M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_51345

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_51345 1637 34.11 Mlig455_062128

Neo: -

Age: Down-Up-Down

 PRDX5 Mlig455_062128 {REF} {Length: 2414} {TRANSSPLICED} {Pfam: Redoxin [PF08534.12, score=108.5]; AhpC/TSA family [PF00578.23, score=44.1]} {Human: ENSG00000126432, PRDX5, peroxiredoxin 5, [Score=132, Expect=8e-39]} {Mouse: ENSMUSG00000024953, Prdx5, peroxiredoxin 5, [Score=123, Expect=2e-35]} {Dmel: FBgn0038570, Prx5, Peroxiredoxin 5, [Score=139, Expect=4e-42]} {Smed: dd_Smed_v6_1290_0_1, dd_Smed_v6_1290_0_1, [Score=157, Expect=2e-49]} {RNA1509_12993, RNA1509_12998, RNA1509_15064, RNA1509_15980, RNA1509_20667, RNA1509_4959} {RNA1310_37609, RNA1509_12993, RNA1509_12998, RNA1509_15064, RNA1509_15980, RNA1509_20667, RNA1509_4959} {RNA1509_12993, RNA1509_12998, RNA1509_15064, RNA1509_15980, RNA1509_20667, RNA1509_4959, RNA815_25605}

Cumulative graph for MligTC455_51345

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.798 5.304 0.16036 0.78078
RegionR2 -0.023 5.304 0.93605 1.00000
RegionR3 -0.052 5.304 0.81253 1.00000
RegionR4 0.334 5.304 0.20602 0.48827
RegionR5 0.154 5.304 0.42241 0.78237
RegionR6 -0.419 5.304 0.07049 0.49436
RegionR7 -0.57 5.304 0.07749 0.53702
RegionR8 -0.222 5.304 0.55848 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.058 5.304 0.94255 1.00000
RegenerationR2 -0.544 5.304 0.03420 0.30501
RegenerationR3 0.097 5.304 0.71623 0.95400
RegenerationR4 -0.465 5.304 0.08017 0.44892
RegenerationR5 -0.108 5.304 0.65224 0.93312
RegenerationR6 0.512 5.304 0.06331 0.31591
RegenerationBL 0.487 5.304 0.16083 0.48096
RegenerationTP 0.544 5.304 0.13131 0.54489


Genes with expression patterns similar to MligTC455_51345

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_51345 1637 34.11 Mlig455_062128

Neo: -

Age: Down-Up-Down

 PRDX5 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_062128 {REF} {Length: 2414} {TRANSSPLICED} {Pfam: Redoxin [PF08534.12, score=108.5]; AhpC/TSA family [PF00578.23, score=44.1]} {Human: ENSG00000126432, PRDX5, peroxiredoxin 5, [Score=132, Expect=8e-39]} {Mouse: ENSMUSG00000024953, Prdx5, peroxiredoxin 5, [Score=123, Expect=2e-35]} {Dmel: FBgn0038570, Prx5, Peroxiredoxin 5, [Score=139, Expect=4e-42]} {Smed: dd_Smed_v6_1290_0_1, dd_Smed_v6_1290_0_1, [Score=157, Expect=2e-49]} {RNA1509_12993, RNA1509_12998, RNA1509_15064, RNA1509_15980, RNA1509_20667, RNA1509_4959} {RNA1310_37609, RNA1509_12993, RNA1509_12998, RNA1509_15064, RNA1509_15980, RNA1509_20667, RNA1509_4959} {RNA1509_12993, RNA1509_12998, RNA1509_15064, RNA1509_15980, RNA1509_20667, RNA1509_4959, RNA815_25605}
2. MligTC455_46938 1850 38.54 Mlig455_008582

Neo: -

Age: -

 TMEM45B 1.793 - - - 0.842 - 0.951 Mlig455_008582 {REF} {Length: 3037} {TRANSSPLICED} {Pfam: Family of unknown function (DUF716) [PF04819.14, score=94.1]} {Human: ENSG00000151715, TMEM45B, transmembrane protein 45B, [RH, Score=122, Expect=4e-32]} {Mouse: ENSMUSG00000041737, Tmem45b, transmembrane protein 45b, [RH, Score=123, Expect=8e-33]} {Smed: dd_Smed_v6_1542_0_1, dd_Smed_v6_1542_0_1, [RH, Score=133, Expect=8e-37]} {RNA1509_5243} {RNA1310_25344} {RNA815_10825}
3. MligTC455_39076 720 14.99 Mlig455_042689

Neo: -

Age: Up-Up-Down

 KIF2A 1.779 - - - 0.960 - 0.819 Mlig455_042689 {REF} {Length: 5010} {TRANSSPLICED} {Pfam: Kinesin motor domain [PF00225.25, score=306.0]; Microtubule binding [PF16796.7, score=49.7]} {Human: ENSG00000068796, KIF2A, kinesin family member 2A, [RH, Score=712, Expect=0.0]} {Mouse: ENSMUSG00000021693, Kif2a, kinesin family member 2A, [RH, Score=657, Expect=0.0]} {Dmel: FBgn0030268, Klp10A, Kinesin-like protein at 10A, [RH, Score=581, Expect=0.0]} {Celegans: WBGene00002219, klp-7, Kinesin-like protein, [RH, Score=488, Expect=5e-162]} {Smed: dd_Smed_v6_3087_0_1, dd_Smed_v6_3087_0_1, [RH, Score=806, Expect=0.0]} {RNA1509_20918} {RNA1310_7277} {RNA815_5104}
4. MligTC455_36709 3794 79.04 Mlig455_059511

Neo: -

Age: Down-Up-Up

Region-enriched R4: 1.064/0.00002

 TXN2 1.681 - - - 0.954 - 0.727 Mlig455_059511 {REF} {Length: 986} {TRANSSPLICED} {Pfam: Thioredoxin [PF00085.22, score=66.7]} {Human: ENSG00000100348, TXN2, thioredoxin 2, [RH, Score=102, Expect=4e-27]} {Mouse: ENSMUSG00000005354, Txn2, thioredoxin 2, [RH, Score=100, Expect=4e-27]} {Dmel: FBgn0035334, CG8993, [RH, Score=81.3, Expect=2e-19]} {Celegans: WBGene00007099, trx-2, Probable thioredoxin-2, [Score=79.7, Expect=4e-19]} {Smed: dd_Smed_v6_872_0_1, dd_Smed_v6_872_0_1, [RH, Score=89.7, Expect=3e-23]} {RNA1509_7447, RNA1509_8127} {RNA1310_36313.1, RNA1509_7447} {RNA1509_7447, RNA815_10101.2}
5. MligTC455_40946 312 6.5 Mlig455_067804

Neo: -

Age: Up-Down-Up

 LCMT2 0.972 - - - - 0.972 - Mlig455_067804 {REF} {Length: 3120} {TRANSSPLICED} {Pfam: Leucine carboxyl methyltransferase [PF04072.16, score=83.5]} {Human: ENSG00000168806, LCMT2, leucine carboxyl methyltransferase 2, [RH, Score=228, Expect=6e-64]} {Mouse: ENSMUSG00000074890, Lcmt2, leucine carboxyl methyltransferase 2, [RH, Score=239, Expect=4e-68]} {Dmel: FBgn0028507, CG3793, [Score=175, Expect=2e-48]} {Celegans: WBGene00007137, B0285.4, Probable leucine carboxyl methyltransferase 1, [Score=134, Expect=2e-34]} {Smed: dd_Smed_v6_3702_0_1, dd_Smed_v6_3702_0_1, [RH, Score=286, Expect=5e-85]} {RNA1509_29463} {RNA1310_7945.1, RNA1509_29463} {RNA1509_29463, RNA815_13873.1}
6. MligTC455_15630 1192 24.82 Mlig455_004654, Mlig455_004721

Neo: Neoblast, stringent

Age: logFC(26M/2M)=0.356

Region-specific R5: 2.326

Region-enriched R5: 1.845/0.00000

Regeneration-upregulated R3: 1.528

Regeneration-enriched R3: 1.528

 MCM2 0.967 - - - 0.967 - -

Mlig455_004654 {REF} {Length: 3591} {TRANSSPLICED} {Pfam: MCM P-loop domain [PF00493.25, score=330.2]; MCM OB domain [PF17207.5, score=130.7]; MCM AAA-lid domain [PF17855.3, score=109.4]; Mini-chromosome maintenance protein 2 [PF12619.10, score=55.8]; MCM N-terminal domain [PF14551.8, score=50.1]; Magnesium chelatase, subunit ChlI [PF01078.23, score=34.7]; AAA domain (dynein-related subfamily) [PF07728.16, score=18.6]} {Human: ENSG00000073111, MCM2, minichromosome maintenance complex component 2, [RH, Score=1056, Expect=0.0]} {Mouse: ENSMUSG00000002870, Mcm2, minichromosome maintenance complex component 2, [RH, Score=1046, Expect=0.0]} {Dmel: FBgn0014861, Mcm2, Minichromosome maintenance 2, [RH, Score=991, Expect=0.0]} {Celegans: WBGene00003154, mcm-2, Yeast MCM (Licensing factor) related, [RH, Score=895, Expect=0.0]} {Smed: dd_Smed_v6_7682_0_1, dd_Smed_v6_7682_0_1, [RH, Score=915, Expect=0.0]} {RNA1509_20695, RNA1509_23887, RNA1509_3101} {RNA1310_746.1, RNA1509_20695, RNA1509_23887, RNA1509_3101} {RNA1509_20695, RNA1509_23887, RNA1509_3101, RNA815_2497}

Mlig455_004721 {REF} {Length: 3590} {TRANSSPLICED} {Pfam: MCM P-loop domain [PF00493.25, score=330.2]; MCM OB domain [PF17207.5, score=130.7]; MCM AAA-lid domain [PF17855.3, score=109.4]; Mini-chromosome maintenance protein 2 [PF12619.10, score=55.8]; MCM N-terminal domain [PF14551.8, score=50.1]; Magnesium chelatase, subunit ChlI [PF01078.23, score=34.7]; AAA domain (dynein-related subfamily) [PF07728.16, score=18.6]} {Human: ENSG00000073111, MCM2, minichromosome maintenance complex component 2, [RH, Score=1056, Expect=0.0]} {Mouse: ENSMUSG00000002870, Mcm2, minichromosome maintenance complex component 2, [RH, Score=1046, Expect=0.0]} {Dmel: FBgn0014861, Mcm2, Minichromosome maintenance 2, [RH, Score=991, Expect=0.0]} {Celegans: WBGene00003154, mcm-2, Yeast MCM (Licensing factor) related, [RH, Score=895, Expect=0.0]} {Smed: dd_Smed_v6_7682_0_1, dd_Smed_v6_7682_0_1, [RH, Score=915, Expect=0.0]} {RNA1509_20695} {RNA1310_746.1} {RNA815_2497}
7. MligTC455_39702 1293 26.94 Mlig455_010974

Neo: -

Age: -

 TMEM143 0.96 - - - 0.960 - - Mlig455_010974 {REF} {Length: 2549} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF3754) [PF12576.10, score=33.3]} {Human: ENSG00000161558, TMEM143, transmembrane protein 143, [RH, Score=119, Expect=2e-28]} {Mouse: ENSMUSG00000002781, Tmem143, transmembrane protein 143, [RH, Score=108, Expect=6e-25]} {Smed: dd_Smed_v6_3158_0_1, dd_Smed_v6_3158_0_1, [RH, Score=134, Expect=3e-34]} {RNA1509_26092, RNA1509_59521, RNA1509_9391} {RNA1310_8676.1, RNA1509_26092, RNA1509_59521} {RNA1509_26092, RNA1509_59521, RNA815_6851}
8. MligTC455_17641 1996 41.57 Mlig455_003375

Neo: -

Age: Down-Up-Down

 0.952 - - - - - 0.952 Mlig455_003375 {REF} {Length: 530} {TRANSSPLICED} {RNA1509_17017, RNA1509_25779, RNA1509_27040, RNA1509_28317, RNA1509_28868, RNA1509_8171} {RNA1310_49833.1, RNA1509_17017, RNA1509_25779, RNA1509_27040, RNA1509_28317, RNA1509_28868, RNA1509_8171} {RNA1509_17017, RNA1509_25779, RNA1509_27040, RNA1509_28317, RNA1509_28868, RNA1509_8171, RNA815_34949}
9. MligTC455_49069 3685 76.77 Mlig455_070251

Neo: -

Age: logFC(26M/2M)=0.212

Region-enriched R4: 1.746/0.00071

 CS 0.952 - - - 0.952 - - Mlig455_070251 {REF} {Length: 2221} {TRANSSPLICED} {Pfam: Citrate synthase, C-terminal domain [PF00285.23, score=347.7]} {Human: ENSG00000062485, CS, citrate synthase, [RH, Score=701, Expect=0.0]} {Mouse: ENSMUSG00000005683, Cs, citrate synthase, [RH, Score=699, Expect=0.0]; ENSMUSG00000046934, Csl, citrate synthase like, [RH, Score=687, Expect=0.0]} {Dmel: FBgn0261955, kdn, knockdown, [RH, Score=694, Expect=0.0]} {Celegans: WBGene00000833, cts-1, Probable citrate synthase, mitochondrial, [RH, Score=641, Expect=0.0]} {Smed: dd_Smed_v6_335_0_1, dd_Smed_v6_335_0_1, [RH, Score=706, Expect=0.0]} {RNA1509_762} {RNA1310_11494.1} {RNA815_3764.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA