TomoSeq data search

Data search

Results for MligTC455_51513

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_51513

348

7.25

Mlig455_038556, Mlig455_053451

Neo: -

Age: -

Region-enriched R5: 2.235/0.02381

Mlig455_038556 {REF} {Length: 2714} {TRANSSPLICED} {RNA1509_37154} {RNA1310_37300, RNA1509_37154} {RNA1509_37154, RNA815_23625}

Mlig455_053451 {REF} {Length: 3007} {TRANSSPLICED} {RNA1509_37154} {RNA1310_37300} {RNA815_23625}

Cumulative graph for MligTC455_51513

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-6.186	3.415	1.00000	1.00000
RegionR2	2.006	3.415	0.03661	0.22104
RegionR3	2.212	3.415	0.00593	0.10693
RegionR4	2.292	3.415	0.00936	0.05808
RegionR5	2.235	3.415	0.00303	0.02381
RegionR6	1.879	3.415	0.03484	0.34713
RegionR7	2.034	3.415	0.03199	0.33982
RegionR8	-6.472	3.415	0.99989	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.138	3.415	0.99996	1.00000
RegenerationR2	-0.066	3.415	0.87908	1.00000
RegenerationR3	-0.679	3.415	0.17613	0.61186
RegenerationR4	-0.468	3.415	0.38390	0.80371
RegenerationR5	0.285	3.415	0.51857	0.86868
RegenerationR6	-0.526	3.415	0.33441	0.68049
RegenerationBL	1.107	3.415	0.43925	0.80640
RegenerationTP	3.041	3.415	0.06278	0.40550

Genes with expression patterns similar to MligTC455_51513

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_51513	348	7.25	Mlig455_038556, Mlig455_053451	Neo: - Age: - Region-enriched R5: 2.235/0.02381		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_038556 {REF} {Length: 2714} {TRANSSPLICED} {RNA1509_37154} {RNA1310_37300, RNA1509_37154} {RNA1509_37154, RNA815_23625} Mlig455_053451 {REF} {Length: 3007} {TRANSSPLICED} {RNA1509_37154} {RNA1310_37300} {RNA815_23625}
2.	MligTC455_30116	31	0.64	Mlig455_036790, Mlig455_036796	Neo: - Age: -		0.965	-	-	-	-	0.965	-	Mlig455_036790 {REF} {Length: 276} {NoTransDecoderORF} {RNA1509_14197} {RNA1310_72465} {RNA815_3035.2} Mlig455_036796 {REF} {Length: 276} {NoTransDecoderORF} {RNA1509_14197} {RNA1310_72465} {RNA815_3035.2}
3.	MligTC455_18722	24	0.5	Mlig455_018294	Neo: Int S/G2/M Age: Up-Down-Down	PLK2	0.962	-	-	-	-	0.962	-	Mlig455_018294 {REF} {Length: 3188} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=53.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=23.3]} {Human: ENSG00000145632, PLK2, polo like kinase 2, [Score=75.1, Expect=3e-15]; ENSG00000166851, PLK1, polo like kinase 1, [Score=73.2, Expect=1e-14]} {Mouse: ENSMUSG00000030867, Plk1, polo like kinase 1, [Score=77.0, Expect=4e-16]; ENSMUSG00000021701, Plk2, polo like kinase 2, [Score=74.7, Expect=3e-15]} {Dmel: FBgn0003124, polo, [Score=65.1, Expect=3e-12]} {Celegans: WBGene00004042, plk-1, Serine/threonine-protein kinase plk-1, [Score=62.8, Expect=2e-11]} {Smed: dd_Smed_v6_3838_0_1, dd_Smed_v6_3838_0_1, [Score=60.5, Expect=6e-11]} {RNA1509_35335} {RNA1310_29286} {RNA815_15815}
4.	MligTC455_22408	69	1.43	Mlig455_020360	Neo: Int S/G2/M Age: Down-Up-Down	MAN1B1	0.957	-	-	-	-	0.957	-	Mlig455_020360 {REF} {Length: 3567} {TRANSSPLICED} {Pfam: Glycosyl hydrolase family 47 [PF01532.22, score=516.9]} {Human: ENSG00000177239, MAN1B1, mannosidase alpha class 1B member 1, [RH, Score=509, Expect=2e-173]} {Mouse: ENSMUSG00000036646, Man1b1, mannosidase, alpha, class 1B, member 1, [RH, Score=522, Expect=3e-179]} {Dmel: FBgn0039634, alpha-Man-Ib, alpha-Mannosidase class I b, [RH, Score=479, Expect=2e-162]} {Celegans: WBGene00020197, mans-3, alpha-1,2-Mannosidase, [RH, Score=454, Expect=3e-154]} {Smed: dd_Smed_v6_7032_0_1, dd_Smed_v6_7032_0_1, [RH, Score=514, Expect=3e-178]} {RNA1509_10584} {RNA1310_11173, RNA1509_10584} {RNA1509_10584, RNA815_9464}
5.	MligTC455_33721	238	4.96	Mlig455_023625	Neo: - Age: -	INPP4A	0.957	-	-	-	-	0.957	-	Mlig455_023625 {REF} {Length: 3731} {TRANSSPLICED} {Pfam: PH domain [PF00169.31, score=23.2]} {Human: ENSG00000040933, INPP4A, inositol polyphosphate-4-phosphatase type I A, [RH, Score=160, Expect=9e-40]; ENSG00000109452, INPP4B, inositol polyphosphate-4-phosphatase type II B, [RH, Score=154, Expect=7e-38]} {Mouse: ENSMUSG00000026113, Inpp4a, inositol polyphosphate-4-phosphatase, type I, [RH, Score=160, Expect=6e-40]; ENSMUSG00000037940, Inpp4b, inositol polyphosphate-4-phosphatase, type II, [RH, Score=154, Expect=8e-38]} {Dmel: FBgn0259166, CG42271, [RH, Score=130, Expect=2e-30]} {Celegans: WBGene00010975, R01H10.7, Inositol polyphosphate-4-phosphatase, [RH, Score=99.4, Expect=6e-21]} {Smed: dd_Smed_v6_3999_0_1, dd_Smed_v6_3999_0_1, [RH, Score=273, Expect=1e-77]} {RNA1509_35733} {RNA1310_133.2} {RNA815_856}
6.	MligTC455_08916	9	0.2	Mlig455_009151	Neo: - Age: -		0.956	-	-	-	-	0.956	-	Mlig455_009151 {REF} {Length: 510} {NoTransDecoderORF} {RNA1310_49412} {RNA815_40095}
7.	MligTC455_25314	18	0.39	Mlig455_004144, Mlig455_019456	Neo: - Age: Down-Down-Up Region-enriched R4: 5.385/0.00156	MYRF	0.955	-	-	-	-	0.955	-	Mlig455_004144 {REF} {Length: 3239} {Pfam: NDT80 / PhoG like DNA-binding family [PF05224.14, score=61.0]; Myelin regulatory factor ICA domain [PF13887.8, score=56.4]; Chaperone of endosialidase [PF13884.8, score=26.5]} {Human: ENSG00000124920, MYRF, myelin regulatory factor, [Score=243, Expect=3e-66]} {Mouse: ENSMUSG00000036098, Myrf, myelin regulatory factor, [Score=238, Expect=1e-64]} {Dmel: FBgn0034985, CG3328, [Score=234, Expect=2e-63]} {Celegans: WBGene00004134, myrf-1, Myelin regulatory factor related, [RH, Score=164, Expect=3e-41]} {RNA1509_8962} {RNA1310_4590.2, RNA1509_8962} {RNA1509_8962, RNA815_1404} Mlig455_019456 {REF} {Length: 3217} {Pfam: NDT80 / PhoG like DNA-binding family [PF05224.14, score=61.0]; Myelin regulatory factor ICA domain [PF13887.8, score=56.4]; Chaperone of endosialidase [PF13884.8, score=26.5]} {Human: ENSG00000124920, MYRF, myelin regulatory factor, [Score=243, Expect=3e-66]} {Mouse: ENSMUSG00000036098, Myrf, myelin regulatory factor, [Score=238, Expect=1e-64]} {Dmel: FBgn0034985, CG3328, [Score=234, Expect=2e-63]} {Celegans: WBGene00004134, myrf-1, Myelin regulatory factor related, [RH, Score=164, Expect=2e-41]} {RNA1509_8962} {RNA1310_4590.2} {RNA815_1404}
8.	MligTC455_43644	59	1.24	Mlig455_001464	Neo: Int S/G2/M Age: -	PMS2	0.955	-	-	-	-	0.955	-	Mlig455_001464 {REF} {Length: 5111} {Pfam: DNA mismatch repair protein, C-terminal domain [PF01119.21, score=72.1]; MutL C terminal dimerisation domain [PF08676.13, score=63.6]; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [PF13589.8, score=39.7]; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [PF02518.28, score=21.4]} {Human: ENSG00000122512, PMS2, PMS1 homolog 2, mismatch repair system component, [RH, Score=312, Expect=1e-92]} {Mouse: ENSMUSG00000079109, Pms2, PMS1 homolog2, mismatch repair system component, [RH, Score=314, Expect=1e-93]} {Dmel: FBgn0011660, Pms2, [RH, Score=269, Expect=4e-77]} {Celegans: WBGene00004064, pms-2, PMS (Post Meiotic Segregation) family, [RH, Score=245, Expect=2e-69]} {Smed: dd_Smed_v6_16760_0_2, dd_Smed_v6_16760_0_2, [RH, Score=260, Expect=2e-76]} {RNA1509_20911} {RNA1310_4642, RNA1509_20911} {RNA1509_20911, RNA815_7455}
9.	MligTC455_03341	78	1.62	Mlig455_065359	Neo: - Age: Up-Down-Up		0.953	-	-	-	-	0.953	-	Mlig455_065359 {REF} {Length: 2340} {TRANSSPLICED} {RNA1509_28552} {RNA1310_15555} {RNA815_4371}
10.	MligTC455_26289	103	2.15	Mlig455_031915	Neo: - Age: Up-Down-Down Region-enriched R2: 3.261/0.04331		0.953	-	-	-	-	0.953	-	Mlig455_031915 {REF} {Length: 3995} {Pfam: Elongation factor G C-terminus [PF00679.26, score=37.7]} {RNA1509_50100} {RNA1310_17404.1} {RNA815_5685.2}
11.	MligTC455_14596	9	0.19	Mlig455_063884	Neo: - Age: -		0.951	-	-	-	-	0.951	-	Mlig455_063884 {REF} {Length: 439} {NoTransDecoderORF} {RNA1310_138760}
12.	MligTC455_00253	20	0.41	Mlig455_029892	Neo: - Age: -		0.95	-	-	-	-	0.950	-	Mlig455_029892 {REF} {Length: 278} {NoTransDecoderORF} {RNA1509_49552}
13.	MligTC455_03444	4	0.08	Mlig455_042385	Neo: - Age: -		0.95	-	-	-	-	0.950	-	Mlig455_042385 {REF} {Length: 2176} {RNA1509_35100} {RNA1310_18231} {RNA815_38824}
14.	MligTC455_22687	13	0.28	Mlig455_000568	Neo: - Age: -	GRIK3	0.95	-	-	-	-	0.950	-	Mlig455_000568 {REF} {Length: 3271} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=78.1]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=50.7]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=127, Expect=1e-29]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=123, Expect=3e-28]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=121, Expect=1e-27]} {Mouse: ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=120, Expect=2e-27]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=120, Expect=1e-27]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=119, Expect=3e-27]; ENSMUSG00000003378, Grik5, glutamate receptor, ionotropic, kainate 5 (gamma 2), [Score=115, Expect=1e-25]} {Dmel: FBgn0039916, Ekar, Eye-enriched kainate receptor, [Score=122, Expect=2e-28]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=105, Expect=5e-23]} {Smed: dd_Smed_v6_22973_0_1, dd_Smed_v6_22973_0_1, [Score=120, Expect=8e-28]} {RNA1310_20394.2} {RNA815_45848}
15.	MligTC455_57427	3	0.05	Mlig455_044620	Neo: - Age: -		0.95	-	-	-	-	0.950	-	Mlig455_044620 {REF} {Length: 323} {NoTransDecoderORF}

Berezikov Lab - 2020-2021 © ERIBA