M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_50386

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_50386 19 0.39 Mlig455_007195

Neo: -

Age: -

 IMP4 Mlig455_007195 {REF} {Length: 990} {TRANSSPLICED} {Pfam: Brix domain [PF04427.20, score=66.4]} {Human: ENSG00000136718, IMP4, IMP4, U3 small nucleolar ribonucleoprotein, [Score=258, Expect=3e-85]} {Mouse: ENSMUSG00000026127, Imp4, IMP4, U3 small nucleolar ribonucleoprotein, [Score=258, Expect=2e-85]} {Dmel: FBgn0039274, CG11920, [Score=244, Expect=3e-80]} {Celegans: WBGene00014083, ZK795.3, Brix domain-containing protein ZK795.3, [Score=269, Expect=4e-90]} {Smed: dd_Smed_v6_7284_0_1, dd_Smed_v6_7284_0_1, [Score=216, Expect=4e-69]} {RNA1509_5070} {RNA1310_32305.1} {RNA815_15104}

Cumulative graph for MligTC455_50386

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.793 0.739 1.00000 1.00000
RegionR2 -1.164 0.739 0.99990 1.00000
RegionR3 0.159 0.739 0.99999 1.00000
RegionR4 1.422 0.739 1.00000 1.00000
RegionR5 0.781 0.739 1.00000 1.00000
RegionR6 0.117 0.739 0.99999 1.00000
RegionR7 -0.285 0.739 1.00000 1.00000
RegionR8 -0.237 0.739 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.205 0.739 1.00000 1.00000
RegenerationR2 2.14 0.739 0.14944 0.58269
RegenerationR3 2.342 0.739 0.20964 0.64568
RegenerationR4 2.091 0.739 0.19204 0.63653
RegenerationR5 1.195 0.739 0.32428 0.74693
RegenerationR6 3.292 0.739 0.12811 0.43993
RegenerationBL 3.344 0.739 0.15080 0.46408
RegenerationTP -0.538 0.739 0.99998 1.00000


Genes with expression patterns similar to MligTC455_50386

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_50386 19 0.39 Mlig455_007195

Neo: -

Age: -

 IMP4 2 - - - 1.000 1.000 - Mlig455_007195 {REF} {Length: 990} {TRANSSPLICED} {Pfam: Brix domain [PF04427.20, score=66.4]} {Human: ENSG00000136718, IMP4, IMP4, U3 small nucleolar ribonucleoprotein, [Score=258, Expect=3e-85]} {Mouse: ENSMUSG00000026127, Imp4, IMP4, U3 small nucleolar ribonucleoprotein, [Score=258, Expect=2e-85]} {Dmel: FBgn0039274, CG11920, [Score=244, Expect=3e-80]} {Celegans: WBGene00014083, ZK795.3, Brix domain-containing protein ZK795.3, [Score=269, Expect=4e-90]} {Smed: dd_Smed_v6_7284_0_1, dd_Smed_v6_7284_0_1, [Score=216, Expect=4e-69]} {RNA1509_5070} {RNA1310_32305.1} {RNA815_15104}
2. MligTC455_49649 277 5.78 Mlig455_045917, Mlig455_046096

Neo: Irradiation

Age: -

 ERCC8 0.982 - - - 0.982 - -

Mlig455_045917 {REF} {Length: 2112} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=86.2]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=37.5]} {Human: ENSG00000049167, ERCC8, ERCC excision repair 8, CSA ubiquitin ligase complex subunit, [RH, Score=228, Expect=2e-70]} {Mouse: ENSMUSG00000021694, Ercc8, excision repaiross-complementing rodent repair deficiency, complementation group 8, [RH, Score=239, Expect=1e-74]} {Dmel: FBgn0027524, CG3909, [Score=62.8, Expect=1e-10]} {Celegans: WBGene00004312, rba-1, Probable histone-binding protein rba-1, [Score=53.9, Expect=1e-07]} {Smed: dd_Smed_v6_9396_0_1, dd_Smed_v6_9396_0_1, [RH, Score=197, Expect=2e-59]} {RNA1509_40956} {RNA1310_16657, RNA1509_40956} {RNA1509_40956, RNA815_22444}

Mlig455_046096 {REF} {Length: 1921} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=74.3]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=28.2]} {Human: ENSG00000049167, ERCC8, ERCC excision repair 8, CSA ubiquitin ligase complex subunit, [Score=206, Expect=2e-62]} {Mouse: ENSMUSG00000021694, Ercc8, excision repaiross-complementing rodent repair deficiency, complementation group 8, [Score=214, Expect=6e-66]} {Dmel: FBgn0040066, wds, will die slowly, [Score=59.3, Expect=2e-09]} {Celegans: WBGene00013862, wdr-5.3, WD repeat-containing protein wdr-5.3, [Score=58.9, Expect=2e-09]} {Smed: dd_Smed_v6_9396_0_1, dd_Smed_v6_9396_0_1, [Score=181, Expect=7e-54]} {RNA1509_40956, RNA1509_43116} {RNA1310_16657, RNA1509_43116} {RNA1509_43116, RNA815_22444}
3. MligTC455_09656 14 0.3 Mlig455_008782

Neo: -

Age: -

 0.974 - - - - 0.974 - Mlig455_008782 {REF} {Length: 329} {NoTransDecoderORF}
4. MligTC455_02584 24 0.5 Mlig455_055916, Mlig455_068197

Neo: -

Age: -

 0.973 - - - - 0.973 -

Mlig455_055916 {REF} {Length: 909} {NoTransDecoderORF} {RNA1310_95801}

Mlig455_068197 {REF} {Length: 4502} {Pfam: Coiled-coil domain-containing protein 154 [PF15450.8, score=27.8]} {Smed: dd_Smed_v6_10236_0_1, dd_Smed_v6_10236_0_1, [Score=70.9, Expect=1e-12]} {RNA1310_36169} {RNA815_22237}
5. MligTC455_52460 637 13.28 Mlig455_005945

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=4.277

 0.972 - - - - 0.972 - Mlig455_005945 {REF} {Length: 1531} {Pfam: Kazal-type serine protease inhibitor domain [PF00050.23, score=105.7]; Kazal-type serine protease inhibitor domain [PF07648.17, score=90.0]} {Mouse: ENSMUSG00000041936, Agrn, agrin, [Score=52.4, Expect=5e-07]} {Dmel: FBgn0052354, CG32354, [Score=47.8, Expect=9e-06]} {Celegans: WBGene00009257, F29G6.1, [Score=49.7, Expect=2e-06]} {Smed: dd_Smed_v6_3649_0_1, dd_Smed_v6_3649_0_1, [Score=63.2, Expect=7e-11]} {RNA1509_43736} {RNA1310_32111} {RNA815_6190}
6. MligTC455_13038 60 1.25 Mlig455_044479

Neo: -

Age: -

Region-enriched R6: 4.393/0.00410

 0.968 - - - - 0.968 - Mlig455_044479 {REF} {Length: 663}
7. MligTC455_31867 118 2.46 Mlig455_015324

Neo: -

Age: -

 0.967 - - - 0.967 - - Mlig455_015324 {REF} {Length: 4165} {Pfam: Bacterial transferase hexapeptide (six repeats) [PF00132.26, score=18.7]} {RNA1509_44743, RNA1509_45704, RNA1509_45713, RNA1509_55716} {RNA1310_5450.1, RNA1509_45704, RNA1509_45713, RNA1509_55716} {RNA1509_45704, RNA1509_45713, RNA1509_55716, RNA815_16253.2}
8. MligTC455_33177 102 2.12 Mlig455_064812

Neo: -

Age: -

 0.96 - - - 0.960 - - Mlig455_064812 {REF} {Length: 2741} {RNA1509_801} {RNA1310_53126} {RNA815_1839.1}
9. MligTC455_53648 156 3.26 Mlig455_021410

Neo: -

Age: logFC(26M/2M)=0.705

 0.951 - - - - 0.951 - Mlig455_021410 {REF} {Length: 1272} {TRANSSPLICED} {RNA1509_43777} {RNA1310_53190, RNA1509_43777} {RNA1509_43777, RNA815_39476}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA