TomoSeq data search

Data search

Results for MligTC455_49984

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_49984

502

10.45

Mlig455_058735

Neo: -

Age: -

DYNC1LI1

Mlig455_058735 {REF} {Length: 3066} {Pfam: Dynein light intermediate chain (DLIC) [PF05783.13, score=391.2]} {Human: ENSG00000144635, DYNC1LI1, dynein cytoplasmic 1 light intermediate chain 1, [RH, Score=300, Expect=3e-95]; ENSG00000135720, DYNC1LI2, dynein cytoplasmic 1 light intermediate chain 2, [RH, Score=289, Expect=4e-91]} {Mouse: ENSMUSG00000032435, Dync1li1, dynein cytoplasmic 1 light intermediate chain 1, [RH, Score=300, Expect=2e-95]; ENSMUSG00000035770, Dync1li2, dynein, cytoplasmic 1 light intermediate chain 2, [RH, Score=298, Expect=5e-95]} {Dmel: FBgn0030276, Dlic, Dynein light intermediate chain, [RH, Score=296, Expect=4e-94]} {Celegans: WBGene00001007, dli-1, Dynein Light Intermediate chain, [RH, Score=139, Expect=1e-35]} {Smed: dd_Smed_v6_8444_0_1, dd_Smed_v6_8444_0_1, [RH, Score=315, Expect=3e-98]} {RNA1509_6530} {RNA1310_2016} {RNA815_15385.1}

Cumulative graph for MligTC455_49984

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-2.485	3.782	0.13570	0.73872
RegionR2	0.305	3.782	0.61542	0.96157
RegionR3	0.354	3.782	0.47980	0.98267
RegionR4	0.491	3.782	0.37300	0.69653
RegionR5	0.874	3.782	0.04074	0.16165
RegionR6	-0.23	3.782	0.67932	1.00000
RegionR7	0.051	3.782	0.93208	1.00000
RegionR8	0.64	3.782	0.36297	0.99781

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-4.576	3.782	0.45966	1.00000
RegenerationR2	0.325	3.782	0.47018	0.85796
RegenerationR3	0.018	3.782	0.96993	1.00000
RegenerationR4	0.179	3.782	0.72970	0.96440
RegenerationR5	0.203	3.782	0.65071	0.93263
RegenerationR6	0.951	3.782	0.07140	0.33378
RegenerationBL	-0.03	3.782	0.96167	1.00000
RegenerationTP	0.023	3.782	0.97065	1.00000

Genes with expression patterns similar to MligTC455_49984

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_49984	502	10.45	Mlig455_058735	Neo: - Age: -	DYNC1LI1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_058735 {REF} {Length: 3066} {Pfam: Dynein light intermediate chain (DLIC) [PF05783.13, score=391.2]} {Human: ENSG00000144635, DYNC1LI1, dynein cytoplasmic 1 light intermediate chain 1, [RH, Score=300, Expect=3e-95]; ENSG00000135720, DYNC1LI2, dynein cytoplasmic 1 light intermediate chain 2, [RH, Score=289, Expect=4e-91]} {Mouse: ENSMUSG00000032435, Dync1li1, dynein cytoplasmic 1 light intermediate chain 1, [RH, Score=300, Expect=2e-95]; ENSMUSG00000035770, Dync1li2, dynein, cytoplasmic 1 light intermediate chain 2, [RH, Score=298, Expect=5e-95]} {Dmel: FBgn0030276, Dlic, Dynein light intermediate chain, [RH, Score=296, Expect=4e-94]} {Celegans: WBGene00001007, dli-1, Dynein Light Intermediate chain, [RH, Score=139, Expect=1e-35]} {Smed: dd_Smed_v6_8444_0_1, dd_Smed_v6_8444_0_1, [RH, Score=315, Expect=3e-98]} {RNA1509_6530} {RNA1310_2016} {RNA815_15385.1}
2.	MligTC455_49983	659	13.72	Mlig455_056166	Neo: - Age: -	DYNC1LI2	4.587	0.962	0.896	0.972	0.876	0.881	-	Mlig455_056166 {REF} {Length: 3132} {Pfam: Dynein light intermediate chain (DLIC) [PF05783.13, score=415.9]} {Human: ENSG00000135720, DYNC1LI2, dynein cytoplasmic 1 light intermediate chain 2, [RH, Score=312, Expect=1e-99]} {Mouse: ENSMUSG00000035770, Dync1li2, dynein, cytoplasmic 1 light intermediate chain 2, [RH, Score=323, Expect=1e-104]} {Dmel: FBgn0030276, Dlic, Dynein light intermediate chain, [Score=311, Expect=7e-100]} {Celegans: WBGene00001007, dli-1, Dynein Light Intermediate chain, [Score=140, Expect=4e-36]} {Smed: dd_Smed_v6_8444_0_1, dd_Smed_v6_8444_0_1, [RH, Score=337, Expect=2e-106]} {RNA1509_57371, RNA1509_6530} {RNA1310_2016, RNA1509_57371} {RNA1509_57371, RNA815_15385.1}
3.	MligTC455_24211	545	11.35	Mlig455_025806	Neo: - Age: -	PRPSAP2	2.541	-	0.794	-	-	0.777	0.970	Mlig455_025806 {REF} {Length: 3917} {Pfam: Phosphoribosyl synthetase-associated domain [PF14572.8, score=259.9]; N-terminal domain of ribose phosphate pyrophosphokinase [PF13793.8, score=119.4]; Phosphoribosyl transferase domain [PF00156.29, score=29.0]} {Human: ENSG00000141127, PRPSAP2, phosphoribosyl pyrophosphate synthetase associated protein 2, [RH, Score=384, Expect=1e-131]} {Mouse: ENSMUSG00000020528, Prpsap2, phosphoribosyl pyrophosphate synthetase-associated protein 2, [RH, Score=381, Expect=9e-131]; ENSMUSG00000015869, Prpsap1, phosphoribosyl pyrophosphate synthetase-associated protein 1, [RH, Score=363, Expect=2e-123]} {Dmel: FBgn0039790, CG2246, [RH, Score=421, Expect=3e-146]} {Celegans: WBGene00012258, W04G3.5, [RH, Score=400, Expect=1e-138]} {Smed: dd_Smed_v6_4658_0_1, dd_Smed_v6_4658_0_1, [RH, Score=466, Expect=1e-164]} {RNA1509_17844} {RNA1310_7445} {RNA815_13869.1}
4.	MligTC455_12155	514	10.71	Mlig455_050403	Neo: Germline Age: - Region-enriched R5: 1.922/0.01975	DIS3L2	1.713	-	-	-	-	0.756	0.957	Mlig455_050403 {REF} {Length: 3948} {TRANSSPLICED} {Pfam: RNB domain [PF00773.21, score=286.6]; Dis3-like cold-shock domain 2 (CSD2) [PF17849.3, score=53.1]; DIS3-like exonuclease 2 C terminal [PF17877.3, score=37.3]; Rrp44-like cold shock domain [PF17216.5, score=28.7]} {Human: ENSG00000144535, DIS3L2, DIS3 like 3'-5' exoribonuclease 2, [RH, Score=490, Expect=3e-157]} {Mouse: ENSMUSG00000053333, Dis3l2, DIS3 like 3'-5' exoribonuclease 2, [RH, Score=494, Expect=3e-159]} {Dmel: FBgn0035111, Dis3l2, Dis3 like 3'-5' exoribonuclease 2, [RH, Score=301, Expect=5e-86]} {Celegans: WBGene00018612, disl-2, DIS3-like exonuclease 2, [RH, Score=440, Expect=4e-139]} {Smed: dd_Smed_v6_7044_0_1, dd_Smed_v6_7044_0_1, [RH, Score=487, Expect=4e-157]} {RNA1509_30644} {RNA1310_2522.1, RNA1509_30644} {RNA1509_30644, RNA815_1747}
5.	MligTC455_20885	323	6.74	Mlig455_050986	Neo: - Age: -	RAB11FIP4	1.689	-	-	0.733	0.956	-	-	Mlig455_050986 {REF} {Length: 3848} {Pfam: FIP domain [PF09457.12, score=39.7]} {Human: ENSG00000131242, RAB11FIP4, RAB11 family interacting protein 4, [RH, Score=120, Expect=2e-28]} {Mouse: ENSMUSG00000017639, Rab11fip4, RAB11 family interacting protein 4 (class II), [RH, Score=118, Expect=1e-27]} {Dmel: FBgn0013718, nuf, nuclear fallout, [RH, Score=106, Expect=4e-24]} {Celegans: WBGene00018869, rfip-1, Rab-11 Family Interacting-Protein, [RH, Score=98.6, Expect=1e-21]} {Smed: dd_Smed_v6_11969_0_1, dd_Smed_v6_11969_0_1, [RH, Score=130, Expect=2e-32]} {RNA1509_21143} {RNA1310_6422, RNA1509_21143} {RNA1509_21143, RNA815_8986.1}
6.	MligTC455_22023	338	7.03	Mlig455_046682	Neo: - Age: -	BMI1	0.98	-	-	-	-	-	0.980	Mlig455_046682 {REF} {Length: 3035} {TRANSSPLICED} {Pfam: RAWUL domain RING finger- and WD40-associated ubiquitin-like [PF16207.7, score=40.3]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=35.7]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=32.9]; Ring finger domain [PF13639.8, score=24.3]; RING-type zinc-finger [PF13445.8, score=22.5]; zinc-RING finger domain [PF14634.8, score=21.8]; Autophagy protein Atg8 ubiquitin like [PF02991.18, score=19.0]} {Human: ENSG00000168283, BMI1, BMI1 proto-oncogene, polycomb ring finger, [RH, Score=226, Expect=5e-72]; ENSG00000269897, COMMD3-BMI1, COMMD3-BMI1 readthrough, [RH, Score=226, Expect=2e-70]} {Mouse: ENSMUSG00000026739, Bmi1, Bmi1 polycomb ring finger oncogene, [RH, Score=221, Expect=2e-70]} {Dmel: FBgn0005624, Psc, Posterior sex combs, [RH, Score=165, Expect=1e-45]} {Celegans: WBGene00008684, mig-32, [Score=91.3, Expect=2e-20]} {Smed: dd_Smed_v6_12753_0_1, dd_Smed_v6_12753_0_1, [RH, Score=168, Expect=1e-50]} {RNA1509_51655} {RNA1310_33482.1, RNA1509_51655} {RNA1509_51655, RNA815_18976}
7.	MligTC455_37863	213	4.44	Mlig455_015363	Neo: - Age: Up-Down-Down	NBAS	0.977	-	-	-	-	-	0.977	Mlig455_015363 {REF} {Length: 8517} {TRANSSPLICED} {Pfam: Secretory pathway protein Sec39 [PF08314.13, score=51.4]; Neuroblastoma-amplified sequence, N terminal [PF15492.8, score=33.5]} {Human: ENSG00000151779, NBAS, neuroblastoma amplified sequence, [RH, Score=384, Expect=1e-106]} {Mouse: ENSMUSG00000020576, Nbas, neuroblastoma amplified sequence, [RH, Score=413, Expect=6e-116]} {Celegans: WBGene00008990, smgl-1, [RH, Score=55.5, Expect=5e-07]} {Smed: dd_Smed_v6_7998_0_1, dd_Smed_v6_7998_0_1, [RH, Score=206, Expect=1e-52]} {RNA1509_11685, RNA1509_55641} {RNA1310_353.1, RNA1509_11685, RNA1509_55641} {RNA1509_11685, RNA1509_55641, RNA815_138}
8.	MligTC455_46128	405	8.45	Mlig455_009070	Neo: Int S/G2/M Age: Down-Up-Down, logFC(26M/2M)=2.749		0.973	-	-	-	-	-	0.973	Mlig455_009070 {REF} {Length: 2786} {RNA1509_26637, RNA1509_34188} {RNA1310_30874, RNA1509_26637} {RNA1509_26637, RNA815_17123}
9.	MligTC455_16378	713	14.86	Mlig455_038591	Neo: - Age: - Region-enriched R5: 2.307/0.00005 Region-enriched R4: 1.670/0.04306 Regeneration-upregulated TP: 4.678 Regeneration-enriched TP: 4.678	MCAT	0.96	-	-	-	-	-	0.960	Mlig455_038591 {REF} {Length: 1381} {TRANSSPLICED} {Pfam: Acyl transferase domain [PF00698.23, score=80.3]} {Human: ENSG00000100294, MCAT, malonyl-CoA-acyl carrier protein transacylase, [RH, Score=273, Expect=4e-88]} {Mouse: ENSMUSG00000048755, Mcat, malonyl CoA:ACP acyltransferase (mitochondrial), [RH, Score=268, Expect=1e-86]} {Dmel: FBgn0036691, beg, bad egg, [RH, Score=273, Expect=1e-88]} {Celegans: WBGene00016812, C50D2.9, [RH, Score=215, Expect=3e-66]} {Smed: dd_Smed_v6_10612_0_2, dd_Smed_v6_10612_0_2, [RH, Score=256, Expect=2e-82]} {RNA1509_14588, RNA1509_24521, RNA1509_27650} {RNA1310_12229, RNA1509_14588, RNA1509_24521, RNA1509_27650} {RNA1509_14588, RNA1509_24521, RNA1509_27650, RNA815_4030}
10.	MligTC455_45105	609	12.68	Mlig455_042122	Neo: - Age: -	QRICH2	0.957	-	-	-	-	-	0.957	Mlig455_042122 {REF} {Length: 1526} {TRANSSPLICED} {Pfam: Spt5 C-terminal nonapeptide repeat binding Spt4 [PF12815.9, score=46.3]} {Human: ENSG00000129646, QRICH2, glutamine rich 2, [Score=59.7, Expect=9e-10]} {Mouse: ENSMUSG00000045350, Fam186a, family with sequence similarity 186, member A, [RH, Score=70.1, Expect=2e-13]} {RNA1310_22924.1} {RNA815_30357.2}
11.	MligTC455_23644	492	10.25	Mlig455_026068, Mlig455_037312	Neo: - Age: - Region-enriched R5: 2.322/0.00401		0.956	-	-	0.956	-	-	-	Mlig455_026068 {REF} {Length: 3653} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=33.8]; Striatin family [PF08232.14, score=21.0]} {Smed: dd_Smed_v6_7378_0_1, dd_Smed_v6_7378_0_1, [Score=52.0, Expect=6e-08]} {RNA1509_13710} {RNA1310_7068} {RNA815_10709} Mlig455_037312 {REF} {Length: 3770} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=39.8]} {Smed: dd_Smed_v6_7378_0_2, dd_Smed_v6_7378_0_2, [RH, Score=53.9, Expect=3e-08]} {RNA1509_13710} {RNA1310_7068} {RNA815_10709}
12.	MligTC455_17303	318	6.62	Mlig455_068164	Neo: - Age: -	TDG	0.955	-	-	-	-	-	0.955	Mlig455_068164 {REF} {Length: 7284} {TRANSSPLICED} {Pfam: Uracil DNA glycosylase superfamily [PF03167.21, score=132.9]} {Human: ENSG00000139372, TDG, thymine DNA glycosylase, [RH, Score=206, Expect=2e-57]} {Mouse: ENSMUSG00000034674, Tdg, thymine DNA glycosylase, [RH, Score=208, Expect=2e-58]} {Dmel: FBgn0026869, Thd1, [Score=253, Expect=7e-68]} {Smed: dd_Smed_v6_9424_0_1, dd_Smed_v6_9424_0_1, [Score=324, Expect=2e-97]} {RNA1509_28066} {RNA1310_15535} {RNA815_10224}
13.	MligTC455_21092	581	12.11	Mlig455_014955	Neo: - Age: -	LRP3	0.953	-	-	-	-	-	0.953	Mlig455_014955 {REF} {Length: 2087} {TRANSSPLICED} {Pfam: Low-density lipoprotein receptor domain class A [PF00057.20, score=53.2]} {Human: ENSG00000130881, LRP3, LDL receptor related protein 3, [Score=115, Expect=1e-27]} {Mouse: ENSMUSG00000001802, Lrp3, low density lipoprotein receptor-related protein 3, [RH, Score=114, Expect=1e-27]} {Dmel: FBgn0053087, LRP1, LDL receptor protein 1, [Score=71.6, Expect=3e-13]} {Celegans: WBGene00003072, lrp-2, Low-density lipoprotein RecePtor related, [Score=73.6, Expect=6e-14]} {Smed: dd_Smed_v6_6784_0_1, dd_Smed_v6_6784_0_1, [RH, Score=155, Expect=2e-43]} {RNA1509_31076} {RNA1310_16875.1} {RNA815_33006}

Berezikov Lab - 2020-2021 © ERIBA