TomoSeq data search

Data search

Results for MligTC455_49649

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_49649

277

5.78

Mlig455_045917, Mlig455_046096

Neo: Irradiation

Age: -

ERCC8

Mlig455_045917 {REF} {Length: 2112} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=86.2]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=37.5]} {Human: ENSG00000049167, ERCC8, ERCC excision repair 8, CSA ubiquitin ligase complex subunit, [RH, Score=228, Expect=2e-70]} {Mouse: ENSMUSG00000021694, Ercc8, excision repaiross-complementing rodent repair deficiency, complementation group 8, [RH, Score=239, Expect=1e-74]} {Dmel: FBgn0027524, CG3909, [Score=62.8, Expect=1e-10]} {Celegans: WBGene00004312, rba-1, Probable histone-binding protein rba-1, [Score=53.9, Expect=1e-07]} {Smed: dd_Smed_v6_9396_0_1, dd_Smed_v6_9396_0_1, [RH, Score=197, Expect=2e-59]} {RNA1509_40956} {RNA1310_16657, RNA1509_40956} {RNA1509_40956, RNA815_22444}

Mlig455_046096 {REF} {Length: 1921} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=74.3]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=28.2]} {Human: ENSG00000049167, ERCC8, ERCC excision repair 8, CSA ubiquitin ligase complex subunit, [Score=206, Expect=2e-62]} {Mouse: ENSMUSG00000021694, Ercc8, excision repaiross-complementing rodent repair deficiency, complementation group 8, [Score=214, Expect=6e-66]} {Dmel: FBgn0040066, wds, will die slowly, [Score=59.3, Expect=2e-09]} {Celegans: WBGene00013862, wdr-5.3, WD repeat-containing protein wdr-5.3, [Score=58.9, Expect=2e-09]} {Smed: dd_Smed_v6_9396_0_1, dd_Smed_v6_9396_0_1, [Score=181, Expect=7e-54]} {RNA1509_40956, RNA1509_43116} {RNA1310_16657, RNA1509_43116} {RNA1509_43116, RNA815_22444}

Cumulative graph for MligTC455_49649

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.166	3.019	0.93693	1.00000
RegionR2	0.362	3.019	0.67176	0.99950
RegionR3	0.09	3.019	0.88946	1.00000
RegionR4	-0.083	3.019	0.92999	1.00000
RegionR5	0.139	3.019	0.81218	1.00000
RegionR6	-0.679	3.019	0.30740	0.89833
RegionR7	0.279	3.019	0.72355	1.00000
RegionR8	0.058	3.019	0.95337	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-3.721	3.019	0.55258	1.00000
RegenerationR2	-0.22	3.019	0.76314	0.97764
RegenerationR3	1.594	3.019	0.04158	0.35771
RegenerationR4	1.124	3.019	0.18037	0.62067
RegenerationR5	0.946	3.019	0.16665	0.59297
RegenerationR6	2.544	3.019	0.00107	0.03601
RegenerationBL	1.823	3.019	0.03400	0.20681
RegenerationTP	-2.64	3.019	0.05816	0.39213

Genes with expression patterns similar to MligTC455_49649

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_49649	277	5.78	Mlig455_045917, Mlig455_046096	Neo: Irradiation Age: -	ERCC8	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_045917 {REF} {Length: 2112} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=86.2]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=37.5]} {Human: ENSG00000049167, ERCC8, ERCC excision repair 8, CSA ubiquitin ligase complex subunit, [RH, Score=228, Expect=2e-70]} {Mouse: ENSMUSG00000021694, Ercc8, excision repaiross-complementing rodent repair deficiency, complementation group 8, [RH, Score=239, Expect=1e-74]} {Dmel: FBgn0027524, CG3909, [Score=62.8, Expect=1e-10]} {Celegans: WBGene00004312, rba-1, Probable histone-binding protein rba-1, [Score=53.9, Expect=1e-07]} {Smed: dd_Smed_v6_9396_0_1, dd_Smed_v6_9396_0_1, [RH, Score=197, Expect=2e-59]} {RNA1509_40956} {RNA1310_16657, RNA1509_40956} {RNA1509_40956, RNA815_22444} Mlig455_046096 {REF} {Length: 1921} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=74.3]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=28.2]} {Human: ENSG00000049167, ERCC8, ERCC excision repair 8, CSA ubiquitin ligase complex subunit, [Score=206, Expect=2e-62]} {Mouse: ENSMUSG00000021694, Ercc8, excision repaiross-complementing rodent repair deficiency, complementation group 8, [Score=214, Expect=6e-66]} {Dmel: FBgn0040066, wds, will die slowly, [Score=59.3, Expect=2e-09]} {Celegans: WBGene00013862, wdr-5.3, WD repeat-containing protein wdr-5.3, [Score=58.9, Expect=2e-09]} {Smed: dd_Smed_v6_9396_0_1, dd_Smed_v6_9396_0_1, [Score=181, Expect=7e-54]} {RNA1509_40956, RNA1509_43116} {RNA1310_16657, RNA1509_43116} {RNA1509_43116, RNA815_22444}
2.	MligTC455_19513	42	0.87	Mlig455_026564	Neo: - Age: -	PCDH9	0.986	-	-	0.986	-	-	-	Mlig455_026564 {REF} {Length: 3867} {TRANSSPLICED} {Pfam: Cadherin domain [PF00028.19, score=285.5]; Cadherin-like [PF08266.14, score=33.5]; Cadherin-like [PF16184.7, score=31.4]} {Human: ENSG00000184226, PCDH9, protocadherin 9, [Score=261, Expect=4e-71]} {Mouse: ENSMUSG00000055421, Pcdh9, protocadherin 9, [Score=255, Expect=3e-69]} {Dmel: FBgn0284247, ds, dachsous, [Score=241, Expect=2e-64]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=182, Expect=5e-46]} {Smed: dd_Smed_v6_13570_0_1, dd_Smed_v6_13570_0_1, [RH, Score=288, Expect=9e-82]} {RNA1509_32343} {RNA1310_10540.1} {RNA815_12119}
3.	MligTC455_50386	19	0.39	Mlig455_007195	Neo: - Age: -	IMP4	0.982	-	-	-	0.982	-	-	Mlig455_007195 {REF} {Length: 990} {TRANSSPLICED} {Pfam: Brix domain [PF04427.20, score=66.4]} {Human: ENSG00000136718, IMP4, IMP4, U3 small nucleolar ribonucleoprotein, [Score=258, Expect=3e-85]} {Mouse: ENSMUSG00000026127, Imp4, IMP4, U3 small nucleolar ribonucleoprotein, [Score=258, Expect=2e-85]} {Dmel: FBgn0039274, CG11920, [Score=244, Expect=3e-80]} {Celegans: WBGene00014083, ZK795.3, Brix domain-containing protein ZK795.3, [Score=269, Expect=4e-90]} {Smed: dd_Smed_v6_7284_0_1, dd_Smed_v6_7284_0_1, [Score=216, Expect=4e-69]} {RNA1509_5070} {RNA1310_32305.1} {RNA815_15104}
4.	MligTC455_34636	156	3.25	Mlig455_024580	Neo: - Age: -	GALT	0.975	-	-	-	-	0.975	-	Mlig455_024580 {REF} {Length: 3303} {TRANSSPLICED} {Pfam: Galactose-1-phosphate uridyl transferase, C-terminal domain [PF02744.19, score=198.0]; Galactose-1-phosphate uridyl transferase, N-terminal domain [PF01087.24, score=193.6]} {Human: ENSG00000213930, GALT, galactose-1-phosphate uridylyltransferase, [RH, Score=417, Expect=3e-145]} {Mouse: ENSMUSG00000036073, Galt, galactose-1-phosphate uridyl transferase, [RH, Score=421, Expect=2e-147]} {Dmel: FBgn0263200, Galt, Galactose-1-phosphate uridylyltransferase, [RH, Score=409, Expect=1e-142]} {Celegans: WBGene00014203, ZK1058.3, Probable galactose-1-phosphate uridylyltransferase, [RH, Score=363, Expect=1e-124]} {Smed: dd_Smed_v6_5995_0_1, dd_Smed_v6_5995_0_1, [RH, Score=389, Expect=3e-135]} {RNA1509_12200} {RNA1310_17669} {RNA815_12773}
5.	MligTC455_34093	75	1.56	Mlig455_060808	Neo: - Age: logFC(26M/2M)=-0.412		0.962	-	-	-	-	0.962	-	Mlig455_060808 {REF} {Length: 3019} {RNA1509_35315} {RNA1310_28904.1} {RNA815_22847.1}
6.	MligTC455_33177	102	2.12	Mlig455_064812	Neo: - Age: -		0.961	-	-	-	0.961	-	-	Mlig455_064812 {REF} {Length: 2741} {RNA1509_801} {RNA1310_53126} {RNA815_1839.1}
7.	MligTC455_22262	125	2.61	Mlig455_021501, Mlig455_063196, Mlig455_067390	Neo: - Age: Up-Down-Down	OSBPL2	0.959	-	-	0.959	-	-	-	Mlig455_021501 {REF} {Length: 5055} {Pfam: Oxysterol-binding protein [PF01237.20, score=361.3]} {Human: ENSG00000130703, OSBPL2, oxysterol binding protein like 2, [Score=296, Expect=2e-94]} {Mouse: ENSMUSG00000044252, Osbpl1a, oxysterol binding protein-like 1A, [Score=322, Expect=1e-99]} {Dmel: FBgn0034951, CG3860, [Score=312, Expect=2e-101]} {Celegans: WBGene00008832, obr-2, Oxysterol Binding protein (OSBP) Related, [Score=184, Expect=8e-53]} {Smed: dd_Smed_v6_12759_0_1, dd_Smed_v6_12759_0_1, [Score=275, Expect=1e-86]} {RNA1310_94348} {RNA815_58347} Mlig455_063196 {REF} {Length: 3563} {Pfam: Oxysterol-binding protein [PF01237.20, score=373.3]} {Human: ENSG00000130703, OSBPL2, oxysterol binding protein like 2, [Score=311, Expect=5e-100]} {Mouse: ENSMUSG00000044252, Osbpl1a, oxysterol binding protein-like 1A, [Score=338, Expect=1e-105]} {Dmel: FBgn0034951, CG3860, [Score=330, Expect=9e-108]} {Celegans: WBGene00008832, obr-2, Oxysterol Binding protein (OSBP) Related, [Score=184, Expect=1e-52]} {Smed: dd_Smed_v6_12759_0_1, dd_Smed_v6_12759_0_1, [Score=288, Expect=3e-91]} {RNA1310_86980} Mlig455_067390 {REF} {Length: 3507} {Pfam: Oxysterol-binding protein [PF01237.20, score=236.5]} {Human: ENSG00000130703, OSBPL2, oxysterol binding protein like 2, [Score=223, Expect=1e-67]} {Mouse: ENSMUSG00000044252, Osbpl1a, oxysterol binding protein-like 1A, [Score=244, Expect=3e-75]} {Dmel: FBgn0034951, CG3860, [Score=221, Expect=2e-67]} {Celegans: WBGene00008832, obr-2, Oxysterol Binding protein (OSBP) Related, [Score=92.4, Expect=3e-20]} {Smed: dd_Smed_v6_12759_0_1, dd_Smed_v6_12759_0_1, [Score=177, Expect=1e-50]} {RNA1310_86980}
8.	MligTC455_39654	5	0.11	Mlig455_027417	Neo: - Age: Up-Down-Down	UBR4	0.959	-	-	-	-	0.959	-	Mlig455_027417 {REF} {Length: 12759} {Pfam: E3 ubiquitin-protein ligases UBR4 N-terminal [PF19423.1, score=91.0]; Putative zinc finger in N-recognin (UBR box) [PF02207.22, score=30.0]} {Human: ENSG00000127481, UBR4, ubiquitin protein ligase E3 component n-recognin 4, [RH, Score=482, Expect=2e-137]} {Mouse: ENSMUSG00000066036, Ubr4, ubiquitin protein ligase E3 component n-recognin 4, [RH, Score=480, Expect=4e-137]} {Dmel: FBgn0011230, poe, purity of essence, [Score=466, Expect=3e-131]} {Celegans: WBGene00016650, ubr-4, UBR E3 ubiquitin ligase homolog, [Score=96.7, Expect=3e-19]} {Smed: dd_Smed_v6_2422_0_1, dd_Smed_v6_2422_0_1, [Score=344, Expect=3e-94]} {RNA1509_793} {RNA1310_49.1} {RNA815_276.1}
9.	MligTC455_00387	32	0.66	Mlig455_025051, Mlig455_025067	Neo: - Age: -		0.958	-	-	-	-	0.958	-	Mlig455_025051 {REF} {Length: 625} {NoTransDecoderORF} Mlig455_025067 {REF} {Length: 1006}
10.	MligTC455_40049	166	3.45	Mlig455_017607, Mlig455_058891	Neo: Irradiation Age: Up-Down-Down	PBRM1	0.957	-	-	-	0.957	-	-	Mlig455_017607 {REF} {Length: 435} {TRANSSPLICED} {Pfam: Bromodomain [PF00439.27, score=322.4]; BAH domain [PF01426.20, score=99.5]; HMG (high mobility group) box [PF00505.21, score=47.2]; HMG-box domain [PF09011.12, score=36.8]} {Human: ENSG00000163939, PBRM1, polybromo 1, [RH, Score=522, Expect=3e-155]} {Mouse: ENSMUSG00000042323, Pbrm1, polybromo 1, [RH, Score=525, Expect=9e-156]} {Dmel: FBgn0039227, polybromo, [RH, Score=413, Expect=4e-118]} {Celegans: WBGene00007042, pbrm-1, PolyBRoMo domain containing, [RH, Score=331, Expect=2e-91]} {Smed: dd_Smed_v6_4218_0_1, dd_Smed_v6_4218_0_1, [Score=665, Expect=0.0]} {RNA1509_5406} {RNA1310_1358} {RNA815_29359} Mlig455_058891 {REF} {Length: 6537} {TRANSSPLICED} {Pfam: Bromodomain [PF00439.27, score=322.4]; BAH domain [PF01426.20, score=99.5]; HMG (high mobility group) box [PF00505.21, score=47.2]; HMG-box domain [PF09011.12, score=36.8]} {Human: ENSG00000163939, PBRM1, polybromo 1, [RH, Score=522, Expect=3e-155]} {Mouse: ENSMUSG00000042323, Pbrm1, polybromo 1, [RH, Score=525, Expect=9e-156]} {Dmel: FBgn0039227, polybromo, [RH, Score=413, Expect=4e-118]} {Celegans: WBGene00007042, pbrm-1, PolyBRoMo domain containing, [RH, Score=331, Expect=2e-91]} {Smed: dd_Smed_v6_4218_0_1, dd_Smed_v6_4218_0_1, [Score=665, Expect=0.0]} {RNA1509_5406} {RNA1310_918.1} {RNA815_609.1}
11.	MligTC455_36228	588	12.25	Mlig455_028918	Neo: - Age: Up-Down-Up, logFC(26M/2M)=1.158		0.956	-	-	-	-	0.956	-	Mlig455_028918 {REF} {Length: 20820} {Pfam: Domain of unknown function (DUF4384) [PF14326.8, score=19.6]} {RNA1509_5854} {RNA1310_268.1} {RNA815_437}
12.	MligTC455_45685	182	3.8	Mlig455_014783	Neo: Irradiation Age: Up-Up-Down	ATP13A3	0.956	-	-	-	0.956	-	-	Mlig455_014783 {REF} {Length: 5032} {TRANSSPLICED} {Pfam: E1-E2 ATPase [PF00122.22, score=122.2]; P5-type ATPase cation transporter [PF12409.10, score=80.2]; haloacid dehalogenase-like hydrolase [PF00702.28, score=57.3]; Cation transporter/ATPase, N-terminus [PF00690.28, score=24.2]} {Human: ENSG00000133657, ATP13A3, ATPase 13A3, [Score=804, Expect=0.0]; ENSG00000159363, ATP13A2, ATPase cation transporting 13A2, [Score=777, Expect=0.0]} {Mouse: ENSMUSG00000022533, Atp13a3, ATPase type 13A3, [Score=808, Expect=0.0]; ENSMUSG00000036622, Atp13a2, ATPase type 13A2, [Score=769, Expect=0.0]} {Dmel: FBgn0052000, CG32000, [Score=582, Expect=0.0]} {Celegans: WBGene00012341, catp-6, Probable cation-transporting ATPase W08D2.5, [Score=760, Expect=0.0]} {Smed: dd_Smed_v6_1640_0_1, dd_Smed_v6_1640_0_1, [Score=1018, Expect=0.0]} {RNA1509_8032} {RNA1310_2098.1, RNA1509_8032} {RNA1509_8032, RNA815_3619.1}
13.	MligTC455_30223	110	2.29	Mlig455_025799	Neo: - Age: Down-Down-Down	PIF1	0.955	-	-	-	0.955	-	-	Mlig455_025799 {REF} {Length: 9227} {Pfam: PIF1-like helicase [PF05970.16, score=333.7]; Helitron helicase-like domain at N-terminus [PF14214.8, score=174.7]; AAA domain [PF13604.8, score=45.8]; UvrD-like helicase C-terminal domain [PF13538.8, score=25.5]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=125, Expect=2e-28]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=120, Expect=2e-27]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=122, Expect=5e-28]} {Celegans: WBGene00019136, F59H6.5, [RH, Score=771, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=116, Expect=4e-26]} {RNA1509_5036} {RNA1310_728.1} {RNA815_356.1}
14.	MligTC455_53337	48	1.01	Mlig455_007511, Mlig455_067679	Neo: - Age: -		0.95	-	-	-	-	0.950	-	Mlig455_007511 {REF} {Length: 3196} {Pfam: Immunoglobulin domain [PF13895.8, score=37.0]; Immunoglobulin domain [PF13927.8, score=23.5]} {RNA1509_58583} {RNA1310_50684.1} {RNA815_25388} Mlig455_067679 {REF} {Length: 1900} {RNA1509_58583} {RNA1310_72577} {RNA815_25388}

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