038212

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.921/0.01372

 ABCB6 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_038212 {REF} {Length: 3868} {TRANSSPLICED} {Pfam: Mitochondrial ABC-transporter N-terminal five TM region [PF16185.7, score=201.8]; ABC transporter transmembrane region [PF00664.25, score=118.3]; ABC transporter [PF00005.29, score=117.0]; RecF/RecN/SMC N terminal domain [PF02463.21, score=20.9]; RsgA GTPase [PF03193.18, score=18.6]} {Human: ENSG00000115657, ABCB6, ATP binding cassette subfamily B member 6 (Langereis blood group), [RH, Score=728, Expect=0.0]} {Mouse: ENSMUSG00000026198, Abcb6, ATP-binding cassette, sub-family B (MDR/TAP), member 6, [RH, Score=727, Expect=0.0]} {Dmel: FBgn0038376, Hmt-1, Heavy metal tolerance factor 1, [RH, Score=816, Expect=0.0]} {Celegans: WBGene00001815, hmt-1, Heavy Metal Tolerance factor; Heavy metal tolerance factor 1, [RH, Score=625, Expect=0.0]} {Smed: dd_Smed_v6_7348_0_1, dd_Smed_v6_7348_0_1, [RH, Score=821, Expect=0.0]} {RNA1509_41047, RNA1509_5979} {RNA1310_2900, RNA1509_41047} {RNA1509_41047, RNA815_4379}
2. MligTC455_28136 87 1.82 Mlig455_001489

Neo: -

Age: -

 1.839 - - - 0.887 0.952 - Mlig455_001489 {REF} {Length: 2208} {NoTransDecoderORF} {RNA1509_13222} {RNA1310_34828.2} {RNA815_11419.1}
3. MligTC455_31449 314 6.53 Mlig455_008143, Mlig455_039731, Mlig455_070534

Neo: -

Age: -

 1.689 0.737 - - - 0.952 -

Mlig455_008143 {REF} {Length: 1013} {Pfam: Cytoplasmic repetitive antigen (CRA) like repeat [PF07046.13, score=28.8]; Essential protein Yae1, N terminal [PF09811.11, score=27.3]} {RNA1509_53217} {RNA1310_59954.1} {RNA815_36681.1}

Mlig455_039731 {REF} {Length: 1281} {TRANSSPLICED} {Pfam: Essential protein Yae1, N terminal [PF09811.11, score=26.1]; Cytoplasmic repetitive antigen (CRA) like repeat [PF07046.13, score=25.7]} {RNA1509_53217} {RNA1310_59954.1} {RNA815_36681.1}

Mlig455_070534 {REF} {Length: 1190} {RNA1509_53217} {RNA1310_59954.1} {RNA815_36681.1}
4. MligTC455_53181 2612 54.42 Mlig455_061859

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=0.238

 XIRP2 0.958 - - - 0.958 - - Mlig455_061859 {REF} {Length: 3582} {TRANSSPLICED} {Pfam: LIM domain [PF00412.24, score=43.4]} {Human: ENSG00000163092, XIRP2, xin actin binding repeat containing 2, [RH, Score=99.4, Expect=1e-20]} {Mouse: ENSMUSG00000027022, Xirp2, xin actin-binding repeat containing 2, [RH, Score=98.2, Expect=3e-20]} {Dmel: FBgn0063485, Lasp, [Score=57.4, Expect=4e-08]} {Smed: dd_Smed_v6_4138_0_1, dd_Smed_v6_4138_0_1, [Score=107, Expect=2e-25]} {RNA1509_6699} {RNA1310_12435} {RNA815_1836.1}
5. MligTC455_32751 689 14.36 Mlig455_020041

Neo: -

Age: -

 0.957 - - - - - 0.957 Mlig455_020041 {REF} {Length: 1766} {RNA1509_51648} {RNA1310_44620} {RNA815_24505}
6. MligTC455_45355 94 1.96 Mlig455_004538, Mlig455_028540

Neo: -

Age: -

Regeneration-upregulated R2: 4.132

Regeneration-enriched R2: 4.132

 0.957 - - - - 0.957 -

Mlig455_004538 {REF} {Length: 907} {NoTransDecoderORF} {RNA1310_79235} {RNA815_43977}

Mlig455_028540 {REF} {Length: 818} {NoTransDecoderORF} {RNA1310_79235} {RNA815_43977}
7. MligTC455_25177 330 6.87 Mlig455_058575

Neo: -

Age: Up-Down-Down

 0.956 0.956 - - - - - Mlig455_058575 {REF} {Length: 3172} {RNA1509_34496, RNA1509_56824} {RNA1310_29369, RNA1509_34496} {RNA1509_34496, RNA815_24472}
8. MligTC455_41746 366 7.63 Mlig455_015645

Neo: -

Age: -

Region-enriched R5: 1.817/0.00944

 SAMD4B 0.956 0.956 - - - - - Mlig455_015645 {REF} {Length: 3750} {TRANSSPLICED} {Pfam: SAM domain (Sterile alpha motif) [PF00536.32, score=30.4]} {Human: ENSG00000179134, SAMD4B, sterile alpha motif domain containing 4B, [RH, Score=120, Expect=5e-28]} {Mouse: ENSMUSG00000109336, Samd4b, sterile alpha motif domain containing 4B, [RH, Score=116, Expect=5e-27]} {Dmel: FBgn0016070, smg, smaug, [RH, Score=79.7, Expect=3e-15]} {Celegans: WBGene00022538, ZC190.4, [RH, Score=80.1, Expect=1e-15]} {Smed: dd_Smed_v6_6923_0_1, dd_Smed_v6_6923_0_1, [RH, Score=145, Expect=5e-38]} {RNA1509_33258, RNA1509_52855, RNA1509_54805, RNA1509_59930} {RNA1310_14232, RNA1509_33258, RNA1509_52855, RNA1509_54805, RNA1509_59930} {RNA1509_33258, RNA1509_52855, RNA1509_54805, RNA1509_59930, RNA815_10563}
9. MligTC455_52155 342 7.13 Mlig455_003563

Neo: -

Age: logFC(26M/2M)=-0.399

Region-enriched R3: 1.440/0.01270

 LCP1 0.955 - - - - 0.955 - Mlig455_003563 {REF} {Length: 4879} {Pfam: Calponin homology (CH) domain [PF00307.33, score=253.3]; CAMSAP CH domain [PF11971.10, score=41.5]; EF hand [PF00036.34, score=35.4]; EF-hand domain pair [PF13499.8, score=34.7]; EF hand [PF13202.8, score=34.3]; EF-hand domain [PF13405.8, score=31.6]; EF-hand domain [PF14658.8, score=19.1]} {Human: ENSG00000136167, LCP1, lymphocyte cytosolic protein 1, [RH, Score=526, Expect=8e-180]; ENSG00000102024, PLS3, plastin 3, [RH, Score=526, Expect=1e-179]; ENSG00000120756, PLS1, plastin 1, [RH, Score=516, Expect=2e-175]} {Mouse: ENSMUSG00000021998, Lcp1, lymphocyte cytosolic protein 1, [RH, Score=531, Expect=0.0]; ENSMUSG00000049493, Pls1, plastin 1 (I-isoform), [RH, Score=530, Expect=0.0]; ENSMUSG00000016382, Pls3, plastin 3 (T-isoform), [RH, Score=526, Expect=6e-180]} {Dmel: FBgn0024238, Fim, Fimbrin, [RH, Score=607, Expect=0.0]} {Celegans: WBGene00022425, plst-1, PLaSTin (Actin bundling protein) homolog, [RH, Score=399, Expect=5e-134]} {Smed: dd_Smed_v6_749_0_1, dd_Smed_v6_749_0_1, [Score=477, Expect=4e-161]} {RNA1509_12992, RNA1509_56632, RNA1509_7501} {RNA1310_8848, RNA1509_12992, RNA1509_56632} {RNA1509_12992, RNA1509_56632, RNA815_2895}
10. MligTC455_53182 2593 54.01 Mlig455_061866

Neo: -

Age: Down-Down-Up

 XIRP2 0.955 - - - 0.955 - - Mlig455_061866 {REF} {Length: 3831} {TRANSSPLICED} {Pfam: LIM domain [PF00412.24, score=43.3]} {Human: ENSG00000163092, XIRP2, xin actin binding repeat containing 2, [RH, Score=99.0, Expect=1e-20]} {Mouse: ENSMUSG00000027022, Xirp2, xin actin-binding repeat containing 2, [RH, Score=95.9, Expect=1e-19]} {Dmel: FBgn0063485, Lasp, [Score=57.0, Expect=6e-08]} {Smed: dd_Smed_v6_4138_0_1, dd_Smed_v6_4138_0_1, [Score=105, Expect=9e-25]} {RNA1509_6699} {RNA1310_12435} {RNA815_1836.1}
11. MligTC455_46745 334 6.95 Mlig455_034170

Neo: -

Age: -

 ANKRD12 0.953 0.953 - - - - - Mlig455_034170 {REF} {Length: 4585} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=26.8]; Ankyrin repeat [PF00023.32, score=23.4]; Ankyrin repeats (many copies) [PF13857.8, score=21.1]} {Human: ENSG00000101745, ANKRD12, ankyrin repeat domain 12, [RH, Score=128, Expect=3e-29]} {Mouse: ENSMUSG00000034647, Ankrd12, ankyrin repeat domain 12, [RH, Score=129, Expect=1e-29]} {Dmel: FBgn0036305, CG10984, [RH, Score=110, Expect=1e-24]} {Smed: dd_Smed_v6_9297_0_1, dd_Smed_v6_9297_0_1, [RH, Score=155, Expect=1e-38]} {RNA1509_17750} {RNA1310_3406} {RNA815_33283}
12. MligTC455_38932 41 0.86 Mlig455_066147

Neo: -

Age: Up-Down-Up

 0.952 - - - - 0.952 - Mlig455_066147 {REF} {Length: 4682} {RNA1509_51049} {RNA1310_10565.1, RNA1509_51049} {RNA1509_51049, RNA815_21345.1}
13. MligTC455_28729 405 8.44 Mlig455_039763

Neo: -

Age: Down-Up-Up

 ACTR6 0.95 0.950 - - - - - Mlig455_039763 {REF} {Length: 1931} {TRANSSPLICED} {Pfam: Actin [PF00022.21, score=211.0]} {Human: ENSG00000075089, ACTR6, ARP6 actin related protein 6 homolog, [RH, Score=325, Expect=4e-108]} {Mouse: ENSMUSG00000019948, Actr6, ARP6 actin-related protein 6, [RH, Score=322, Expect=5e-107]} {Dmel: FBgn0011741, Arp6, Actin-related protein 6, [RH, Score=312, Expect=3e-103]} {Celegans: WBGene00007434, arp-6, Actin-like protein C08B11.6, [RH, Score=254, Expect=2e-80]} {Smed: dd_Smed_v6_7773_0_1, dd_Smed_v6_7773_0_1, [RH, Score=315, Expect=7e-105]} {RNA1509_26167, RNA1509_45984} {RNA1310_24287, RNA1509_26167, RNA1509_45984} {RNA1509_26167, RNA1509_45984, RNA815_8792}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA