M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_49768

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_49768 145 3.02 Mlig455_004270

Neo: -

Age: Up-Down-Down

 ANOS1 Mlig455_004270 {REF} {Length: 4160} {Pfam: Fibronectin type III domain [PF00041.23, score=82.4]} {Human: ENSG00000011201, ANOS1, anosmin 1, [Score=108, Expect=2e-23]} {Dmel: FBgn0039155, Kal1, Kallmann syndrome 1, [Score=79.3, Expect=8e-15]} {Celegans: WBGene00002181, kal-1, KALlmann syndrome homolog, [Score=78.6, Expect=1e-14]} {Smed: dd_Smed_v6_10075_0_1, dd_Smed_v6_10075_0_1, [Score=176, Expect=3e-45]} {RNA1509_44032} {RNA1310_20852} {RNA815_15013}

Cumulative graph for MligTC455_49768

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.952 1.906 0.46811 1.00000
RegionR2 1.306 1.906 0.27461 0.65958
RegionR3 -1.73 1.906 0.99820 1.00000
RegionR4 -0.827 1.906 0.98293 1.00000
RegionR5 -1.985 1.906 0.99925 1.00000
RegionR6 1.888 1.906 0.03875 0.36926
RegionR7 2.638 1.906 0.00886 0.15956
RegionR8 2.663 1.906 0.01668 0.25196

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.287 1.906 1.00000 1.00000
RegenerationR2 -0.54 1.906 0.50672 0.87419
RegenerationR3 -0.71 1.906 0.57937 0.89864
RegenerationR4 -1.224 1.906 0.32890 0.76389
RegenerationR5 2.011 1.906 0.06265 0.39733
RegenerationR6 -1.032 1.906 0.28034 0.62974
RegenerationBL -0.158 1.906 0.85730 1.00000
RegenerationTP -1.736 1.906 0.10180 0.49577


Genes with expression patterns similar to MligTC455_49768

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_49768 145 3.02 Mlig455_004270

Neo: -

Age: Up-Down-Down

 ANOS1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_004270 {REF} {Length: 4160} {Pfam: Fibronectin type III domain [PF00041.23, score=82.4]} {Human: ENSG00000011201, ANOS1, anosmin 1, [Score=108, Expect=2e-23]} {Dmel: FBgn0039155, Kal1, Kallmann syndrome 1, [Score=79.3, Expect=8e-15]} {Celegans: WBGene00002181, kal-1, KALlmann syndrome homolog, [Score=78.6, Expect=1e-14]} {Smed: dd_Smed_v6_10075_0_1, dd_Smed_v6_10075_0_1, [Score=176, Expect=3e-45]} {RNA1509_44032} {RNA1310_20852} {RNA815_15013}
2. MligTC455_49223 194 4.04 Mlig455_051164

Neo: -

Age: -

 1.757 - - - 0.805 0.952 - Mlig455_051164 {REF} {Length: 1528} {Smed: dd_Smed_v6_12148_0_2, dd_Smed_v6_12148_0_2, [Score=98.2, Expect=3e-24]} {RNA1509_45032} {RNA1310_28402} {RNA815_16677}
3. MligTC455_21879 987 20.57 Mlig455_028749

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.988

Region-enriched R4: 2.660/0.01053

 TRPM1 1.719 0.954 - - - - 0.765 Mlig455_028749 {REF} {Length: 5114} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=44.7]; Ankyrin repeats (many copies) [PF13857.8, score=36.6]; Ankyrin repeats (many copies) [PF13637.8, score=36.5]; Ion transport protein [PF00520.33, score=36.3]; Ankyrin repeat [PF13606.8, score=26.5]; Ankyrin repeat [PF00023.32, score=25.9]} {Human: ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=71.6, Expect=1e-11]; ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=71.6, Expect=1e-11]; ENSG00000092439, TRPM7, transient receptor potential cation channel subfamily M member 7, [Score=70.5, Expect=2e-11]} {Mouse: ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=72.8, Expect=3e-12]; ENSMUSG00000027365, Trpm7, transient receptor potential cation channel, subfamily M, member 7, [Score=72.0, Expect=5e-12]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=58.2, Expect=6e-08]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=71.2, Expect=5e-12]} {Smed: dd_Smed_v6_17981_0_1, dd_Smed_v6_17981_0_1, [Score=90.9, Expect=3e-18]} {RNA1509_7199} {RNA1310_2316} {RNA815_581}
4. MligTC455_33979 345 7.18 Mlig455_021634, Mlig455_021687

Neo: -

Age: Up-Down-Down

Region-enriched R6: 2.317/0.04233

 FAT4 1.717 - - - 0.967 - 0.750

Mlig455_021634 {REF} {Length: 15637} {Pfam: Cadherin domain [PF00028.19, score=1053.7]; Cadherin-like [PF08266.14, score=72.1]; Cadherin-like [PF16184.7, score=70.5]; EGF-like domain [PF00008.29, score=63.5]; Laminin G domain [PF02210.26, score=34.1]; Cadherin prodomain like [PF08758.13, score=32.3]; Human growth factor-like EGF [PF12661.9, score=29.7]; RET Cadherin like domain 1 [PF17756.3, score=23.0]; Calcium-binding EGF domain [PF07645.17, score=20.1]} {Human: ENSG00000196159, FAT4, FAT atypical cadherin 4, [Score=1268, Expect=0.0]} {Mouse: ENSMUSG00000046743, Fat4, FAT atypical cadherin 4, [RH, Score=1254, Expect=0.0]} {Dmel: FBgn0001075, ft, fat, [Score=1296, Expect=0.0]} {Celegans: WBGene00019994, cdh-1, CaDHerin family, [Score=261, Expect=4e-69]} {Smed: dd_Smed_v6_12707_0_1, dd_Smed_v6_12707_0_1, [RH, Score=739, Expect=0.0]} {RNA1509_5577, RNA1509_58023} {RNA1310_180, RNA1509_58023} {RNA1509_58023, RNA815_3956}

Mlig455_021687 {REF} {Length: 14771} {Pfam: Cadherin domain [PF00028.19, score=850.5]; EGF-like domain [PF00008.29, score=64.7]; Cadherin-like [PF08266.14, score=63.5]; Cadherin-like [PF16184.7, score=48.8]; Laminin G domain [PF02210.26, score=33.7]; Human growth factor-like EGF [PF12661.9, score=28.7]; Calcium-binding EGF domain [PF07645.17, score=20.4]} {Human: ENSG00000196159, FAT4, FAT atypical cadherin 4, [Score=879, Expect=0.0]} {Mouse: ENSMUSG00000046743, Fat4, FAT atypical cadherin 4, [Score=868, Expect=0.0]} {Dmel: FBgn0001075, ft, fat, [Score=949, Expect=0.0]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=238, Expect=5e-62]} {Smed: dd_Smed_v6_12707_0_1, dd_Smed_v6_12707_0_1, [RH, Score=446, Expect=3e-125]} {RNA1509_5577} {RNA1310_12081} {RNA815_14856}
5. MligTC455_20956 77 1.6 Mlig455_008761

Neo: -

Age: Up-Down-Down

Region-enriched R8: 3.712/0.03504

 GLRA3 0.987 - - - - 0.987 - Mlig455_008761 {REF} {Length: 3739} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=146.1]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=124.8]} {Human: ENSG00000145451, GLRA3, glycine receptor alpha 3, [RH, Score=344, Expect=7e-114]; ENSG00000145888, GLRA1, glycine receptor alpha 1, [RH, Score=338, Expect=2e-111]} {Mouse: ENSMUSG00000038257, Glra3, glycine receptor, alpha 3 subunit, [RH, Score=342, Expect=5e-113]; ENSMUSG00000000263, Glra1, glycine receptor, alpha 1 subunit, [RH, Score=336, Expect=7e-111]} {Dmel: FBgn0024963, GluClalpha, [RH, Score=291, Expect=2e-93]} {Celegans: WBGene00001593, glc-3, Glutamate-gated ChLoride channel; Glutamate-gated chloride channel subunit, [RH, Score=256, Expect=7e-80]} {Smed: dd_Smed_v6_10794_0_1, dd_Smed_v6_10794_0_1, [Score=253, Expect=1e-78]} {RNA1310_38552.1} {RNA815_6481}
6. MligTC455_07411 19 0.39 Mlig455_024512

Neo: -

Age: -

 0.981 - - - - 0.981 - Mlig455_024512 {REF} {Length: 1125} {NoTransDecoderORF} {RNA1310_46833}
7. MligTC455_16815 51 1.07 Mlig455_038730

Neo: -

Age: -

 KCNC1 0.98 - - - - 0.980 - Mlig455_038730 {REF} {Length: 3802} {Pfam: Ion transport protein [PF00520.33, score=148.9]; BTB/POZ domain [PF02214.24, score=99.7]; Ion channel [PF07885.18, score=45.1]} {Human: ENSG00000129159, KCNC1, potassium voltage-gated channel subfamily C member 1, [RH, Score=425, Expect=1e-141]; ENSG00000166006, KCNC2, potassium voltage-gated channel subfamily C member 2, [RH, Score=425, Expect=2e-141]; ENSG00000116396, KCNC4, potassium voltage-gated channel subfamily C member 4, [RH, Score=404, Expect=7e-133]} {Mouse: ENSMUSG00000058975, Kcnc1, potassium voltage gated channel, Shaw-related subfamily, member 1, [RH, Score=425, Expect=7e-142]; ENSMUSG00000035681, Kcnc2, potassium voltage gated channel, Shaw-related subfamily, member 2, [RH, Score=411, Expect=2e-135]; ENSMUSG00000062785, Kcnc3, potassium voltage gated channel, Shaw-related subfamily, member 3, [RH, Score=409, Expect=2e-133]} {Dmel: FBgn0003386, Shaw, Shaker cognate w, [RH, Score=697, Expect=0.0]} {Celegans: WBGene00008819, shw-1, SHaW family of potassium channels, [RH, Score=594, Expect=0.0]} {Smed: dd_Smed_v6_9740_0_1, dd_Smed_v6_9740_0_1, [RH, Score=686, Expect=0.0]} {RNA1310_23163} {RNA815_9933.1}
8. MligTC455_33441 27 0.55 Mlig455_068537

Neo: -

Age: Down-Up-Down

 GRID1 0.98 - - - - 0.980 - Mlig455_068537 {REF} {Length: 3049} {Pfam: Ligand-gated ion channel [PF00060.28, score=77.4]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=46.3]; Receptor family ligand binding region [PF01094.30, score=43.7]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=38.3]} {Human: ENSG00000182771, GRID1, glutamate ionotropic receptor delta type subunit 1, [Score=156, Expect=6e-39]} {Mouse: ENSMUSG00000041078, Grid1, glutamate receptor, ionotropic, delta 1, [Score=153, Expect=1e-37]} {Dmel: FBgn0038837, CG3822, [Score=125, Expect=4e-29]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=117, Expect=8e-27]} {Smed: dd_Smed_v6_21015_0_1, dd_Smed_v6_21015_0_1, [Score=259, Expect=3e-78]} {RNA1310_13880.2} {RNA815_12458}
9. MligTC455_43789 48 0.99 Mlig455_029925

Neo: -

Age: -

 FARP1 0.978 - - - - 0.978 - Mlig455_029925 {REF} {Length: 2354} {Pfam: PH domain [PF00169.31, score=54.9]; RhoGEF domain [PF00621.22, score=25.8]} {Human: ENSG00000152767, FARP1, FERM, ARH/RhoGEF and pleckstrin domain protein 1, [Score=153, Expect=2e-38]} {Mouse: ENSMUSG00000034066, Farp2, FERM, RhoGEF and pleckstrin domain protein 2, [Score=151, Expect=7e-38]; ENSMUSG00000025555, Farp1, FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived), [Score=149, Expect=3e-37]} {Dmel: FBgn0265082, Cdep, Chondrocyte-derived ezrin-like domain containing protein, [Score=118, Expect=2e-27]} {Celegans: WBGene00001490, frm-3, FERM domain (Protein4.1-ezrin-radixin-moesin) family, [Score=91.7, Expect=3e-19]} {Smed: dd_Smed_v6_14700_0_1, dd_Smed_v6_14700_0_1, [Score=154, Expect=2e-39]} {RNA1509_30091} {RNA1310_43814.1} {RNA815_20350}
10. MligTC455_17809 89 1.85 Mlig455_066801, Mlig455_066865

Neo: -

Age: -

 0.969 - - - - 0.969 -

Mlig455_066801 {REF} {Length: 1886} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=41.4]} {Smed: dd_Smed_v6_54490_0_1, dd_Smed_v6_54490_0_1, [Score=46.2, Expect=3e-06]} {RNA1310_22785} {RNA815_13697}

Mlig455_066865 {REF} {Length: 1886} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=41.2]} {Smed: dd_Smed_v6_54490_0_1, dd_Smed_v6_54490_0_1, [Score=46.6, Expect=3e-06]} {RNA1310_22785} {RNA815_13697}
11. MligTC455_29808 204 4.26 Mlig455_056288

Neo: Int S/G2/M

Age: -

Region-enriched R4: 3.556/0.04090

 MCM3AP 0.969 - - - - 0.969 - Mlig455_056288 {REF} {Length: 6365} {Pfam: SAC3/GANP family [PF03399.18, score=315.0]} {Human: ENSG00000160294, MCM3AP, minichromosome maintenance complex component 3 associated protein, [RH, Score=330, Expect=2e-91]} {Mouse: ENSMUSG00000001150, Mcm3ap, minichromosome maintenance complex component 3 associated protein, [RH, Score=328, Expect=7e-91]} {Dmel: FBgn0028974, xmas-2, [RH, Score=289, Expect=3e-79]} {Celegans: WBGene00017642, F20D12.2, [RH, Score=210, Expect=7e-55]} {Smed: dd_Smed_v6_10065_0_1, dd_Smed_v6_10065_0_1, [RH, Score=273, Expect=3e-75]} {RNA1509_12513} {RNA1310_1606} {RNA815_453.1}
12. MligTC455_44339 100 2.08 Mlig455_001551

Neo: -

Age: -

 GPR158 0.965 - - - - 0.965 - Mlig455_001551 {REF} {Length: 3428} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=94.6]} {Human: ENSG00000151025, GPR158, G protein-coupled receptor 158, [RH, Score=246, Expect=6e-68]; ENSG00000276469, GPR179, G protein-coupled receptor 179, [RH, Score=240, Expect=2e-65]; ENSG00000277399, GPR179, G protein-coupled receptor 179, [RH, Score=234, Expect=2e-63]} {Mouse: ENSMUSG00000070337, Gpr179, G protein-coupled receptor 179, [RH, Score=253, Expect=6e-70]; ENSMUSG00000045967, Gpr158, G protein-coupled receptor 158, [RH, Score=251, Expect=8e-70]} {Dmel: FBgn0051660, smog, [RH, Score=293, Expect=1e-85]} {Celegans: WBGene00009558, F39B2.8, [Score=194, Expect=8e-53]} {Smed: dd_Smed_v6_8408_0_1, dd_Smed_v6_8408_0_1, [RH, Score=359, Expect=1e-112]} {RNA1509_37699} {RNA1310_6430} {RNA815_19661}
13. MligTC455_13795 10 0.22 Mlig455_049344

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_049344 {REF} {Length: 485} {NoTransDecoderORF} {RNA1310_71916}
14. MligTC455_36762 10 0.21 Mlig455_057461

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_057461 {REF} {Length: 1806} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=24.8]} {Smed: dd_Smed_v6_38501_0_1, dd_Smed_v6_38501_0_1, [Score=155, Expect=6e-43]}
15. MligTC455_43611 93 1.94 Mlig455_047359, Mlig455_047360

Neo: -

Age: -

 0.964 - - - - 0.964 -

Mlig455_047359 {REF} {Length: 707} {NoTransDecoderORF} {RNA1310_133647}

Mlig455_047360 {REF} {Length: 911} {NoTransDecoderORF} {RNA1310_133647}
16. MligTC455_31615 336 7 Mlig455_042153, Mlig455_065866

Neo: -

Age: -

 USP5 0.963 - - - - 0.963 -

Mlig455_042153 {REF} {Length: 1274} {TRANSSPLICED} {Pfam: Zn-finger in ubiquitin-hydrolases and other protein [PF02148.21, score=61.6]} {Human: ENSG00000111667, USP5, ubiquitin specific peptidase 5, [Score=211, Expect=2e-64]} {Mouse: ENSMUSG00000038429, Usp5, ubiquitin specific peptidase 5 (isopeptidase T), [Score=209, Expect=4e-64]} {Dmel: FBgn0035402, Usp5, Ubiquitin specific protease 5, [Score=200, Expect=6e-61]} {Celegans: WBGene00020839, usp-5, Ubiquitinyl hydrolase 1, [Score=119, Expect=2e-32]} {Smed: dd_Smed_v6_3655_0_1, dd_Smed_v6_3655_0_1, [Score=185, Expect=2e-58]} {RNA1509_20040} {RNA1310_16514.1} {RNA815_39489}

Mlig455_065866 {REF} {Length: 2979} {TRANSSPLICED} {Pfam: Squalene/phytoene synthase [PF00494.21, score=103.7]; Zn-finger in ubiquitin-hydrolases and other protein [PF02148.21, score=58.7]} {Human: ENSG00000111667, USP5, ubiquitin specific peptidase 5, [Score=208, Expect=9e-59]} {Mouse: ENSMUSG00000038429, Usp5, ubiquitin specific peptidase 5 (isopeptidase T), [Score=207, Expect=2e-58]} {Dmel: FBgn0035402, Usp5, Ubiquitin specific protease 5, [Score=199, Expect=1e-55]} {Celegans: WBGene00020839, usp-5, Ubiquitinyl hydrolase 1, [Score=122, Expect=2e-29]} {Smed: dd_Smed_v6_3655_0_1, dd_Smed_v6_3655_0_1, [Score=182, Expect=6e-53]} {RNA1509_48859} {RNA1310_18155} {RNA815_13377}
17. MligTC455_33725 46 0.96 Mlig455_059862

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_059862 {REF} {Length: 2526} {tRNA: Asp(GTC), score=67.3} {RNA1310_22634} {RNA815_27671}
18. MligTC455_10297 15 0.32 Mlig455_015788

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_015788 {REF} {Length: 484} {NoTransDecoderORF} {RNA1509_25850} {RNA1310_7880} {RNA815_2645}
19. MligTC455_19759 18 0.39 Mlig455_002694, Mlig455_002710

Neo: -

Age: -

 0.962 - - - - 0.962 -

Mlig455_002694 {REF} {Length: 1408} {RNA1310_38437} {RNA815_40458}

Mlig455_002710 {REF} {Length: 1745} {RNA1310_38437} {RNA815_40458}
20. MligTC455_44612 24 0.49 Mlig455_006206, Mlig455_059294

Neo: -

Age: -

 0.962 - - - - 0.962 -

Mlig455_006206 {REF} {Length: 506} {NoTransDecoderORF} {RNA1509_43593} {RNA1310_56719} {RNA815_29718}

Mlig455_059294 {REF} {Length: 1181} {Pfam: PAN domain [PF00024.28, score=19.3]} {Smed: dd_Smed_v6_42798_0_1, dd_Smed_v6_42798_0_1, [Score=66.2, Expect=3e-13]} {RNA1509_35604} {RNA1310_34182} {RNA815_29718}
21. MligTC455_15240 11 0.23 Mlig455_051415

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_051415 {REF} {Length: 607} {NoTransDecoderORF}
22. MligTC455_37305 39 0.81 Mlig455_029478

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.597

 0.958 - - - - 0.958 - Mlig455_029478 {REF} {Length: 3097} {Smed: dd_Smed_v6_9825_0_1, dd_Smed_v6_9825_0_1, [Score=53.9, Expect=2e-07]} {RNA1509_42508, RNA1509_53631} {RNA1310_33865.1, RNA1509_42508, RNA1509_53631} {RNA1509_42508, RNA1509_53631, RNA815_36519}
23. MligTC455_15460 271 5.65 Mlig455_001644, Mlig455_001708

Neo: -

Age: -

Region-enriched R8: 3.592/0.03504
Region-enriched R7: 3.324/0.02643

 0.957 - - - - 0.957 -

Mlig455_001644 {REF} {Length: 1595} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=28.7]} {Smed: dd_Smed_v6_19599_0_1, dd_Smed_v6_19599_0_1, [Score=137, Expect=2e-36]} {RNA1509_56048} {RNA1310_10124} {RNA815_17803}

Mlig455_001708 {REF} {Length: 2658} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=151.7]} {Celegans: WBGene00022815, asic-1, Degenerin-like protein asic-1, [Score=50.8, Expect=2e-06]} {Smed: dd_Smed_v6_28097_0_1, dd_Smed_v6_28097_0_1, [Score=332, Expect=4e-107]} {RNA1509_56048} {RNA1310_10124, RNA1509_56048} {RNA1509_56048, RNA815_17803}
24. MligTC455_51473 175 3.64 Mlig455_033087

Neo: -

Age: Up-Down-Up

 LITAF 0.956 - - - - 0.956 - Mlig455_033087 {REF} {Length: 2038} {Pfam: LITAF-like zinc ribbon domain [PF10601.11, score=90.8]} {Human: ENSG00000189067, LITAF, lipopolysaccharide induced TNF factor, [Score=75.5, Expect=6e-17]; ENSG00000274336, CDIP1, cell death inducing p53 target 1, [Score=73.9, Expect=3e-16]; ENSG00000089486, CDIP1, cell death inducing p53 target 1, [Score=73.9, Expect=3e-16]} {Mouse: ENSMUSG00000022500, Litaf, LPS-induced TN factor, [Score=79.3, Expect=1e-18]} {Dmel: FBgn0052280, CG32280, [Score=72.0, Expect=3e-16]} {Celegans: WBGene00009484, F36G3.3, [Score=65.5, Expect=9e-14]} {Smed: dd_Smed_v6_26606_0_1, dd_Smed_v6_26606_0_1, [RH, Score=84.0, Expect=2e-21]} {RNA1310_45914} {RNA815_12450}
25. MligTC455_08352 14 0.29 Mlig455_017214

Neo: Irradiation

Age: Down-Down-Up

 APEX1 0.955 - - - - 0.955 - Mlig455_017214 {REF} {Length: 1458} {TRANSSPLICED} {Pfam: Endonuclease/Exonuclease/phosphatase family [PF03372.25, score=69.4]; Endonuclease-reverse transcriptase [PF14529.8, score=24.9]} {Human: ENSG00000100823, APEX1, apurinic/apyrimidinic endodeoxyribonuclease 1, [RH, Score=305, Expect=2e-100]} {Mouse: ENSMUSG00000035960, Apex1, apurinic/apyrimidinic endonuclease 1, [RH, Score=310, Expect=1e-102]} {Dmel: FBgn0004584, Rrp1, Recombination repair protein 1, [RH, Score=302, Expect=3e-95]} {Celegans: WBGene00001372, exo-3, DNA-(apurinic or apyrimidinic site) lyase, [RH, Score=238, Expect=3e-75]} {Smed: dd_Smed_v6_11417_0_1, dd_Smed_v6_11417_0_1, [RH, Score=338, Expect=8e-114]} {RNA1509_16413} {RNA1310_25554} {RNA815_11218.1}
26. MligTC455_41803 24 0.5 Mlig455_001656

Neo: -

Age: -

 TBL1XR1 0.953 - - - - 0.953 - Mlig455_001656 {REF} {Length: 1963} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=159.4]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=105.4]; Eukaryotic translation initiation factor eIF2A [PF08662.13, score=40.8]; Coatomer WD associated region [PF04053.16, score=26.2]; LisH [PF08513.13, score=24.5]} {Human: ENSG00000177565, TBL1XR1, transducin beta like 1 X-linked receptor 1, [RH, Score=689, Expect=0.0]; ENSG00000101849, TBL1X, transducin beta like 1 X-linked, [RH, Score=684, Expect=0.0]; ENSG00000092377, TBL1Y, transducin beta like 1 Y-linked, [RH, Score=677, Expect=0.0]} {Mouse: ENSMUSG00000027630, Tbl1xr1, transducin (beta)-like 1X-linked receptor 1, [RH, Score=694, Expect=0.0]; ENSMUSG00000025246, Tbl1x, transducin (beta)-like 1 X-linked, [RH, Score=684, Expect=0.0]} {Dmel: FBgn0263933, ebi, [RH, Score=573, Expect=0.0]} {Celegans: WBGene00021074, W07E6.2, [Score=110, Expect=7e-26]} {Smed: dd_Smed_v6_3247_0_1, dd_Smed_v6_3247_0_1, [RH, Score=519, Expect=2e-180]} {RNA1509_57475} {RNA1310_6496.1, RNA1509_57475} {RNA1509_57475, RNA815_1670}
27. MligTC455_33949 219 4.56 Mlig455_030087, Mlig455_043225

Neo: -

Age: Down-Down-Down

 THAP9 0.952 - - - 0.952 - -

Mlig455_030087 {REF} {Length: 5685} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=117.4]; Transposase protein [PF12017.10, score=28.9]} {Human: ENSG00000168152, THAP9, THAP domain containing 9, [Score=212, Expect=5e-56]} {RNA1509_45496} {RNA1310_1582} {RNA815_252.1}

Mlig455_043225 {REF} {Length: 3516} {RNA1509_29843} {RNA1310_14922.1} {RNA815_27718}
28. MligTC455_47943 83 1.73 Mlig455_018165, Mlig455_069944

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.888

 0.952 - - - - 0.952 -

Mlig455_018165 {REF} {Length: 2120} {RNA1509_50096} {RNA1310_19543, RNA1509_50096} {RNA1509_50096, RNA815_21860}

Mlig455_069944 {REF} {Length: 2117} {RNA1509_50096} {RNA1310_19543} {RNA815_21860}
29. MligTC455_03622 103 2.15 Mlig455_006088

Neo: -

Age: -

 0.95 - - - - - 0.950 Mlig455_006088 {REF} {Length: 1012} {NoTransDecoderORF} {RNA1509_45927} {RNA1310_55422.1} {RNA815_28217}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA