TomoSeq data search

Data search

Results for MligTC455_22023

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_22023

338

7.03

Mlig455_046682

Neo: -

Age: -

BMI1

Mlig455_046682 {REF} {Length: 3035} {TRANSSPLICED} {Pfam: RAWUL domain RING finger- and WD40-associated ubiquitin-like [PF16207.7, score=40.3]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=35.7]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=32.9]; Ring finger domain [PF13639.8, score=24.3]; RING-type zinc-finger [PF13445.8, score=22.5]; zinc-RING finger domain [PF14634.8, score=21.8]; Autophagy protein Atg8 ubiquitin like [PF02991.18, score=19.0]} {Human: ENSG00000168283, BMI1, BMI1 proto-oncogene, polycomb ring finger, [RH, Score=226, Expect=5e-72]; ENSG00000269897, COMMD3-BMI1, COMMD3-BMI1 readthrough, [RH, Score=226, Expect=2e-70]} {Mouse: ENSMUSG00000026739, Bmi1, Bmi1 polycomb ring finger oncogene, [RH, Score=221, Expect=2e-70]} {Dmel: FBgn0005624, Psc, Posterior sex combs, [RH, Score=165, Expect=1e-45]} {Celegans: WBGene00008684, mig-32, [Score=91.3, Expect=2e-20]} {Smed: dd_Smed_v6_12753_0_1, dd_Smed_v6_12753_0_1, [RH, Score=168, Expect=1e-50]} {RNA1509_51655} {RNA1310_33482.1, RNA1509_51655} {RNA1509_51655, RNA815_18976}

Cumulative graph for MligTC455_22023

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.302	3.191	0.80516	1.00000
RegionR2	0.271	3.191	0.65639	0.98937
RegionR3	-0.343	3.191	0.52726	1.00000
RegionR4	0.018	3.191	0.97324	1.00000
RegionR5	1.037	3.191	0.01800	0.08962
RegionR6	0.919	3.191	0.06442	0.47610
RegionR7	-0.401	3.191	0.56955	1.00000
RegionR8	-1.199	3.191	0.22073	0.82839

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-6.873	3.191	0.11033	0.83455
RegenerationR2	-0.602	3.191	0.23380	0.68130
RegenerationR3	-0.263	3.191	0.66016	0.93332
RegenerationR4	-0.704	3.191	0.21391	0.66039
RegenerationR5	-0.727	3.191	0.14026	0.55281
RegenerationR6	-1.038	3.191	0.06768	0.32634
RegenerationBL	0.182	3.191	0.79479	1.00000
RegenerationTP	1.335	3.191	0.07292	0.43216

Genes with expression patterns similar to MligTC455_22023

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_22023	338	7.03	Mlig455_046682	Neo: - Age: -	BMI1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_046682 {REF} {Length: 3035} {TRANSSPLICED} {Pfam: RAWUL domain RING finger- and WD40-associated ubiquitin-like [PF16207.7, score=40.3]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=35.7]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=32.9]; Ring finger domain [PF13639.8, score=24.3]; RING-type zinc-finger [PF13445.8, score=22.5]; zinc-RING finger domain [PF14634.8, score=21.8]; Autophagy protein Atg8 ubiquitin like [PF02991.18, score=19.0]} {Human: ENSG00000168283, BMI1, BMI1 proto-oncogene, polycomb ring finger, [RH, Score=226, Expect=5e-72]; ENSG00000269897, COMMD3-BMI1, COMMD3-BMI1 readthrough, [RH, Score=226, Expect=2e-70]} {Mouse: ENSMUSG00000026739, Bmi1, Bmi1 polycomb ring finger oncogene, [RH, Score=221, Expect=2e-70]} {Dmel: FBgn0005624, Psc, Posterior sex combs, [RH, Score=165, Expect=1e-45]} {Celegans: WBGene00008684, mig-32, [Score=91.3, Expect=2e-20]} {Smed: dd_Smed_v6_12753_0_1, dd_Smed_v6_12753_0_1, [RH, Score=168, Expect=1e-50]} {RNA1509_51655} {RNA1310_33482.1, RNA1509_51655} {RNA1509_51655, RNA815_18976}
2.	MligTC455_23861	1192	24.82	Mlig455_039774	Neo: Int S/G2/M Age: -	MAPK14	1.683	-	-	0.712	-	-	0.971	Mlig455_039774 {REF} {Length: 3529} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=211.2]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=102.5]; ABC1 atypical kinase-like domain [PF03109.18, score=21.8]} {Human: ENSG00000112062, MAPK14, mitogen-activated protein kinase 14, [Score=367, Expect=4e-126]; ENSG00000185386, MAPK11, mitogen-activated protein kinase 11, [Score=353, Expect=2e-120]} {Mouse: ENSMUSG00000053436, Mapk14, mitogen-activated protein kinase 14, [Score=368, Expect=1e-126]; ENSMUSG00000053137, Mapk11, mitogen-activated protein kinase 11, [Score=350, Expect=2e-119]} {Dmel: FBgn0024846, p38b, p38b MAP kinase, [Score=347, Expect=2e-118]} {Celegans: WBGene00004055, pmk-1, Mitogen-activated protein kinase pmk-1, [Score=347, Expect=3e-118]} {Smed: dd_Smed_v6_1282_0_1, dd_Smed_v6_1282_0_1, [Score=365, Expect=9e-126]} {RNA1509_11385, RNA1509_25848, RNA1509_40425, RNA1509_41066, RNA1509_43505} {RNA1310_25209, RNA1509_11385, RNA1509_25848, RNA1509_40425, RNA1509_41066, RNA1509_43505} {RNA1509_11385, RNA1509_25848, RNA1509_40425, RNA1509_41066, RNA1509_43505, RNA815_10921}
3.	MligTC455_45105	609	12.68	Mlig455_042122	Neo: - Age: -	QRICH2	1.672	-	-	0.712	-	-	0.960	Mlig455_042122 {REF} {Length: 1526} {TRANSSPLICED} {Pfam: Spt5 C-terminal nonapeptide repeat binding Spt4 [PF12815.9, score=46.3]} {Human: ENSG00000129646, QRICH2, glutamine rich 2, [Score=59.7, Expect=9e-10]} {Mouse: ENSMUSG00000045350, Fam186a, family with sequence similarity 186, member A, [RH, Score=70.1, Expect=2e-13]} {RNA1310_22924.1} {RNA815_30357.2}
4.	MligTC455_37863	213	4.44	Mlig455_015363	Neo: - Age: Up-Down-Down	NBAS	0.987	-	-	-	-	-	0.987	Mlig455_015363 {REF} {Length: 8517} {TRANSSPLICED} {Pfam: Secretory pathway protein Sec39 [PF08314.13, score=51.4]; Neuroblastoma-amplified sequence, N terminal [PF15492.8, score=33.5]} {Human: ENSG00000151779, NBAS, neuroblastoma amplified sequence, [RH, Score=384, Expect=1e-106]} {Mouse: ENSMUSG00000020576, Nbas, neuroblastoma amplified sequence, [RH, Score=413, Expect=6e-116]} {Celegans: WBGene00008990, smgl-1, [RH, Score=55.5, Expect=5e-07]} {Smed: dd_Smed_v6_7998_0_1, dd_Smed_v6_7998_0_1, [RH, Score=206, Expect=1e-52]} {RNA1509_11685, RNA1509_55641} {RNA1310_353.1, RNA1509_11685, RNA1509_55641} {RNA1509_11685, RNA1509_55641, RNA815_138}
5.	MligTC455_49984	502	10.45	Mlig455_058735	Neo: - Age: -	DYNC1LI1	0.98	-	-	-	-	-	0.980	Mlig455_058735 {REF} {Length: 3066} {Pfam: Dynein light intermediate chain (DLIC) [PF05783.13, score=391.2]} {Human: ENSG00000144635, DYNC1LI1, dynein cytoplasmic 1 light intermediate chain 1, [RH, Score=300, Expect=3e-95]; ENSG00000135720, DYNC1LI2, dynein cytoplasmic 1 light intermediate chain 2, [RH, Score=289, Expect=4e-91]} {Mouse: ENSMUSG00000032435, Dync1li1, dynein cytoplasmic 1 light intermediate chain 1, [RH, Score=300, Expect=2e-95]; ENSMUSG00000035770, Dync1li2, dynein, cytoplasmic 1 light intermediate chain 2, [RH, Score=298, Expect=5e-95]} {Dmel: FBgn0030276, Dlic, Dynein light intermediate chain, [RH, Score=296, Expect=4e-94]} {Celegans: WBGene00001007, dli-1, Dynein Light Intermediate chain, [RH, Score=139, Expect=1e-35]} {Smed: dd_Smed_v6_8444_0_1, dd_Smed_v6_8444_0_1, [RH, Score=315, Expect=3e-98]} {RNA1509_6530} {RNA1310_2016} {RNA815_15385.1}
6.	MligTC455_15961	171	3.56	Mlig455_015893	Neo: - Age: Down-Up-Down Region-enriched R5: 1.769/0.02130	MIB2	0.97	-	-	-	-	0.970	-	Mlig455_015893 {REF} {Length: 4254} {TRANSSPLICED} {Pfam: Mib_herc2 [PF06701.15, score=160.8]; Ankyrin repeats (3 copies) [PF12796.9, score=127.5]; Ankyrin repeats (many copies) [PF13637.8, score=123.4]; Ankyrin repeats (many copies) [PF13857.8, score=111.7]; Ankyrin repeat [PF00023.32, score=103.1]; Ankyrin repeat [PF13606.8, score=86.5]; Mind bomb SH3 repeat domain [PF18346.3, score=81.4]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=60.4]; Zinc finger, ZZ type [PF00569.19, score=22.2]} {Human: ENSG00000197530, MIB2, mindbomb E3 ubiquitin protein ligase 2, [RH, Score=563, Expect=0.0]} {Mouse: ENSMUSG00000029060, Mib2, mindbomb E3 ubiquitin protein ligase 2, [RH, Score=493, Expect=1e-158]} {Dmel: FBgn0086442, mib2, mind bomb 2, [RH, Score=553, Expect=3e-180]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=125, Expect=2e-28]} {Smed: dd_Smed_v6_6104_0_4, dd_Smed_v6_6104_0_4, [Score=278, Expect=9e-78]} {RNA1509_12439} {RNA1310_3959.1} {RNA815_13244}
7.	MligTC455_45096	1181	24.61	Mlig455_017243	Neo: - Age: -	EPRS	0.967	-	-	-	-	-	0.967	Mlig455_017243 {REF} {Length: 3795} {TRANSSPLICED} {Pfam: tRNA synthetases class I (E and Q), catalytic domain [PF00749.23, score=366.1]; WHEP-TRS domain [PF00458.22, score=276.6]; tRNA synthetases class I (E and Q), anti-codon binding domain [PF03950.20, score=117.6]} {Human: ENSG00000136628, EPRS, glutamyl-prolyl-tRNA synthetase, [RH, Score=918, Expect=0.0]} {Mouse: ENSMUSG00000026615, Eprs, glutamyl-prolyl-tRNA synthetase, [RH, Score=939, Expect=0.0]} {Dmel: FBgn0005674, GluProRS, Glutamyl-prolyl-tRNA synthetase, [RH, Score=899, Expect=0.0]} {Celegans: WBGene00001337, ears-1, Glutamyl(E) Amino-acyl tRNA Synthetase, [RH, Score=820, Expect=0.0]} {Smed: dd_Smed_v6_2488_0_1, dd_Smed_v6_2488_0_1, [RH, Score=702, Expect=0.0]} {RNA1509_3828} {RNA1310_4280.1} {RNA815_2168.1}
8.	MligTC455_22480	130	2.7	Mlig455_062188	Neo: - Age: -		0.966	-	-	-	0.966	-	-	Mlig455_062188 {REF} {Length: 622} {NoTransDecoderORF} {RNA1509_40555} {RNA1310_89577}
9.	MligTC455_32060	605	12.61	Mlig455_024932, Mlig455_024967	Neo: Int S/G2/M Age: Up-Down-Down	PHF8	0.961	-	-	-	-	-	0.961	Mlig455_024932 {REF} {Length: 7343} {TRANSSPLICED} {Pfam: Jumonji helical domain [PF17811.3, score=44.6]; Cupin-like domain [PF13621.8, score=26.8]; JmjC domain, hydroxylase [PF02373.24, score=26.0]} {Human: ENSG00000172943, PHF8, PHD finger protein 8, [Score=261, Expect=2e-74]; ENSG00000006459, KDM7A, lysine demethylase 7A, [Score=252, Expect=9e-72]} {Mouse: ENSMUSG00000041229, Phf8, PHD finger protein 8, [Score=257, Expect=2e-74]; ENSMUSG00000042599, Kdm7a, lysine (K)-specific demethylase 7A, [Score=248, Expect=1e-70]; ENSMUSG00000023350, 4921501E09Rik, RIKEN cDNA 4921501E09 gene, [Score=247, Expect=2e-70]} {Dmel: FBgn0037659, Kdm2, Lysine (K)-specific demethylase 2, [Score=207, Expect=6e-56]} {Celegans: WBGene00017920, jmjd-1.2, Lysine-specific demethylase 7 homolog, [Score=214, Expect=4e-59]} {Smed: dd_Smed_v6_10417_0_1, dd_Smed_v6_10417_0_1, [Score=245, Expect=4e-74]} {RNA1509_16502} {RNA1310_8820.1} {RNA815_3231} Mlig455_024967 {REF} {Length: 9049} {TRANSSPLICED} {Pfam: Jumonji helical domain [PF17811.3, score=43.6]; JmjC domain, hydroxylase [PF02373.24, score=24.8]; Cupin-like domain [PF13621.8, score=24.8]} {Human: ENSG00000172943, PHF8, PHD finger protein 8, [Score=242, Expect=1e-65]; ENSG00000006459, KDM7A, lysine demethylase 7A, [Score=237, Expect=2e-64]} {Mouse: ENSMUSG00000041229, Phf8, PHD finger protein 8, [Score=242, Expect=1e-68]; ENSMUSG00000042599, Kdm7a, lysine (K)-specific demethylase 7A, [Score=231, Expect=2e-62]} {Dmel: FBgn0037659, Kdm2, Lysine (K)-specific demethylase 2, [Score=206, Expect=4e-54]} {Celegans: WBGene00017920, jmjd-1.2, Lysine-specific demethylase 7 homolog, [Score=212, Expect=2e-56]} {Smed: dd_Smed_v6_10417_0_1, dd_Smed_v6_10417_0_1, [Score=246, Expect=3e-72]} {RNA1509_16502, RNA1509_59934} {RNA1310_8820.1, RNA1509_59934} {RNA1509_59934, RNA815_3231}
10.	MligTC455_46128	405	8.45	Mlig455_009070	Neo: Int S/G2/M Age: Down-Up-Down, logFC(26M/2M)=2.749		0.961	-	-	-	-	-	0.961	Mlig455_009070 {REF} {Length: 2786} {RNA1509_26637, RNA1509_34188} {RNA1310_30874, RNA1509_26637} {RNA1509_26637, RNA815_17123}
11.	MligTC455_25460	203	4.23	Mlig455_017949	Neo: Irradiation Age: -	UTP25	0.96	-	-	-	-	0.960	-	Mlig455_017949 {REF} {Length: 2589} {TRANSSPLICED} {Pfam: Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 [PF06862.14, score=383.4]; DEAD/DEAH box helicase [PF00270.31, score=19.0]} {Human: ENSG00000117597, UTP25, UTP25, small subunit processor component, [RH, Score=293, Expect=4e-89]} {Mouse: ENSMUSG00000016181, Diexf, digestive organ expansion factor homolog (zebrafish), [RH, Score=286, Expect=2e-86]} {Dmel: FBgn0034933, CG3735, [RH, Score=253, Expect=1e-74]} {Celegans: WBGene00012756, Y41C4A.9, [RH, Score=191, Expect=4e-53]} {Smed: dd_Smed_v6_9470_0_1, dd_Smed_v6_9470_0_1, [RH, Score=153, Expect=1e-39]} {RNA1509_25312} {RNA1310_17305.1, RNA1509_25312} {RNA1509_25312, RNA815_9754}
12.	MligTC455_49323	1498	31.2	Mlig455_064751	Neo: - Age: Up-Up-Up, logFC(26M/2M)=0.645	SSR2	0.957	-	-	-	0.957	-	-	Mlig455_064751 {REF} {Length: 1136} {TRANSSPLICED} {Pfam: Translocon-associated protein beta (TRAPB) [PF05753.16, score=179.1]} {Human: ENSG00000163479, SSR2, signal sequence receptor subunit 2, [RH, Score=159, Expect=4e-49]} {Mouse: ENSMUSG00000041355, Ssr2, signal sequence receptor, beta, [RH, Score=154, Expect=1e-47]} {Dmel: FBgn0011016, SsRbeta, Signal sequence receptor beta, [RH, Score=120, Expect=3e-34]} {Celegans: WBGene00020216, trap-2, Translocon-associated protein subunit beta, [RH, Score=102, Expect=1e-27]} {Smed: dd_Smed_v6_1759_0_1, dd_Smed_v6_1759_0_1, [RH, Score=162, Expect=4e-51]} {RNA1509_15018, RNA1509_25362, RNA1509_8746} {RNA1310_30120.1, RNA1509_15018, RNA1509_25362, RNA1509_8746} {RNA1509_15018, RNA1509_25362, RNA1509_8746, RNA815_12830.1}
13.	MligTC455_12155	514	10.71	Mlig455_050403	Neo: Germline Age: - Region-enriched R5: 1.922/0.01975	DIS3L2	0.955	-	-	-	-	-	0.955	Mlig455_050403 {REF} {Length: 3948} {TRANSSPLICED} {Pfam: RNB domain [PF00773.21, score=286.6]; Dis3-like cold-shock domain 2 (CSD2) [PF17849.3, score=53.1]; DIS3-like exonuclease 2 C terminal [PF17877.3, score=37.3]; Rrp44-like cold shock domain [PF17216.5, score=28.7]} {Human: ENSG00000144535, DIS3L2, DIS3 like 3'-5' exoribonuclease 2, [RH, Score=490, Expect=3e-157]} {Mouse: ENSMUSG00000053333, Dis3l2, DIS3 like 3'-5' exoribonuclease 2, [RH, Score=494, Expect=3e-159]} {Dmel: FBgn0035111, Dis3l2, Dis3 like 3'-5' exoribonuclease 2, [RH, Score=301, Expect=5e-86]} {Celegans: WBGene00018612, disl-2, DIS3-like exonuclease 2, [RH, Score=440, Expect=4e-139]} {Smed: dd_Smed_v6_7044_0_1, dd_Smed_v6_7044_0_1, [RH, Score=487, Expect=4e-157]} {RNA1509_30644} {RNA1310_2522.1, RNA1509_30644} {RNA1509_30644, RNA815_1747}
14.	MligTC455_21092	581	12.11	Mlig455_014955	Neo: - Age: -	LRP3	0.954	-	-	-	-	-	0.954	Mlig455_014955 {REF} {Length: 2087} {TRANSSPLICED} {Pfam: Low-density lipoprotein receptor domain class A [PF00057.20, score=53.2]} {Human: ENSG00000130881, LRP3, LDL receptor related protein 3, [Score=115, Expect=1e-27]} {Mouse: ENSMUSG00000001802, Lrp3, low density lipoprotein receptor-related protein 3, [RH, Score=114, Expect=1e-27]} {Dmel: FBgn0053087, LRP1, LDL receptor protein 1, [Score=71.6, Expect=3e-13]} {Celegans: WBGene00003072, lrp-2, Low-density lipoprotein RecePtor related, [Score=73.6, Expect=6e-14]} {Smed: dd_Smed_v6_6784_0_1, dd_Smed_v6_6784_0_1, [RH, Score=155, Expect=2e-43]} {RNA1509_31076} {RNA1310_16875.1} {RNA815_33006}
15.	MligTC455_22965	433	9.03	Mlig455_019042	Neo: - Age: Down-Down-Up		0.954	-	-	-	0.954	-	-	Mlig455_019042 {REF} {Length: 1514} {Pfam: Sleepless protein [PF17064.7, score=26.9]} {Smed: dd_Smed_v6_3898_0_1, dd_Smed_v6_3898_0_1, [RH, Score=69.3, Expect=1e-15]} {RNA1509_27313, RNA1509_54222} {RNA1310_27569.1, RNA1509_54222} {RNA1509_54222, RNA815_11340}
16.	MligTC455_32247	605	12.61	Mlig455_041131	Neo: - Age: - Region-enriched R4: 1.157/0.02803	FAM102A	0.953	-	-	-	-	-	0.953	Mlig455_041131 {REF} {Length: 2747} {TRANSSPLICED} {Pfam: N-terminal C2 in EEIG1 and EHBP1 proteins [PF10358.11, score=28.7]} {Human: ENSG00000167106, FAM102A, family with sequence similarity 102 member A, [Score=99.0, Expect=8e-23]; ENSG00000162636, FAM102B, family with sequence similarity 102 member B, [Score=94.4, Expect=3e-21]} {Mouse: ENSMUSG00000039157, Fam102a, family with sequence similarity 102, member A, [Score=96.7, Expect=4e-22]; ENSMUSG00000040339, Fam102b, family with sequence similarity 102, member B, [Score=94.0, Expect=3e-21]} {Dmel: FBgn0032938, CG8671, [Score=109, Expect=2e-26]} {Celegans: WBGene00006368, sym-3, SYM-3B, [Score=79.7, Expect=7e-18]} {Smed: dd_Smed_v6_5362_0_1, dd_Smed_v6_5362_0_1, [Score=80.1, Expect=1e-16]} {RNA1509_17223} {RNA1310_22582, RNA1509_17223} {RNA1509_17223, RNA815_9432}
17.	MligTC455_33717	54	1.13	Mlig455_033324	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.739		0.951	-	-	-	-	0.951	-	Mlig455_033324 {REF} {Length: 1158} {Smed: dd_Smed_v6_40744_0_1, dd_Smed_v6_40744_0_1, [Score=44.3, Expect=1e-05]} {RNA1509_48973} {RNA1310_39833} {RNA815_36286}

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