M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_53181

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_53181 2612 54.42 Mlig455_061859

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=0.238

 XIRP2 Mlig455_061859 {REF} {Length: 3582} {TRANSSPLICED} {Pfam: LIM domain [PF00412.24, score=43.4]} {Human: ENSG00000163092, XIRP2, xin actin binding repeat containing 2, [RH, Score=99.4, Expect=1e-20]} {Mouse: ENSMUSG00000027022, Xirp2, xin actin-binding repeat containing 2, [RH, Score=98.2, Expect=3e-20]} {Dmel: FBgn0063485, Lasp, [Score=57.4, Expect=4e-08]} {Smed: dd_Smed_v6_4138_0_1, dd_Smed_v6_4138_0_1, [Score=107, Expect=2e-25]} {RNA1509_6699} {RNA1310_12435} {RNA815_1836.1}

Cumulative graph for MligTC455_53181

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.329 5.908 0.61578 1.00000
RegionR2 0.045 5.908 0.90326 1.00000
RegionR3 0.371 5.908 0.21406 0.75532
RegionR4 0.069 5.908 0.84516 1.00000
RegionR5 -0.193 5.908 0.50909 0.87199
RegionR6 0.385 5.908 0.19497 0.76332
RegionR7 -0.212 5.908 0.53733 1.00000
RegionR8 -0.135 5.908 0.72991 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.168 5.908 0.85664 1.00000
RegenerationR2 0.553 5.908 0.11202 0.52272
RegenerationR3 -0.162 5.908 0.66046 0.93337
RegenerationR4 -0.073 5.908 0.84770 1.00000
RegenerationR5 0.198 5.908 0.58642 0.90357
RegenerationR6 -0.338 5.908 0.36673 0.71011
RegenerationBL 0.224 5.908 0.53814 0.89751
RegenerationTP -0.304 5.908 0.46744 0.87889


Genes with expression patterns similar to MligTC455_53181

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_53181 2612 54.42 Mlig455_061859

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=0.238

 XIRP2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_061859 {REF} {Length: 3582} {TRANSSPLICED} {Pfam: LIM domain [PF00412.24, score=43.4]} {Human: ENSG00000163092, XIRP2, xin actin binding repeat containing 2, [RH, Score=99.4, Expect=1e-20]} {Mouse: ENSMUSG00000027022, Xirp2, xin actin-binding repeat containing 2, [RH, Score=98.2, Expect=3e-20]} {Dmel: FBgn0063485, Lasp, [Score=57.4, Expect=4e-08]} {Smed: dd_Smed_v6_4138_0_1, dd_Smed_v6_4138_0_1, [Score=107, Expect=2e-25]} {RNA1509_6699} {RNA1310_12435} {RNA815_1836.1}
2. MligTC455_53182 2593 54.01 Mlig455_061866

Neo: -

Age: Down-Down-Up

 XIRP2 5.967 0.999 0.997 0.979 0.998 0.999 0.995 Mlig455_061866 {REF} {Length: 3831} {TRANSSPLICED} {Pfam: LIM domain [PF00412.24, score=43.3]} {Human: ENSG00000163092, XIRP2, xin actin binding repeat containing 2, [RH, Score=99.0, Expect=1e-20]} {Mouse: ENSMUSG00000027022, Xirp2, xin actin-binding repeat containing 2, [RH, Score=95.9, Expect=1e-19]} {Dmel: FBgn0063485, Lasp, [Score=57.0, Expect=6e-08]} {Smed: dd_Smed_v6_4138_0_1, dd_Smed_v6_4138_0_1, [Score=105, Expect=9e-25]} {RNA1509_6699} {RNA1310_12435} {RNA815_1836.1}
3. MligTC455_53180 2599 54.15 Mlig455_010514

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.445

 XIRP2 5.897 0.998 0.957 0.985 0.993 0.970 0.994 Mlig455_010514 {REF} {Length: 3954} {TRANSSPLICED} {Pfam: LIM domain [PF00412.24, score=43.3]} {Human: ENSG00000163092, XIRP2, xin actin binding repeat containing 2, [RH, Score=99.0, Expect=1e-20]} {Mouse: ENSMUSG00000027022, Xirp2, xin actin-binding repeat containing 2, [RH, Score=95.9, Expect=1e-19]} {Dmel: FBgn0063485, Lasp, [Score=57.0, Expect=6e-08]} {Smed: dd_Smed_v6_4138_0_1, dd_Smed_v6_4138_0_1, [Score=107, Expect=2e-25]} {RNA1509_6699} {RNA1310_12435} {RNA815_1836.1}
4. MligTC455_40403 9540 198.75 Mlig455_012883

Neo: -

Age: -

 2.668 - - 0.827 - 0.864 0.977 Mlig455_012883 {REF} {Length: 2696} {RNA1509_3465, RNA1509_49920, RNA1509_5573} {RNA1310_95894.2, RNA1509_3465, RNA1509_49920, RNA1509_5573} {RNA1509_3465, RNA1509_49920, RNA1509_5573, RNA815_48924}
5. MligTC455_22198 766 15.95 Mlig455_054315

Neo: -

Age: -

 DCDC1 1.808 - - 0.856 - - 0.952 Mlig455_054315 {REF} {Length: 7168} {Pfam: Cep120 protein [PF12416.10, score=49.6]; Doublecortin [PF03607.19, score=39.3]; KHA, dimerisation domain of potassium ion channel [PF11834.10, score=22.6]; CIDE-N domain [PF02017.17, score=21.0]} {Human: ENSG00000170959, DCDC1, doublecortin domain containing 1, [RH, Score=399, Expect=1e-112]} {Smed: dd_Smed_v6_11770_0_1, dd_Smed_v6_11770_0_1, [RH, Score=297, Expect=6e-81]} {RNA1509_1192} {RNA1310_347} {RNA815_115}
6. MligTC455_08365 2725 56.78 Mlig455_049105

Neo: -

Age: -

 DYNLRB1 1.776 - - 0.815 - - 0.961 Mlig455_049105 {REF} {Length: 862} {Pfam: Roadblock/LC7 domain [PF03259.19, score=79.3]; Ragulator complex protein LAMTOR5 [PF16672.7, score=22.4]} {Human: ENSG00000125971, DYNLRB1, dynein light chain roadblock-type 1, [RH, Score=137, Expect=2e-43]; ENSG00000168589, DYNLRB2, dynein light chain roadblock-type 2, [RH, Score=132, Expect=3e-41]} {Mouse: ENSMUSG00000047459, Dynlrb1, dynein light chain roadblock-type 1, [RH, Score=134, Expect=3e-42]; ENSMUSG00000034467, Dynlrb2, dynein light chain roadblock-type 2, [RH, Score=134, Expect=4e-42]} {Dmel: FBgn0024196, robl, roadblock, [Score=132, Expect=1e-41]} {Celegans: WBGene00012004, dyrb-1, Dynein light chain roadblock, [RH, Score=98.6, Expect=2e-28]} {Smed: dd_Smed_v6_5440_0_1, dd_Smed_v6_5440_0_1, [RH, Score=133, Expect=4e-42]} {RNA1509_6206} {RNA1310_34984} {RNA815_17288.1}
7. MligTC455_42705 2141 44.61 Mlig455_043890

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.352

Region-enriched R2: 1.601/0.00749

 1.716 - - 0.760 - - 0.956 Mlig455_043890 {REF} {Length: 1455} {Smed: dd_Smed_v6_3220_0_1, dd_Smed_v6_3220_0_1, [RH, Score=105, Expect=2e-30]} {RNA1509_12375} {RNA1310_57925} {RNA815_34950}
8. MligTC455_33106 458 9.53 Mlig455_010260

Neo: -

Age: -

 DYRK2 1.698 - - - - 0.739 0.959 Mlig455_010260 {REF} {Length: 4138} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=195.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=81.1]; ABC1 atypical kinase-like domain [PF03109.18, score=27.3]; Phosphotransferase enzyme family [PF01636.25, score=21.3]} {Human: ENSG00000127334, DYRK2, dual specificity tyrosine phosphorylation regulated kinase 2, [RH, Score=649, Expect=0.0]} {Mouse: ENSMUSG00000028630, Dyrk2, dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2, [RH, Score=649, Expect=0.0]} {Dmel: FBgn0027101, Dyrk3, Dual-specificity tyrosine phosphorylation-regulated kinase 3, [RH, Score=569, Expect=0.0]} {Celegans: WBGene00003150, mbk-2, Dual specificity tyrosine-phosphorylation-regulated kinase mbk-2, [RH, Score=587, Expect=0.0]} {Smed: dd_Smed_v6_10966_0_1, dd_Smed_v6_10966_0_1, [RH, Score=630, Expect=0.0]} {RNA1509_6870} {RNA1310_14641} {RNA815_4815}
9. MligTC455_22504 1420 29.59 Mlig455_024698

Neo: -

Age: -

Region-enriched R2: 2.128/0.02738

 FAT4 1.694 - - 0.741 - - 0.953 Mlig455_024698 {REF} {Length: 8652} {Pfam: Cadherin domain [PF00028.19, score=775.6]; Cadherin-like [PF16184.7, score=84.6]; Cadherin-like [PF08266.14, score=61.0]; RET Cadherin like domain 1 [PF17756.3, score=43.5]} {Human: ENSG00000196159, FAT4, FAT atypical cadherin 4, [Score=610, Expect=1e-176]} {Mouse: ENSMUSG00000046743, Fat4, FAT atypical cadherin 4, [Score=609, Expect=2e-176]} {Dmel: FBgn0001075, ft, fat, [Score=536, Expect=1e-153]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=324, Expect=1e-88]} {Smed: dd_Smed_v6_7638_0_1, dd_Smed_v6_7638_0_1, [Score=288, Expect=1e-77]} {RNA1509_27999, RNA1509_35319, RNA1509_477} {RNA1310_252.2, RNA1509_27999, RNA1509_35319, RNA1509_477} {RNA1509_27999, RNA1509_35319, RNA1509_477, RNA815_84}
10. MligTC455_27885 590 12.3 Mlig455_003748

Neo: -

Age: logFC(26M/2M)=1.037

 DSP 1.687 - 0.737 - - - 0.950 Mlig455_003748 {REF} {Length: 27472} {Pfam: SH3 domain [PF17902.3, score=34.6]; Orthopoxvirus F14 protein [PF06076.14, score=19.1]} {Human: ENSG00000096696, DSP, desmoplakin, [Score=71.2, Expect=8e-11]} {Mouse: ENSMUSG00000054889, Dsp, desmoplakin, [Score=69.7, Expect=2e-10]} {Dmel: FBgn0013733, shot, short stop, [Score=79.7, Expect=1e-13]} {Celegans: WBGene00006876, vab-10, VAB-10B protein, [Score=59.7, Expect=9e-08]} {Smed: dd_Smed_v6_8220_0_6, dd_Smed_v6_8220_0_6, [Score=162, Expect=4e-39]} {RNA1509_35456, RNA1509_39493, RNA1509_525, RNA1509_7595} {RNA1310_192.1, RNA1509_35456, RNA1509_39493, RNA1509_525, RNA1509_7595} {RNA1509_35456, RNA1509_39493, RNA1509_525, RNA1509_7595, RNA815_18.1}
11. MligTC455_26807 563 11.74 Mlig455_002350

Neo: -

Age: Down-Up-Up

 C8orf37 1.66 - - - 0.706 - 0.954 Mlig455_002350 {REF} {Length: 1660} {Pfam: Retinal Maintenance [PF14996.8, score=124.2]} {Human: ENSG00000156172, C8orf37, chromosome 8 open reading frame 37, [RH, Score=78.2, Expect=2e-17]} {Mouse: ENSMUSG00000059482, 2610301B20Rik, RIKEN cDNA 2610301B20 gene, [RH, Score=84.0, Expect=9e-20]} {Smed: dd_Smed_v6_8015_0_1, dd_Smed_v6_8015_0_1, [RH, Score=71.6, Expect=1e-15]} {RNA1509_18404} {RNA1310_31699.2, RNA1509_18404} {RNA1509_18404, RNA815_19469}
12. MligTC455_27035 158 3.29 Mlig455_005901, Mlig455_063637

Neo: -

Age: logFC(26M/2M)=0.334

Region-enriched R2: 2.799/0.04066

 0.978 - - - 0.978 - -

Mlig455_005901 {REF} {Length: 348} {NoTransDecoderORF} {RNA1509_6640} {RNA1310_60233} {RNA815_207.1}

Mlig455_063637 {REF} {Length: 2011} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=56.4]; TcdA/TcdB catalytic glycosyltransferase domain [PF12919.9, score=19.8]} {Celegans: WBGene00021577, Y46B2A.2, [Score=72.4, Expect=3e-13]} {Smed: dd_Smed_v6_9783_0_1, dd_Smed_v6_9783_0_1, [Score=136, Expect=6e-36]} {RNA1509_24827} {RNA1310_24000} {RNA815_6273}
13. MligTC455_27036 833 17.36 Mlig455_008299, Mlig455_042963, Mlig455_048586, Mlig455_051917, Mlig455_059150, Mlig455_060138, Mlig455_067251

Neo: -

Age: -

 0.972 - - - 0.972 - -

Mlig455_008299 {REF} {Length: 2815} {NoTransDecoderORF} {RNA1509_6640} {RNA1310_811} {RNA815_207.1}

Mlig455_042963 {REF} {Length: 2378} {RNA1509_6640} {RNA1310_38395} {RNA815_207.1}

Mlig455_048586 {REF} {Length: 2430} {RNA1509_45658} {RNA1310_14625.1} {RNA815_19998}

Mlig455_051917 {REF} {Length: 2040} {Pfam: Replication protein A OB domain [PF16900.7, score=48.0]} {RNA1509_6640} {RNA1310_4236} {RNA815_207.1}

Mlig455_059150 {REF} {Length: 1272} {Pfam: Replication protein A OB domain [PF16900.7, score=49.4]} {RNA1509_6640} {RNA1310_4236} {RNA815_207.1}

Mlig455_060138 {REF} {Length: 2498} {RNA1509_6640} {RNA1310_38395} {RNA815_207.1}

Mlig455_067251 {REF} {Length: 203} {NoTransDecoderORF} {RNA1509_6640} {RNA1310_60233} {RNA815_207.1}
14. MligTC455_19171 162 3.38 Mlig455_047844

Neo: -

Age: -

 LRRD1 0.966 - - - - - 0.966 Mlig455_047844 {REF} {Length: 3483} {Pfam: Leucine rich repeat [PF13855.8, score=200.6]; Leucine Rich repeats (2 copies) [PF12799.9, score=161.9]; Leucine-rich repeat [PF14580.8, score=62.9]; Death domain [PF00531.24, score=25.2]; RsmF rRNA methyltransferase first C-terminal domain [PF17126.7, score=19.3]} {Human: ENSG00000240720, LRRD1, leucine rich repeats and death domain containing 1, [RH, Score=265, Expect=2e-76]} {Mouse: ENSMUSG00000040367, Lrrd1, leucine rich repeats and death domain containing 1, [RH, Score=305, Expect=1e-91]} {Dmel: FBgn0038504, Sur-8, [Score=157, Expect=3e-40]} {Celegans: WBGene00004929, soc-2, Leucine-rich repeat protein soc-2, [Score=151, Expect=1e-38]} {Smed: dd_Smed_v6_10136_0_1, dd_Smed_v6_10136_0_1, [RH, Score=281, Expect=6e-85]} {RNA1509_11343, RNA1509_19633} {RNA1310_7039.2, RNA1509_11343} {RNA1509_11343, RNA815_1369.1}
15. MligTC455_44253 3332 69.42 Mlig455_063569

Neo: -

Age: logFC(26M/2M)=-0.289

 C4orf47 0.966 - - 0.966 - - - Mlig455_063569 {REF} {Length: 1525} {Pfam: Domain of unknown function (DUF4586) [PF15239.8, score=293.8]} {Human: ENSG00000205129, C4orf47, chromosome 4 open reading frame 47, [RH, Score=239, Expect=3e-77]} {Mouse: ENSMUSG00000071103, 1700029J07Rik, RIKEN cDNA 1700029J07 gene, [RH, Score=249, Expect=4e-81]} {Smed: dd_Smed_v6_8186_0_1, dd_Smed_v6_8186_0_1, [RH, Score=325, Expect=1e-111]} {RNA1509_16398, RNA1509_21810, RNA1509_2400} {RNA1310_20012, RNA1509_16398, RNA1509_21810, RNA1509_2400} {RNA1509_16398, RNA1509_21810, RNA1509_2400, RNA815_7964}
16. MligTC455_16539 764 15.92 Mlig455_047850

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.574

 0.965 - - - - - 0.965 Mlig455_047850 {REF} {Length: 1066} {RNA1509_38895} {RNA1310_54687, RNA1509_38895} {RNA1509_38895, RNA815_27874}
17. MligTC455_31322 155 3.24 Mlig455_051441

Neo: -

Age: -

 0.962 - - - - - 0.962 Mlig455_051441 {REF} {Length: 1909} {TRANSSPLICED} {RNA1509_14413} {RNA1310_10720.1} {RNA815_3565}
18. MligTC455_49461 310 6.45 Mlig455_038212

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.921/0.01372

 ABCB6 0.958 - - - 0.958 - - Mlig455_038212 {REF} {Length: 3868} {TRANSSPLICED} {Pfam: Mitochondrial ABC-transporter N-terminal five TM region [PF16185.7, score=201.8]; ABC transporter transmembrane region [PF00664.25, score=118.3]; ABC transporter [PF00005.29, score=117.0]; RecF/RecN/SMC N terminal domain [PF02463.21, score=20.9]; RsgA GTPase [PF03193.18, score=18.6]} {Human: ENSG00000115657, ABCB6, ATP binding cassette subfamily B member 6 (Langereis blood group), [RH, Score=728, Expect=0.0]} {Mouse: ENSMUSG00000026198, Abcb6, ATP-binding cassette, sub-family B (MDR/TAP), member 6, [RH, Score=727, Expect=0.0]} {Dmel: FBgn0038376, Hmt-1, Heavy metal tolerance factor 1, [RH, Score=816, Expect=0.0]} {Celegans: WBGene00001815, hmt-1, Heavy Metal Tolerance factor; Heavy metal tolerance factor 1, [RH, Score=625, Expect=0.0]} {Smed: dd_Smed_v6_7348_0_1, dd_Smed_v6_7348_0_1, [RH, Score=821, Expect=0.0]} {RNA1509_41047, RNA1509_5979} {RNA1310_2900, RNA1509_41047} {RNA1509_41047, RNA815_4379}
19. MligTC455_44252 3395 70.73 Mlig455_028205

Neo: -

Age: logFC(26M/2M)=-0.233

 C4orf47 0.956 - - 0.956 - - - Mlig455_028205 {REF} {Length: 1511} {Pfam: Domain of unknown function (DUF4586) [PF15239.8, score=294.8]} {Human: ENSG00000205129, C4orf47, chromosome 4 open reading frame 47, [RH, Score=239, Expect=4e-77]} {Mouse: ENSMUSG00000071103, 1700029J07Rik, RIKEN cDNA 1700029J07 gene, [RH, Score=249, Expect=3e-81]} {Smed: dd_Smed_v6_8186_0_1, dd_Smed_v6_8186_0_1, [RH, Score=326, Expect=5e-112]} {RNA1509_2400} {RNA1310_20012} {RNA815_7964}
20. MligTC455_45218 304 6.34 Mlig455_035420

Neo: -

Age: Down-Up-Down

 0.954 - - - - - 0.954 Mlig455_035420 {REF} {Length: 2939} {Celegans: WBGene00009391, F35C5.3, [Score=57.8, Expect=6e-09]} {RNA1509_47707, RNA1509_52112} {RNA1310_25873, RNA1509_47707, RNA1509_52112} {RNA1509_47707, RNA1509_52112, RNA815_11232.2}
21. MligTC455_27915 1941 40.44 Mlig455_043371

Neo: -

Age: -

 0.953 - - - - - 0.953 Mlig455_043371 {REF} {Length: 1120} {Pfam: Domain of unknown function (DUF4515) [PF14988.8, score=105.7]} {Mouse: ENSMUSG00000098176, Ccdc166, coiled-coil domain containing 166, [RH, Score=107, Expect=4e-26]} {Smed: dd_Smed_v6_13384_0_1, dd_Smed_v6_13384_0_1, [RH, Score=126, Expect=2e-34]} {RNA1509_14562, RNA1509_19268} {RNA1310_32791.2, RNA1509_14562, RNA1509_19268} {RNA1509_14562, RNA1509_19268, RNA815_15652}
22. MligTC455_43528 1273 26.52 Mlig455_068411

Neo: -

Age: Down-Up-Up

 0.953 - - - - - 0.953 Mlig455_068411 {REF} {Length: 842} {Pfam: Pancreatic hormone peptide [PF00159.20, score=37.0]} {RNA1509_15391, RNA1509_36078, RNA1509_47628} {RNA1310_43859, RNA1509_15391, RNA1509_36078, RNA1509_47628} {RNA1509_15391, RNA1509_36078, RNA1509_47628, RNA815_26881}
23. MligTC455_50359 1455 30.32 Mlig455_012019

Neo: -

Age: logFC(26M/2M)=-0.266

 0.953 - - - - - 0.953 Mlig455_012019 {REF} {Length: 2713} {TRANSSPLICED} {Pfam: Domain of unknown function with conserved HDNR motif [PF15115.8, score=45.4]} {RNA1509_14584, RNA1509_21086, RNA1509_59320} {RNA1310_16233.2, RNA1509_14584, RNA1509_21086, RNA1509_59320} {RNA1509_14584, RNA1509_21086, RNA1509_59320, RNA815_16740}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA